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Spg005155 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg005155
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold11:34033148..34035199
RNA-Seq ExpressionSpg005155
SyntenySpg005155
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]3.3e-1487.76Show/hide
Query:  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI
        PLSTLSVLRDNDAVVEIELPVPDTLPTSAESS ++SSTW+ELY ESVH+
Subjt:  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI
KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]7.4e-1485.71Show/hide
Query:  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI
        PLSTLSVLRDNDAVVEIELPVPDTLPTSAESS ++SSTW+ELY+E VH+
Subjt:  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI
TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]9.7e-1470Show/hide
Query:  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQ
        PLSTLSVLRDNDAVVEIELP+PDTLPTSAESS ++SSTW+ELY ESVH+  + +   + +
Subjt:  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQ
TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]3.3e-1487.76Show/hide
Query:  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI
        PLSTLSVLRDNDAVVEIELPVPDTLPTSAESS ++SSTW+ELY ESVH+
Subjt:  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI
TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]7.4e-1485.71Show/hide
Query:  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI
        PLSTLSVLRDNDAVVEIELPVPDTLPTSAESS ++SSTW+ELY+E VH+
Subjt:  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI
TrEMBL top hitse value%identityAlignment
A0A5A7T9P7 Gag/pol protein4.7e-1470Show/hide
Query:  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQ
        PLSTLSVLRDNDAVVEIELP+PDTLPTSAESS ++SSTW+ELY ESVH+  + +   + +
Subjt:  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQ
A0A5A7V9N3 Reverse transcriptase1.6e-1487.76Show/hide
Query:  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI
        PLSTLSVLRDNDAVVEIELPVPDTLPTSAESS ++SSTW+ELY ESVH+
Subjt:  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI
A0A5A7VMG9 Reverse transcriptase3.6e-1485.71Show/hide
Query:  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI
        PLSTLSVLRDNDAVVEIELPVPDTLPTSAESS ++SSTW+ELY+E VH+
Subjt:  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI
A0A5D3DSY7 Putative Retrotransposon protein1.6e-1487.76Show/hide
Query:  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI
        PLSTLSVLRDNDAVVEIELPVPDTLPTSAESS ++SSTW+ELY ESVH+
Subjt:  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI
A0A5D3DX39 Reverse transcriptase3.6e-1485.71Show/hide
Query:  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI
        PLSTLSVLRDNDAVVEIELPVPDTLPTSAESS ++SSTW+ELY+E VH+
Subjt:  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAATGGACAGCAAGACACCCACCACCGCTTCACCCATTATCAGCCCCATTTCTCATCTTTTTCCATCCAAACTTTCAGAGCACTTTAGGGAGAGAGTGAAGGAGGA
AGAAGAAGAAGAATTTCGTGGTTTTGAGGTTGAAGAAGATAAGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGGTGCAAAACTGTTATATTCCGTTGTCGACGT
TGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCGGAAAGTTCCAGAACAAGCTCCAGTACGTGGGTGGAG
TTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCGG
mRNA sequenceShow/hide mRNA sequence
ATGGAAATGGACAGCAAGACACCCACCACCGCTTCACCCATTATCAGCCCCATTTCTCATCTTTTTCCATCCAAACTTTCAGAGCACTTTAGGGAGAGAGTGAAGGAGGA
AGAAGAAGAAGAATTTCGTGGTTTTGAGGTTGAAGAAGATAAGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGGTGCAAAACTGTTATATTCCGTTGTCGACGT
TGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCGGAAAGTTCCAGAACAAGCTCCAGTACGTGGGTGGAG
TTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCGG
Protein sequenceShow/hide protein sequence
MEMDSKTPTTASPIISPISHLFPSKLSEHFRERVKEEEEEEFRGFEVEEDKKSSCKASHSRIWVQNCYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVE
LYIESVHIVNVLFNVQEGQR