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Spg005194 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg005194
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein, putative, unclassified
Genome locationscaffold11:34561088..34561845
RNA-Seq ExpressionSpg005194
SyntenySpg005194
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AAX92970.1 retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]1.4e-0928.83Show/hide
Query:  ESKDSKDEIVWNLDKKGIFSMKSVYHLASKDLFPNEASQSNSSKEASF---WNSLWKANVLPRSKVCVWRIVNEHHPHKGTNQNTTTPASQ-------VQ
        +++  +D + W+ D+ G+FS++S YHLA   L  NE + S+SS + +    W+ LWK+ V  + K+  W+  +   P     +     AS+       V 
Subjt:  ESKDSKDEIVWNLDKKGIFSMKSVYHLASKDLFPNEASQSNSSKEASF---WNSLWKANVLPRSKVCVWRIVNEHHPHKGTNQNTTTPASQ-------VQ

Query:  WEKPLPNAWKLNSDAAWLEKEGRGGLGWLVRDSEGSLICFGMKQVNQRWAIKNLEACAMLEGI
        W KP     KLN D ++     +GG+G ++R++ GS+I      + +  +    E  A  EGI
Subjt:  WEKPLPNAWKLNSDAAWLEKEGRGGLGWLVRDSEGSLICFGMKQVNQRWAIKNLEACAMLEGI

EEC68026.1 hypothetical protein OsI_35837 [Oryza sativa Indica Group]1.1e-0929.01Show/hide
Query:  SKDSKDEIVWNLDKKGIFSMKSVYHLASKDLFPNEASQSNSSKEASF---WNSLWKANVLPRSKVCVWRIVNEHHPHKGTNQNTTTPASQ-------VQW
        ++  +D + W+ D+ G+FS++S YHLA   L  NE + S+SS + +    W+ LWK+ V  + K+  W+  +   P     +     AS+       V W
Subjt:  SKDSKDEIVWNLDKKGIFSMKSVYHLASKDLFPNEASQSNSSKEASF---WNSLWKANVLPRSKVCVWRIVNEHHPHKGTNQNTTTPASQ-------VQW

Query:  EKPLPNAWKLNSDAAWLEKEGRGGLGWLVRDSEGSLICFGMKQVNQRWAIKNLEACAMLEGI
         KP     KLN D ++     +GG+G ++R++ GS+I      + +  +    E  A  EGI
Subjt:  EKPLPNAWKLNSDAAWLEKEGRGGLGWLVRDSEGSLICFGMKQVNQRWAIKNLEACAMLEGI

XP_015384077.1 uncharacterized protein LOC107176301 [Citrus sinensis]7.0e-0923.46Show/hide
Query:  KDEIVWNLDKKGIFSMKSVYHLASKDLFPNEASQSNSSKEASFWNSLWKANVLPRSKVCVWR-----------------------------IVNEHHP--
        +D ++W+ DKKG +++KS Y +A K  FPN+AS S SS +   WN+LW  N+L + K+ +WR                             +   HH   
Subjt:  KDEIVWNLDKKGIFSMKSVYHLASKDLFPNEASQSNSSKEASFWNSLWKANVLPRSKVCVWR-----------------------------IVNEHHP--

Query:  ---------------------------------------------------------------HKGTNQNTTTPASQVQWEKPLPNAWKLNSDAAWLEKE
                                                                       H  T+ +T++   Q +W+ P  N +K+N DAA   K 
Subjt:  ---------------------------------------------------------------HKGTNQNTTTPASQVQWEKPLPNAWKLNSDAAWLEKE

Query:  GRGGLGWLVRDSEGSLICFGMKQVNQRWAIKNLEACAMLEGIK
           GLG ++RDSE + +  G+ Q   + ++   EA A+  G+K
Subjt:  GRGGLGWLVRDSEGSLICFGMKQVNQRWAIKNLEACAMLEGIK

XP_015388020.1 uncharacterized protein LOC107177951 [Citrus sinensis]1.2e-0832.67Show/hide
Query:  MPTESKDSKDEIVWNLDKKGIFSMKSVYHLASKDLFPNEASQSNSSKEASFWNSLWKANVLPRSK--------------VCVWRIVNEHHPHKGTNQNTT
        +P   + S D+++W+ DKKG +S+KS Y LA +  FPN  S S   K  S W+S+W   +  ++K              V  ++ +        ++QN  
Subjt:  MPTESKDSKDEIVWNLDKKGIFSMKSVYHLASKDLFPNEASQSNSSKEASFWNSLWKANVLPRSK--------------VCVWRIVNEHHPHKGTNQNTT

Query:  TPASQVQWEKPLPNAWKLNSDAAWLEKEGRGGLGWLVRDSEGSLICFGMK
          ASQ  W  P    +K+N DAA      R GLG ++R+SEG LI   +K
Subjt:  TPASQVQWEKPLPNAWKLNSDAAWLEKEGRGGLGWLVRDSEGSLICFGMK

XP_024156084.1 uncharacterized protein LOC112164076 [Rosa chinensis]4.8e-1028.99Show/hide
Query:  MPTESKDSKDEIVWNLDKKGIFSMKSVYHLASKDLFPNEASQSNSSKEA----SFWNSLWKANVLPRSKVCVWRIVNEHHP---------HKGTNQNTTT
        +P   + + D  VW+ D KGI++++S YH+    L   + + S +S++      +W  +W ANV P+ KV VWR+V+   P         H+        
Subjt:  MPTESKDSKDEIVWNLDKKGIFSMKSVYHLASKDLFPNEASQSNSSKEA----SFWNSLWKANVLPRSKVCVWRIVNEHHP---------HKGTNQNTTT

Query:  PASQVQWEKPLPNAWKLNSDAAWLEKEGRGGLGWLVRDSEGSLICFGMKQVNQRWAIKNLEACAMLEGI
        P +  +W+ P     K+N D A+    G GG+G +VRD  G+ I    +      +  N+EA A   G+
Subjt:  PASQVQWEKPLPNAWKLNSDAAWLEKEGRGGLGWLVRDSEGSLICFGMKQVNQRWAIKNLEACAMLEGI

TrEMBL top hitse value%identityAlignment
A0A2N9IYC8 Reverse transcriptase domain-containing protein5.8e-0922.29Show/hide
Query:  MPTESKDSKDEIVWNLDKKGIFSMKSVYHLASKDLFPNEASQSNSSKEASFWNSLWKANVLPRSKVCVWRIVNEHHPHKGTNQNTTTPASQVQWEKPLPN
        +P   ++  D +VW   K+G+++++S YHL   D   +E+  S+++K +  W ++W+A    R  +  +    +    +    N+TT    ++W+ P   
Subjt:  MPTESKDSKDEIVWNLDKKGIFSMKSVYHLASKDLFPNEASQSNSSKEASFWNSLWKANVLPRSKVCVWRIVNEHHPHKGTNQNTTTPASQVQWEKPLPN

Query:  AWKLNSDAAWLEKEGRGGLGWLVRDSEGSLICFGMKQVNQRWAIKNLEACAMLEGIK
         +K+N D A        G+G ++R+ +G ++    +++    +++ +EA A    I+
Subjt:  AWKLNSDAAWLEKEGRGGLGWLVRDSEGSLICFGMKQVNQRWAIKNLEACAMLEGIK

A0A803PM23 Uncharacterized protein1.3e-0826.53Show/hide
Query:  DEIVWNLDKKGIFSMKSVYHLASKDLFPNEASQSNSSKEASFWNSLWKANVLPRSKVCVWRIVNEHHPHKGTNQNTTTPASQVQWEKPLPNAWKLNSDAA
        D+ VW+    GI+++ S Y +A  +    EAS    ++  ++WN +W   + P+ +  +WR                 P  + +WE P P  + LNSDA+
Subjt:  DEIVWNLDKKGIFSMKSVYHLASKDLFPNEASQSNSSKEASFWNSLWKANVLPRSKVCVWRIVNEHHPHKGTNQNTTTPASQVQWEKPLPNAWKLNSDAA

Query:  WLEKEGRGGLGWLVRDSEGSLICFGMKQVNQRWAIKNLEACAMLEGI
          +    GGLG L+R+  G ++   ++Q    ++++  E  A+  GI
Subjt:  WLEKEGRGGLGWLVRDSEGSLICFGMKQVNQRWAIKNLEACAMLEGI

B8BK40 Uncharacterized protein5.2e-1029.01Show/hide
Query:  SKDSKDEIVWNLDKKGIFSMKSVYHLASKDLFPNEASQSNSSKEASF---WNSLWKANVLPRSKVCVWRIVNEHHPHKGTNQNTTTPASQ-------VQW
        ++  +D + W+ D+ G+FS++S YHLA   L  NE + S+SS + +    W+ LWK+ V  + K+  W+  +   P     +     AS+       V W
Subjt:  SKDSKDEIVWNLDKKGIFSMKSVYHLASKDLFPNEASQSNSSKEASF---WNSLWKANVLPRSKVCVWRIVNEHHPHKGTNQNTTTPASQ-------VQW

Query:  EKPLPNAWKLNSDAAWLEKEGRGGLGWLVRDSEGSLICFGMKQVNQRWAIKNLEACAMLEGI
         KP     KLN D ++     +GG+G ++R++ GS+I      + +  +    E  A  EGI
Subjt:  EKPLPNAWKLNSDAAWLEKEGRGGLGWLVRDSEGSLICFGMKQVNQRWAIKNLEACAMLEGI

Q2R6V8 Retrotransposon protein, putative, unclassified6.8e-1028.83Show/hide
Query:  ESKDSKDEIVWNLDKKGIFSMKSVYHLASKDLFPNEASQSNSSKEASF---WNSLWKANVLPRSKVCVWRIVNEHHPHKGTNQNTTTPASQ-------VQ
        +++  +D + W+ D+ G+FS++S YHLA   L  NE + S+SS + +    W+ LWK+ V  + K+  W+  +   P     +     AS+       V 
Subjt:  ESKDSKDEIVWNLDKKGIFSMKSVYHLASKDLFPNEASQSNSSKEASF---WNSLWKANVLPRSKVCVWRIVNEHHPHKGTNQNTTTPASQ-------VQ

Query:  WEKPLPNAWKLNSDAAWLEKEGRGGLGWLVRDSEGSLICFGMKQVNQRWAIKNLEACAMLEGI
        W KP     KLN D ++     +GG+G ++R++ GS+I      + +  +    E  A  EGI
Subjt:  WEKPLPNAWKLNSDAAWLEKEGRGGLGWLVRDSEGSLICFGMKQVNQRWAIKNLEACAMLEGI

Q53MP1 Retrotransposon protein, putative, unclassified6.8e-1028.83Show/hide
Query:  ESKDSKDEIVWNLDKKGIFSMKSVYHLASKDLFPNEASQSNSSKEASF---WNSLWKANVLPRSKVCVWRIVNEHHPHKGTNQNTTTPASQ-------VQ
        +++  +D + W+ D+ G+FS++S YHLA   L  NE + S+SS + +    W+ LWK+ V  + K+  W+  +   P     +     AS+       V 
Subjt:  ESKDSKDEIVWNLDKKGIFSMKSVYHLASKDLFPNEASQSNSSKEASF---WNSLWKANVLPRSKVCVWRIVNEHHPHKGTNQNTTTPASQ-------VQ

Query:  WEKPLPNAWKLNSDAAWLEKEGRGGLGWLVRDSEGSLICFGMKQVNQRWAIKNLEACAMLEGI
        W KP     KLN D ++     +GG+G ++R++ GS+I      + +  +    E  A  EGI
Subjt:  WEKPLPNAWKLNSDAAWLEKEGRGGLGWLVRDSEGSLICFGMKQVNQRWAIKNLEACAMLEGI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein6.5e-0530Show/hide
Query:  PASQVQWEKPLPNAWKLNSDAAWLEKEGRGGLGWLVRDSEGSLICFGMKQVNQRWAIKNLEACAMLEGIK
        P+   +W  P  +  K N DA+  E+    GLGW++R+S+G++I  GM +   R   +  E   ++  I+
Subjt:  PASQVQWEKPLPNAWKLNSDAAWLEKEGRGGLGWLVRDSEGSLICFGMKQVNQRWAIKNLEACAMLEGIK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGACAGAAAGCAAAGATTCAAAGGACGAAATTGTTTGGAACCTTGATAAAAAAGGCATTTTCTCTATGAAAAGTGTCTACCACTTAGCCTCGAAAGACCTATTCCC
AAATGAAGCTTCCCAATCTAACTCCTCCAAGGAAGCATCTTTCTGGAATAGCTTATGGAAGGCCAATGTGCTCCCAAGATCCAAAGTGTGTGTGTGGAGAATTGTAAACG
AACATCATCCGCACAAAGGAACAAATCAGAACACCACAACCCCTGCGAGTCAAGTTCAGTGGGAAAAGCCATTACCGAATGCATGGAAACTTAATTCAGACGCAGCCTGG
CTTGAGAAAGAAGGCCGCGGAGGTCTTGGTTGGCTCGTGCGTGACTCGGAGGGATCCTTGATCTGTTTCGGGATGAAGCAAGTTAATCAAAGATGGGCTATAAAGAATCT
GGAAGCTTGCGCAATGCTAGAAGGTATCAAGGAAGTTTCGAATACCTGTAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCGACAGAAAGCAAAGATTCAAAGGACGAAATTGTTTGGAACCTTGATAAAAAAGGCATTTTCTCTATGAAAAGTGTCTACCACTTAGCCTCGAAAGACCTATTCCC
AAATGAAGCTTCCCAATCTAACTCCTCCAAGGAAGCATCTTTCTGGAATAGCTTATGGAAGGCCAATGTGCTCCCAAGATCCAAAGTGTGTGTGTGGAGAATTGTAAACG
AACATCATCCGCACAAAGGAACAAATCAGAACACCACAACCCCTGCGAGTCAAGTTCAGTGGGAAAAGCCATTACCGAATGCATGGAAACTTAATTCAGACGCAGCCTGG
CTTGAGAAAGAAGGCCGCGGAGGTCTTGGTTGGCTCGTGCGTGACTCGGAGGGATCCTTGATCTGTTTCGGGATGAAGCAAGTTAATCAAAGATGGGCTATAAAGAATCT
GGAAGCTTGCGCAATGCTAGAAGGTATCAAGGAAGTTTCGAATACCTGTAATTGA
Protein sequenceShow/hide protein sequence
MPTESKDSKDEIVWNLDKKGIFSMKSVYHLASKDLFPNEASQSNSSKEASFWNSLWKANVLPRSKVCVWRIVNEHHPHKGTNQNTTTPASQVQWEKPLPNAWKLNSDAAW
LEKEGRGGLGWLVRDSEGSLICFGMKQVNQRWAIKNLEACAMLEGIKEVSNTCN