CuGenDBv2

Gene ID	Spg005134
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Tubulin-specific chaperone A
Genome location	scaffold11:34683587..34684418
RNA-Seq Expression	Spg005134
Synteny	Spg005134
Gene Ontology terms	GO:0007021 - tubulin complex assembly (biological process) GO:0007023 - post-chaperonin tubulin folding pathway (biological process) GO:0005737 - cytoplasm (cellular component) GO:0005874 - microtubule (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0048487 - beta-tubulin binding (molecular function)
InterPro domains	IPR004226 - Tubulin binding cofactor A IPR036126 - Tubulin binding cofactor A superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6574808.1 Tubulin-folding cofactor A, partial [Cucurbita argyrosperma subsp. sororia]

1.5e-12

97.73

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Query:  MATVKNFKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGAD
        MATVKN KIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGAD
Subjt:  MATVKNFKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGAD

KDO49405.1 hypothetical protein CISIN_1g038806mg, partial [Citrus sinensis]

5.2e-13

79.25

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Query:  APSPSSLVSMATVKNFKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGAD
        +P P   V MATV+N KIKT+TCKR++KELHSYEKEVEREAAKTADMKEKGAD
Subjt:  APSPSSLVSMATVKNFKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGAD

XP_022959143.1 tubulin-folding cofactor A [Cucurbita moschata]

1.5e-12

97.73

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Query:  MATVKNFKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGAD
        MATVKN KIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGAD
Subjt:  MATVKNFKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGAD

XP_023006149.1 tubulin-folding cofactor A [Cucurbita maxima]

1.5e-12

97.73

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Query:  MATVKNFKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGAD
        MATVKN KIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGAD
Subjt:  MATVKNFKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGAD

XP_023548059.1 tubulin-folding cofactor A [Cucurbita pepo subsp. pepo]

1.5e-12

97.73

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Query:  MATVKNFKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGAD
        MATVKN KIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGAD
Subjt:  MATVKNFKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGAD

TrEMBL top hits

e value

%identity

Alignment

A0A067E691 Tubulin-specific chaperone A (Fragment)

2.5e-13

79.25

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Query:  APSPSSLVSMATVKNFKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGAD
        +P P   V MATV+N KIKT+TCKR++KELHSYEKEVEREAAKTADMKEKGAD
Subjt:  APSPSSLVSMATVKNFKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGAD

A0A1R3JE48 Tubulin-folding cofactor A

9.5e-13

82.35

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Query:  SPSSLVSMATVKNFKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGAD
        SP   ++MATV+N KIKT+TCKRI+KELHSYEKEVEREAAKTADMKEKGAD
Subjt:  SPSSLVSMATVKNFKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGAD

A0A1R3KEZ4 Tubulin-folding cofactor A

9.5e-13

82.35

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Query:  SPSSLVSMATVKNFKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGAD
        SP   ++MATV+N KIKT+TCKRI+KELHSYEKEVEREAAKTADMKEKGAD
Subjt:  SPSSLVSMATVKNFKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGAD

A0A6J1H416 Tubulin-specific chaperone A

7.3e-13

97.73

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Query:  MATVKNFKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGAD
        MATVKN KIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGAD
Subjt:  MATVKNFKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGAD

A0A6J1KV46 Tubulin-specific chaperone A

7.3e-13

97.73

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Query:  MATVKNFKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGAD
        MATVKN KIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGAD
Subjt:  MATVKNFKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGAD

SwissProt top hits

e value

%identity

Alignment

O04350 Tubulin-folding cofactor A

3.7e-14

86.36

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Query:  MATVKNFKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGAD
        MAT++N KIKT+TCKRI+KELHSYEKEVEREAAKTADMK+KGAD
Subjt:  MATVKNFKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGAD

Arabidopsis top hits

e value

%identity

Alignment

AT2G30410.1 tubulin folding cofactor A (KIESEL)

2.7e-15

86.36

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Query:  MATVKNFKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGAD
        MAT++N KIKT+TCKRI+KELHSYEKEVEREAAKTADMK+KGAD
Subjt:  MATVKNFKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGAD

AT2G30410.2 tubulin folding cofactor A (KIESEL)

2.7e-15

86.36

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Query:  MATVKNFKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGAD
        MAT++N KIKT+TCKRI+KELHSYEKEVEREAAKTADMK+KGAD
Subjt:  MATVKNFKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGAD

Sequences

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CDS sequence

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CTAAACTCTGCAAAGGCCTCTGGTCCCCTGAGAAAGATGAGAAGCTTTTCAATTACATTACCACTTTCGGCGTCGGCTGCTGGAGCTCCGTCCCCAAGCTCACTGGTAAG
TATGGCCACCGTAAAAAACTTCAAGATTAAGACAGCAACCTGCAAACGCATTATCAAGGAGTTGCATTCTTATGAGAAGGAGGTAGAGAGAGAAGCTGCCAAAACAGCTG
ACATGAAAGAAAAAGGAGCTGACCTTTGA

mRNA sequence

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Protein sequence

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LNSAKASGPLRKMRSFSITLPLSASAAGAPSPSSLVSMATVKNFKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADL

Spg005134 (gene) of Sponge gourd (cylindrica) v1 genome