; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg005200 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg005200
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposable element Tf2
Genome locationscaffold11:34250679..34259743
RNA-Seq ExpressionSpg005200
SyntenySpg005200
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037025.1 polyprotein [Cucumis melo var. makuwa]2.1e-1162.5Show/hide
Query:  RPPP------PPQTNLQPASSSRASSSKGKHPISPASAPSPMCADIYAMGLGFETVSRRRRGSSSRK-TEEKLEFPRNAL
        RPPP      P  TN QPASSSRASSSKGK PIS ASA +PMCAD YAM L F+TVSRRR+GSS R  T     +P   L
Subjt:  RPPP------PPQTNLQPASSSRASSSKGKHPISPASAPSPMCADIYAMGLGFETVSRRRRGSSSRK-TEEKLEFPRNAL

KAA0051819.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]3.0e-1357.3Show/hide
Query:  LSREEDQFLLAKNSIMTSLAGATSESDLQAVIQTIVQTLSDNNDVQNEDDAEAADVASESYVNDAEDNEEYDPYANFDILDPYYDSQPG
        L  EEDQFLLAKNSIMTS+AGA SE+DLQA+++T+V  + D+N    EDD E   ++S+S VN+ + +   D Y NFDI DPY DSQPG
Subjt:  LSREEDQFLLAKNSIMTSLAGATSESDLQAVIQTIVQTLSDNNDVQNEDDAEAADVASESYVNDAEDNEEYDPYANFDILDPYYDSQPG

KAA0066324.1 hypothetical protein E6C27_scaffold21G003850 [Cucumis melo var. makuwa]5.1e-1352.58Show/hide
Query:  VVESQCTSLSREEDQFLLAKNSIMTSLAGATSESDLQAVIQTIVQTLSDNNDVQNEDDAEAADVASESYVNDAEDNEEYDPYANFDILDPYYDSQPG
        +VE+Q +SLSREE+Q+L AKNSIMT + GA SE+DLQAV++T++ T+ ++N    ED+ E   ++ +S +ND   N + DPY NFDI D Y DSQPG
Subjt:  VVESQCTSLSREEDQFLLAKNSIMTSLAGATSESDLQAVIQTIVQTLSDNNDVQNEDDAEAADVASESYVNDAEDNEEYDPYANFDILDPYYDSQPG

TYK04653.1 cysteine-rich RLK RECEPTOR-like protein kinase [Cucumis melo var. makuwa]1.8e-1059.3Show/hide
Query:  LSREEDQFLLAKNSIMTSLAGATSESDLQAVIQTIVQTLSDNNDVQNEDDAEAADVASESYVNDAEDNEEYDPYANFDILDPYYDS
        LSREEDQFLLAKNSIMTS+A A SE+DLQAV++T+V   SD+N    +D  E     S+S VND +     DPY NFDI DPY DS
Subjt:  LSREEDQFLLAKNSIMTSLAGATSESDLQAVIQTIVQTLSDNNDVQNEDDAEAADVASESYVNDAEDNEEYDPYANFDILDPYYDS

TYK06665.1 hypothetical protein E5676_scaffold453G001500 [Cucumis melo var. makuwa]3.7e-1154.95Show/hide
Query:  VVESQCTSLSREEDQFLLAKNSIMTSLAGATSESDLQAVIQTIVQTLSDNNDVQNEDDAEAADVASESYVNDAE-DNEEYDPYANFDILDP
        +V++QC+SLSREEDQFLLAKNS MTS+ GA S+ DLQA+++T V   S++N    +D+ E     S S+VND + DN   DPY NFDI DP
Subjt:  VVESQCTSLSREEDQFLLAKNSIMTSLAGATSESDLQAVIQTIVQTLSDNNDVQNEDDAEAADVASESYVNDAE-DNEEYDPYANFDILDP

TrEMBL top hitse value%identityAlignment
A0A5A7T6B7 Polyprotein1.0e-1162.5Show/hide
Query:  RPPP------PPQTNLQPASSSRASSSKGKHPISPASAPSPMCADIYAMGLGFETVSRRRRGSSSRK-TEEKLEFPRNAL
        RPPP      P  TN QPASSSRASSSKGK PIS ASA +PMCAD YAM L F+TVSRRR+GSS R  T     +P   L
Subjt:  RPPP------PPQTNLQPASSSRASSSKGKHPISPASAPSPMCADIYAMGLGFETVSRRRRGSSSRK-TEEKLEFPRNAL

A0A5A7U8X4 Retrotransposable element Tf28.8e-1160Show/hide
Query:  LSR-EEDQFLLAKNSIMTSLAGATSESDLQAVIQTIVQTLSDNNDVQNEDDAEAADVASESYVNDAEDNEEYDPYANFDILDPYYDSQPG
        LSR EEDQFLLAKNSIMTS+AGA SE+DLQAV++T+V   SD+N    +DD E     S+S VND +     DPY NFDI D Y DSQ G
Subjt:  LSR-EEDQFLLAKNSIMTSLAGATSESDLQAVIQTIVQTLSDNNDVQNEDDAEAADVASESYVNDAEDNEEYDPYANFDILDPYYDSQPG

A0A5A7UEA0 Retrotransposable element Tf21.5e-1357.3Show/hide
Query:  LSREEDQFLLAKNSIMTSLAGATSESDLQAVIQTIVQTLSDNNDVQNEDDAEAADVASESYVNDAEDNEEYDPYANFDILDPYYDSQPG
        L  EEDQFLLAKNSIMTS+AGA SE+DLQA+++T+V  + D+N    EDD E   ++S+S VN+ + +   D Y NFDI DPY DSQPG
Subjt:  LSREEDQFLLAKNSIMTSLAGATSESDLQAVIQTIVQTLSDNNDVQNEDDAEAADVASESYVNDAEDNEEYDPYANFDILDPYYDSQPG

A0A5D3BP68 Uncharacterized protein2.5e-1352.58Show/hide
Query:  VVESQCTSLSREEDQFLLAKNSIMTSLAGATSESDLQAVIQTIVQTLSDNNDVQNEDDAEAADVASESYVNDAEDNEEYDPYANFDILDPYYDSQPG
        +VE+Q +SLSREE+Q+L AKNSIMT + GA SE+DLQAV++T++ T+ ++N    ED+ E   ++ +S +ND   N + DPY NFDI D Y DSQPG
Subjt:  VVESQCTSLSREEDQFLLAKNSIMTSLAGATSESDLQAVIQTIVQTLSDNNDVQNEDDAEAADVASESYVNDAEDNEEYDPYANFDILDPYYDSQPG

A0A5D3C5L0 Uncharacterized protein1.8e-1154.95Show/hide
Query:  VVESQCTSLSREEDQFLLAKNSIMTSLAGATSESDLQAVIQTIVQTLSDNNDVQNEDDAEAADVASESYVNDAE-DNEEYDPYANFDILDP
        +V++QC+SLSREEDQFLLAKNS MTS+ GA S+ DLQA+++T V   S++N    +D+ E     S S+VND + DN   DPY NFDI DP
Subjt:  VVESQCTSLSREEDQFLLAKNSIMTSLAGATSESDLQAVIQTIVQTLSDNNDVQNEDDAEAADVASESYVNDAE-DNEEYDPYANFDILDP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTTGAGGCAAGGGTACTGCACCATAAAATGGGTCATCCCATGCTTAAGAGCTCATGACTGTAGGGCTGCTTTAAGTCCGAAAAACAAAAGTATAAACCCCTTGAA
AATGTGTTTTGATATGTCTGATAATAGAGCTAAGTTGTGGCAAGTTCTTAGAATTGAGTTAAAAGTGGTGATTATTTGTCCATGCCGGAAGAATTATTTTGCTGCAGCAG
AGCTTGGTTTTGCAGAATGCACAGAATATGTTGCTGGGCGACTTAAGGGAGCAAACTCTGTGCTGGAGCAAAGCTGGGAGCAAAAACTGCCACTGTGGAAAATGGTTGAG
AAGTTGCGAAATAGGTGCTGGAAGGTTGCCCGGTCAGTTTCGGGGTCAAAACGGCCGGTTAGGTGCAAAGAAGACTCGTCAACAACGACCCGCGGACGACTCGGAACGAC
CTCAGTTTTTCCAGAAATGCGGTCGCATTTCATTTTTCCTTCCCAGAAATGCGGTCGCATTTCTGAGAAATTCCAACTTTTCCTCTGGAGGCCTCCGCCTCCTCCACAAA
CCAATCTTCAACCAGCTAGCTCCTCAAGGGCTAGTTCTTCAAAAGGCAAACACCCAATTTCTCCAGCATCTGCTCCATCTCCGATGTGTGCAGATATTTACGCCATGGGT
CTCGGTTTTGAAACTGTATCCAGGAGGCGCCGAGGTTCCTCTTCAAGAAAAACAGAGGAAAAGCTGGAATTTCCCAGAAATGCGCTGCATTTTTGGAAAGGCAAAATGAA
ATGCGACCGCATTTCTGGAAAAACTGAGACCGTTTCGAGTCATCCGCGAGTCGTTGTTGACGAGTCTTCTTCGCACCTAACTGGGCAACCAGACAACCAGAGTACTATTT
TCAATCCTTACCGAGGATGGTTGCAACACCAACAAGATAGTAGCAACAACGATCCAACACCTCATTTGGAGCAAGAATGTCTGTTTACTTTTGAAGACCAATATCAAGAT
CAGTATGCCCAACAAGAGATGGAACCACAAGTGTCAACCAGCTTGGAAGAACTCATAAGAGAATACATGGCAAGGAATGATGCCACGATAAAGAACTTGGAGATTCAAGT
AGGGCAATTGATAGAGGAATTGAAAAACAGTCAACAAGAAATCTTGTTCGACACCAAAGAGAATGTCGAACAAGAAGCACAAGAGCAATATAATGGGATAACATCTCAAA
GTGAATTGGAGCATGAAAGCCCTGAACTCTCAGTTGAAGCAAGAAGCATTCCAGCACTTGAAAATATTGAGGAGACAAAAGAGAGAGAAGAGATTAAAGAAGAATCGCCT
CAAAAAGAGAATAAAGAGAAGGCACGAGAAAAAAAAGTTGCAGTGAGCCATGCAGATGTCACTTCACAGCAAATGAACTTCGATGTGCTCCAGGCATTAGAACACCCTGA
GGAAATGAATGGATGTCTTGATTTTGATCCTATTGATTCTTTTACTTGTTGTAGCTTGCAGAAAATGCTATTCGAGAAGGAAATCAAAGAGGAAATCATGGAGGATGAAC
ATTGGCAATATGTAGCAGAAGATGAGACTACAAAGTCTGAGTTCAATAGTAGATTGAGTGAGCTGATAATAGAGACTAAGCACTCCATGATTAAAACGCCTCAGTTAAGA
CTCAAATCTCGTCCCTTATCAAGACCTAGGGTCAAGATGAAAGTTTGCGGTGCAAGAAGTCCATTAGGTCCCACCGGTAGCTCATTAAGGGCGTTGAGACAAGATAACGC
AGTGGTTGAAAGCCAATGCACATCTCTCTCTCGAGAAGAAGATCAATTTCTTCTCGCAAAAAACTCAATCATGACGTCTTTAGCAGGAGCAACGTCCGAATCAGACCTCC
AAGCCGTCATCCAAACAATCGTCCAGACGCTATCAGATAACAATGACGTTCAAAATGAAGATGATGCTGAAGCCGCTGATGTAGCTTCAGAATCATATGTCAATGATGCC
GAAGATAACGAAGAATACGATCCGTATGCAAATTTTGACATTTTAGATCCTTACTATGACTCCCAACCAGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTTTGAGGCAAGGGTACTGCACCATAAAATGGGTCATCCCATGCTTAAGAGCTCATGACTGTAGGGCTGCTTTAAGTCCGAAAAACAAAAGTATAAACCCCTTGAA
AATGTGTTTTGATATGTCTGATAATAGAGCTAAGTTGTGGCAAGTTCTTAGAATTGAGTTAAAAGTGGTGATTATTTGTCCATGCCGGAAGAATTATTTTGCTGCAGCAG
AGCTTGGTTTTGCAGAATGCACAGAATATGTTGCTGGGCGACTTAAGGGAGCAAACTCTGTGCTGGAGCAAAGCTGGGAGCAAAAACTGCCACTGTGGAAAATGGTTGAG
AAGTTGCGAAATAGGTGCTGGAAGGTTGCCCGGTCAGTTTCGGGGTCAAAACGGCCGGTTAGGTGCAAAGAAGACTCGTCAACAACGACCCGCGGACGACTCGGAACGAC
CTCAGTTTTTCCAGAAATGCGGTCGCATTTCATTTTTCCTTCCCAGAAATGCGGTCGCATTTCTGAGAAATTCCAACTTTTCCTCTGGAGGCCTCCGCCTCCTCCACAAA
CCAATCTTCAACCAGCTAGCTCCTCAAGGGCTAGTTCTTCAAAAGGCAAACACCCAATTTCTCCAGCATCTGCTCCATCTCCGATGTGTGCAGATATTTACGCCATGGGT
CTCGGTTTTGAAACTGTATCCAGGAGGCGCCGAGGTTCCTCTTCAAGAAAAACAGAGGAAAAGCTGGAATTTCCCAGAAATGCGCTGCATTTTTGGAAAGGCAAAATGAA
ATGCGACCGCATTTCTGGAAAAACTGAGACCGTTTCGAGTCATCCGCGAGTCGTTGTTGACGAGTCTTCTTCGCACCTAACTGGGCAACCAGACAACCAGAGTACTATTT
TCAATCCTTACCGAGGATGGTTGCAACACCAACAAGATAGTAGCAACAACGATCCAACACCTCATTTGGAGCAAGAATGTCTGTTTACTTTTGAAGACCAATATCAAGAT
CAGTATGCCCAACAAGAGATGGAACCACAAGTGTCAACCAGCTTGGAAGAACTCATAAGAGAATACATGGCAAGGAATGATGCCACGATAAAGAACTTGGAGATTCAAGT
AGGGCAATTGATAGAGGAATTGAAAAACAGTCAACAAGAAATCTTGTTCGACACCAAAGAGAATGTCGAACAAGAAGCACAAGAGCAATATAATGGGATAACATCTCAAA
GTGAATTGGAGCATGAAAGCCCTGAACTCTCAGTTGAAGCAAGAAGCATTCCAGCACTTGAAAATATTGAGGAGACAAAAGAGAGAGAAGAGATTAAAGAAGAATCGCCT
CAAAAAGAGAATAAAGAGAAGGCACGAGAAAAAAAAGTTGCAGTGAGCCATGCAGATGTCACTTCACAGCAAATGAACTTCGATGTGCTCCAGGCATTAGAACACCCTGA
GGAAATGAATGGATGTCTTGATTTTGATCCTATTGATTCTTTTACTTGTTGTAGCTTGCAGAAAATGCTATTCGAGAAGGAAATCAAAGAGGAAATCATGGAGGATGAAC
ATTGGCAATATGTAGCAGAAGATGAGACTACAAAGTCTGAGTTCAATAGTAGATTGAGTGAGCTGATAATAGAGACTAAGCACTCCATGATTAAAACGCCTCAGTTAAGA
CTCAAATCTCGTCCCTTATCAAGACCTAGGGTCAAGATGAAAGTTTGCGGTGCAAGAAGTCCATTAGGTCCCACCGGTAGCTCATTAAGGGCGTTGAGACAAGATAACGC
AGTGGTTGAAAGCCAATGCACATCTCTCTCTCGAGAAGAAGATCAATTTCTTCTCGCAAAAAACTCAATCATGACGTCTTTAGCAGGAGCAACGTCCGAATCAGACCTCC
AAGCCGTCATCCAAACAATCGTCCAGACGCTATCAGATAACAATGACGTTCAAAATGAAGATGATGCTGAAGCCGCTGATGTAGCTTCAGAATCATATGTCAATGATGCC
GAAGATAACGAAGAATACGATCCGTATGCAAATTTTGACATTTTAGATCCTTACTATGACTCCCAACCAGGATGA
Protein sequenceShow/hide protein sequence
MSLRQGYCTIKWVIPCLRAHDCRAALSPKNKSINPLKMCFDMSDNRAKLWQVLRIELKVVIICPCRKNYFAAAELGFAECTEYVAGRLKGANSVLEQSWEQKLPLWKMVE
KLRNRCWKVARSVSGSKRPVRCKEDSSTTTRGRLGTTSVFPEMRSHFIFPSQKCGRISEKFQLFLWRPPPPPQTNLQPASSSRASSSKGKHPISPASAPSPMCADIYAMG
LGFETVSRRRRGSSSRKTEEKLEFPRNALHFWKGKMKCDRISGKTETVSSHPRVVVDESSSHLTGQPDNQSTIFNPYRGWLQHQQDSSNNDPTPHLEQECLFTFEDQYQD
QYAQQEMEPQVSTSLEELIREYMARNDATIKNLEIQVGQLIEELKNSQQEILFDTKENVEQEAQEQYNGITSQSELEHESPELSVEARSIPALENIEETKEREEIKEESP
QKENKEKAREKKVAVSHADVTSQQMNFDVLQALEHPEEMNGCLDFDPIDSFTCCSLQKMLFEKEIKEEIMEDEHWQYVAEDETTKSEFNSRLSELIIETKHSMIKTPQLR
LKSRPLSRPRVKMKVCGARSPLGPTGSSLRALRQDNAVVESQCTSLSREEDQFLLAKNSIMTSLAGATSESDLQAVIQTIVQTLSDNNDVQNEDDAEAADVASESYVNDA
EDNEEYDPYANFDILDPYYDSQPG