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Spg005236 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg005236
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold11:36078371..36079030
RNA-Seq ExpressionSpg005236
SyntenySpg005236
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]5.6e-1434.51Show/hide
Query:  WKPSDSNQWKLNTDASWNGNEKKGMGGMGWPICDSNGSLIETGCARIYKNWSIKCIEAKAILEGLEAYSSQGDFEGSRFKPLVVELDSIEVVGAINEDFE
        WKP  SN WKLNT+A+W  +     GG+GW + D  G +I+  C  I    +I  +E  AI EGL A   +        +P+ +E DS+E +  ++   +
Subjt:  WKPSDSNQWKLNTDASWNGNEKKGMGGMGWPICDSNGSLIETGCARIYKNWSIKCIEAKAILEGLEAYSSQGDFEGSRFKPLVVELDSIEVVGAINEDFE

Query:  DQSELSSIIREIKRKGEATRVVSFSKCSRISNTLAHKLAKAA
        DQ+E+  ++ EI +  +   +VS    SR +N +AH LA+ A
Subjt:  DQSELSSIIREIKRKGEATRVVSFSKCSRISNTLAHKLAKAA

XP_022148737.1 uncharacterized protein LOC111017329 [Momordica charantia]1.2e-0831.65Show/hide
Query:  SDSNQWKLNTDASWNGNEKKGMGGMGWPICDSNGSLIETGCARIYKNWSIKCIEAKAILEGLEAYSSQGDFEGSRFKPLVVELDSIEVVGAINEDFEDQS
        S  N WKLNTDA+W+ N+  G+GG+GW I +    + + G   I     I  +E  AI  G+EA  S           L++E +S+E +  I    ++ +
Subjt:  SDSNQWKLNTDASWNGNEKKGMGGMGWPICDSNGSLIETGCARIYKNWSIKCIEAKAILEGLEAYSSQGDFEGSRFKPLVVELDSIEVVGAINEDFEDQS

Query:  ELSSIIREIKRKGEATRVVSFSKCSRISNTLAHKLAKAA
        E+  ++++IK  GE  R+  F    R  N++A ++A  A
Subjt:  ELSSIIREIKRKGEATRVVSFSKCSRISNTLAHKLAKAA

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]3.1e-1232.67Show/hide
Query:  KNHSSYLLWKPSDSNQWKLNTDASWNGNEKKGMGGMGWPICDSNGSLIETGCARIYKNWSIKCIEAKAILEGLEAYSSQGDFEGSRFKPLVVELDSIEVV
        K  ++ L W+P   + W LN DASW+ +  +  GG+GW I   +G ++  G   +    ++K +EA AILEGL   ++ G       +PL +E DS EV 
Subjt:  KNHSSYLLWKPSDSNQWKLNTDASWNGNEKKGMGGMGWPICDSNGSLIETGCARIYKNWSIKCIEAKAILEGLEAYSSQGDFEGSRFKPLVVELDSIEVV

Query:  GAINEDFEDQSELSSIIREIKRKGEATRVVSFSKCSRISNTLAHKLAKAA
          +N   ED ++   ++ EI    ++  +++F+K  R +N  AH LA+ A
Subjt:  GAINEDFEDQSELSSIIREIKRKGEATRVVSFSKCSRISNTLAHKLAKAA

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]2.3e-1535.42Show/hide
Query:  WKPSDSNQWKLNTDASWNGNEKKGMGGMGWPICDSNGSLIETGCARIYKNWSIKCIEAKAILEGLEAYSSQ--GDFEGSRFKPLVVELDSIEVVGAINED
        WKP  SN WKLNTDA+W  +     GG+GW + D  G +I+  C  I    +I  +E  AI EGL A   +     +    +P+ +E DS+E +  ++  
Subjt:  WKPSDSNQWKLNTDASWNGNEKKGMGGMGWPICDSNGSLIETGCARIYKNWSIKCIEAKAILEGLEAYSSQ--GDFEGSRFKPLVVELDSIEVVGAINED

Query:  FEDQSELSSIIREIKRKGEATRVVSFSKCSRISNTLAHKLAKAA
         +DQ+E+  ++ EI +  E  ++VS    SR +N +AH LA+ A
Subjt:  FEDQSELSSIIREIKRKGEATRVVSFSKCSRISNTLAHKLAKAA

XP_038886170.1 uncharacterized protein LOC120076417 [Benincasa hispida]2.7e-0835.77Show/hide
Query:  WKPSDSNQWKLNTDASWNGNEKKGMGGMGWPICDSNGSLIETGCARIYKNWSIKCIEAKAILEGLEAYSSQGDFEGSRFKPLVVELDSI-EVVGAINEDF
        W PS    WKLN DASW  N K    G+GW   D    +   G   + +   +  +EA AI  GLE  SS           ++VE D + EV+  +N+D 
Subjt:  WKPSDSNQWKLNTDASWNGNEKKGMGGMGWPICDSNGSLIETGCARIYKNWSIKCIEAKAILEGLEAYSSQGDFEGSRFKPLVVELDSI-EVVGAINEDF

Query:  EDQSELSSIIREIKRKGEATRVVSFSKCSRISNTLAH
         D SE+S    E K +G    V+SFS   R  N LA+
Subjt:  EDQSELSSIIREIKRKGEATRVVSFSKCSRISNTLAH

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134122.7e-1434.51Show/hide
Query:  WKPSDSNQWKLNTDASWNGNEKKGMGGMGWPICDSNGSLIETGCARIYKNWSIKCIEAKAILEGLEAYSSQGDFEGSRFKPLVVELDSIEVVGAINEDFE
        WKP  SN WKLNT+A+W  +     GG+GW + D  G +I+  C  I    +I  +E  AI EGL A   +        +P+ +E DS+E +  ++   +
Subjt:  WKPSDSNQWKLNTDASWNGNEKKGMGGMGWPICDSNGSLIETGCARIYKNWSIKCIEAKAILEGLEAYSSQGDFEGSRFKPLVVELDSIEVVGAINEDFE

Query:  DQSELSSIIREIKRKGEATRVVSFSKCSRISNTLAHKLAKAA
        DQ+E+  ++ EI +  +   +VS    SR +N +AH LA+ A
Subjt:  DQSELSSIIREIKRKGEATRVVSFSKCSRISNTLAHKLAKAA

A0A6J1D5W1 uncharacterized protein LOC1110173295.9e-0931.65Show/hide
Query:  SDSNQWKLNTDASWNGNEKKGMGGMGWPICDSNGSLIETGCARIYKNWSIKCIEAKAILEGLEAYSSQGDFEGSRFKPLVVELDSIEVVGAINEDFEDQS
        S  N WKLNTDA+W+ N+  G+GG+GW I +    + + G   I     I  +E  AI  G+EA  S           L++E +S+E +  I    ++ +
Subjt:  SDSNQWKLNTDASWNGNEKKGMGGMGWPICDSNGSLIETGCARIYKNWSIKCIEAKAILEGLEAYSSQGDFEGSRFKPLVVELDSIEVVGAINEDFEDQS

Query:  ELSSIIREIKRKGEATRVVSFSKCSRISNTLAHKLAKAA
        E+  ++++IK  GE  R+  F    R  N++A ++A  A
Subjt:  ELSSIIREIKRKGEATRVVSFSKCSRISNTLAHKLAKAA

A0A6J1DNV9 uncharacterized protein LOC1110224031.5e-1232.67Show/hide
Query:  KNHSSYLLWKPSDSNQWKLNTDASWNGNEKKGMGGMGWPICDSNGSLIETGCARIYKNWSIKCIEAKAILEGLEAYSSQGDFEGSRFKPLVVELDSIEVV
        K  ++ L W+P   + W LN DASW+ +  +  GG+GW I   +G ++  G   +    ++K +EA AILEGL   ++ G       +PL +E DS EV 
Subjt:  KNHSSYLLWKPSDSNQWKLNTDASWNGNEKKGMGGMGWPICDSNGSLIETGCARIYKNWSIKCIEAKAILEGLEAYSSQGDFEGSRFKPLVVELDSIEVV

Query:  GAINEDFEDQSELSSIIREIKRKGEATRVVSFSKCSRISNTLAHKLAKAA
          +N   ED ++   ++ EI    ++  +++F+K  R +N  AH LA+ A
Subjt:  GAINEDFEDQSELSSIIREIKRKGEATRVVSFSKCSRISNTLAHKLAKAA

A0A6J1DSV1 uncharacterized protein LOC1110236081.1e-1535.42Show/hide
Query:  WKPSDSNQWKLNTDASWNGNEKKGMGGMGWPICDSNGSLIETGCARIYKNWSIKCIEAKAILEGLEAYSSQ--GDFEGSRFKPLVVELDSIEVVGAINED
        WKP  SN WKLNTDA+W  +     GG+GW + D  G +I+  C  I    +I  +E  AI EGL A   +     +    +P+ +E DS+E +  ++  
Subjt:  WKPSDSNQWKLNTDASWNGNEKKGMGGMGWPICDSNGSLIETGCARIYKNWSIKCIEAKAILEGLEAYSSQ--GDFEGSRFKPLVVELDSIEVVGAINED

Query:  FEDQSELSSIIREIKRKGEATRVVSFSKCSRISNTLAHKLAKAA
         +DQ+E+  ++ EI +  E  ++VS    SR +N +AH LA+ A
Subjt:  FEDQSELSSIIREIKRKGEATRVVSFSKCSRISNTLAHKLAKAA

A0A7C9A7V4 Uncharacterized protein1.7e-1134.03Show/hide
Query:  LLWKPSDSNQWKLNTDASWNGNEKKGMGGMGWPICDSNGSLIETGCARIYKNWSIKCIEAKAILEGLEAYSSQGDFEGSRFKPLVVELDSIEVVGAINED
        L W+P    Q K+N DAS     + GM G+G  + D NG +    C     NW ++ +EA A+L GL+    +G      F  L +E DS +V  A+N  
Subjt:  LLWKPSDSNQWKLNTDASWNGNEKKGMGGMGWPICDSNGSLIETGCARIYKNWSIKCIEAKAILEGLEAYSSQGDFEGSRFKPLVVELDSIEVVGAINED

Query:  FEDQSELSSIIREIKRKGEATRVVSFSKCSRISNTLAHKLAKAA
         +  +  S+ I +    G    V+SFS  SR++N +AH+LA+ A
Subjt:  FEDQSELSSIIREIKRKGEATRVVSFSKCSRISNTLAHKLAKAA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAACCACTCGAGTTACCTTCTTTGGAAGCCATCGGACTCAAACCAATGGAAATTGAACACAGATGCCTCATGGAACGGGAACGAGAAGAAGGGGATGGGTGGGAT
GGGATGGCCCATCTGTGACTCTAATGGGTCTTTGATTGAGACTGGATGCGCGAGAATCTACAAGAATTGGTCGATTAAATGTATTGAGGCCAAAGCAATTTTAGAAGGTT
TGGAAGCTTACTCTTCTCAAGGTGATTTCGAGGGCAGTAGATTCAAGCCCCTTGTCGTTGAATTGGACTCTATCGAGGTCGTTGGCGCCATCAACGAAGATTTCGAGGAC
CAATCGGAGTTGTCGTCGATTATTAGAGAAATCAAGAGGAAGGGCGAGGCAACGCGAGTGGTTTCCTTCTCCAAGTGCTCGAGGATCAGCAACACCCTGGCGCACAAGCT
TGCTAAAGCAGCTCCTTGCCATGGCAATTTCCGTTTCTTTTTTAGGCGCTCTCTCCCCCTGTTTTGGGAGATGAAGCAGTTTGGAAGGAAAGATTTTTCCCCAATTGGTT
TTCTTCGATTTAATCGAAGAGTTAGGTGTACCAGACTTTCAATTGTTTTAATGAATTTCTTTCTCGCCCTTCTCATCTGTAATACTTTATCAGTACCTGACATGTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGAACCACTCGAGTTACCTTCTTTGGAAGCCATCGGACTCAAACCAATGGAAATTGAACACAGATGCCTCATGGAACGGGAACGAGAAGAAGGGGATGGGTGGGAT
GGGATGGCCCATCTGTGACTCTAATGGGTCTTTGATTGAGACTGGATGCGCGAGAATCTACAAGAATTGGTCGATTAAATGTATTGAGGCCAAAGCAATTTTAGAAGGTT
TGGAAGCTTACTCTTCTCAAGGTGATTTCGAGGGCAGTAGATTCAAGCCCCTTGTCGTTGAATTGGACTCTATCGAGGTCGTTGGCGCCATCAACGAAGATTTCGAGGAC
CAATCGGAGTTGTCGTCGATTATTAGAGAAATCAAGAGGAAGGGCGAGGCAACGCGAGTGGTTTCCTTCTCCAAGTGCTCGAGGATCAGCAACACCCTGGCGCACAAGCT
TGCTAAAGCAGCTCCTTGCCATGGCAATTTCCGTTTCTTTTTTAGGCGCTCTCTCCCCCTGTTTTGGGAGATGAAGCAGTTTGGAAGGAAAGATTTTTCCCCAATTGGTT
TTCTTCGATTTAATCGAAGAGTTAGGTGTACCAGACTTTCAATTGTTTTAATGAATTTCTTTCTCGCCCTTCTCATCTGTAATACTTTATCAGTACCTGACATGTTTTAG
Protein sequenceShow/hide protein sequence
MKNHSSYLLWKPSDSNQWKLNTDASWNGNEKKGMGGMGWPICDSNGSLIETGCARIYKNWSIKCIEAKAILEGLEAYSSQGDFEGSRFKPLVVELDSIEVVGAINEDFED
QSELSSIIREIKRKGEATRVVSFSKCSRISNTLAHKLAKAAPCHGNFRFFFRRSLPLFWEMKQFGRKDFSPIGFLRFNRRVRCTRLSIVLMNFFLALLICNTLSVPDMF