; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg005138 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg005138
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold11:34647096..34648014
RNA-Seq ExpressionSpg005138
SyntenySpg005138
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]6.8e-2353.39Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVCWLHAIFRAKLVGGPG
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS ++ +TW+ELY ESVH+             ++++FNV  G    +  DDVCWLHA+FR K    PG
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVCWLHAIFRAKLVGGPG

Query:  GGVT----ERLSDDRTNR
          VT     R+   RT+R
Subjt:  GGVT----ERLSDDRTNR

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]9.2e-2060.23Show/hide
Query:  VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVCWLHAIFRAKLVGGPGGGVT
        VEIELPVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++F+V  G    +  DDVCWLHA+FRAK VGGPGGGVT
Subjt:  VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVCWLHAIFRAKLVGGPGGGVT

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]1.4e-2359.81Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVCWLHAIFRAKLV
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS ++SSTW+ELY+E VH+              + EDDVCWLHA+FRAK  
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVCWLHAIFRAKLV

Query:  GGPGGGV
        GGPGGGV
Subjt:  GGPGGGV

TYK08952.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]8.3e-2152.54Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQ----------EGQRVSLEEDDVCW
        MTEILS RL GTVCTQ                 VEIELPVPDTLPTSAE   ++SSTW+ELY+ESVH+  + +             EG    +  DDVCW
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQ----------EGQRVSLEEDDVCW

Query:  LHAIFRAKLVGGPGGGVT
        LHA+FRAK  GGP GGVT
Subjt:  LHAIFRAKLVGGPGGGVT

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]1.4e-2359.81Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVCWLHAIFRAKLV
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS ++SSTW+ELY+E VH+              + EDDVCWLHA+FRAK  
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVCWLHAIFRAKLV

Query:  GGPGGGV
        GGPGGGV
Subjt:  GGPGGGV

TrEMBL top hitse value%identityAlignment
A0A5A7V638 Uncharacterized protein3.3e-2353.39Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVCWLHAIFRAKLVGGPG
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS ++ +TW+ELY ESVH+             ++++FNV  G    +  DDVCWLHA+FR K    PG
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVCWLHAIFRAKLVGGPG

Query:  GGVT----ERLSDDRTNR
          VT     R+   RT+R
Subjt:  GGVT----ERLSDDRTNR

A0A5A7V9N3 Reverse transcriptase4.5e-2060.23Show/hide
Query:  VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVCWLHAIFRAKLVGGPGGGVT
        VEIELPVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++F+V  G    +  DDVCWLHA+FRAK VGGPGGGVT
Subjt:  VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVCWLHAIFRAKLVGGPGGGVT

A0A5A7VMG9 Reverse transcriptase6.6e-2459.81Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVCWLHAIFRAKLV
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS ++SSTW+ELY+E VH+              + EDDVCWLHA+FRAK  
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVCWLHAIFRAKLV

Query:  GGPGGGV
        GGPGGGV
Subjt:  GGPGGGV

A0A5D3CCC7 DNA/RNA polymerases superfamily protein4.0e-2152.54Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQ----------EGQRVSLEEDDVCW
        MTEILS RL GTVCTQ                 VEIELPVPDTLPTSAE   ++SSTW+ELY+ESVH+  + +             EG    +  DDVCW
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQ----------EGQRVSLEEDDVCW

Query:  LHAIFRAKLVGGPGGGVT
        LHA+FRAK  GGP GGVT
Subjt:  LHAIFRAKLVGGPGGGVT

A0A5D3DX39 Reverse transcriptase6.6e-2459.81Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVCWLHAIFRAKLV
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS ++SSTW+ELY+E VH+              + EDDVCWLHA+FRAK  
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVCWLHAIFRAKLV

Query:  GGPGGGV
        GGPGGGV
Subjt:  GGPGGGV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAAATCGAGCTCCCGGTGCCTGATACATTGCCAACGTCTGCTGAAAGTTCCAGAACAAG
TTCCAGTACGTGGGTGGAGTTGTATATTGAATCTGTTCATATTGTAAATGTTTTGTTCAACGTTCAAGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCTGTTGGC
TTCACGCCATCTTTCGGGCTAAGCTAGTAGGTGGTCCGGGAGGGGGTGTGACAGAAAGACTCTCGGACGACCGTACCAATCGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAAATCGAGCTCCCGGTGCCTGATACATTGCCAACGTCTGCTGAAAGTTCCAGAACAAG
TTCCAGTACGTGGGTGGAGTTGTATATTGAATCTGTTCATATTGTAAATGTTTTGTTCAACGTTCAAGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCTGTTGGC
TTCACGCCATCTTTCGGGCTAAGCTAGTAGGTGGTCCGGGAGGGGGTGTGACAGAAAGACTCTCGGACGACCGTACCAATCGGTAA
Protein sequenceShow/hide protein sequence
MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVCWLHAIFRAKLVGGPGGGVTERLSDDRTNR