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Spg005310 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg005310
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold6:36592977..36599035
RNA-Seq ExpressionSpg005310
SyntenySpg005310
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RVW45791.1 LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]1.3e-0628.97Show/hide
Query:  TWNLALRRGLFDREIDNWMILVEKISNVQLN-SNLDSIWWQLDNSGKYTTKSFFHKI-------------------IKSRVKL---GISLLGISPCVPNK
        +WN    R L D EID    L+  + +V L+ S+ DS  W L +SG ++ KSFF+ +                   + S+VK      +L+G+    P  
Subjt:  TWNLALRRGLFDREIDNWMILVEKISNVQLN-SNLDSIWWQLDNSGKYTTKSFFHKI-------------------IKSRVKL---GISLLGISPCVPNK

Query:  VENWLEEGLNAWNLSKKARVVASCAFRATIWSIWKERNSRSFEEK
        +E+ L         S + +++   A    IW +W+ERN+R FE+K
Subjt:  VENWLEEGLNAWNLSKKARVVASCAFRATIWSIWKERNSRSFEEK

RVW54886.1 hypothetical protein CK203_071597 [Vitis vinifera]7.9e-0729.66Show/hide
Query:  TWNLALRRGLFDREIDNWMILVEKISNVQLN-SNLDSIWWQLDNSGKYTTKSFFHKI-------------------IKSRVKL---GISLLGISPCVPNK
        +WN   RR L D EID    L+  + +V L+ S+ DS  W L +SG ++ KSFF+ +                   + S+VK      +L G+    P  
Subjt:  TWNLALRRGLFDREIDNWMILVEKISNVQLN-SNLDSIWWQLDNSGKYTTKSFFHKI-------------------IKSRVKL---GISLLGISPCVPNK

Query:  VENWLEEGLNAWNLSKKARVVASCAFRATIWSIWKERNSRSFEEK
        +E+ L         S + +++   A    IW +W+ERN+R FE+K
Subjt:  VENWLEEGLNAWNLSKKARVVASCAFRATIWSIWKERNSRSFEEK

RVX06852.1 hypothetical protein CK203_015005 [Vitis vinifera]1.3e-0629.14Show/hide
Query:  TWNLALRRGLFDREIDNWMILVEKISNVQLN-SNLDSIWWQLDNSGKYTTKSFFHKIIK-------------------SRVKL---------GISLLGIS
        +WN   RR L D EID    L+  + +V L+ S+ DS  W L +SG ++ KSFF+ + K                   S+VK            +L+G+ 
Subjt:  TWNLALRRGLFDREIDNWMILVEKISNVQLN-SNLDSIWWQLDNSGKYTTKSFFHKIIK-------------------SRVKL---------GISLLGIS

Query:  PCVPNKVENWLEEGLNAWNLSKKARVVASCAFRATIWSIWKERNSRSFEEK
           P  +E+ L         S + +++   A    IW +W+ERN+R FE+K
Subjt:  PCVPNKVENWLEEGLNAWNLSKKARVVASCAFRATIWSIWKERNSRSFEEK

XP_022151325.1 uncharacterized protein LOC111019288 [Momordica charantia]1.9e-0839.74Show/hide
Query:  VFDGWGQAHQTWNLALRRGLFDREIDNWMILVEKISNVQLNSNLDSIWWQLDNSGKYTTKSFFHKIIKSRVKLGISLL
        + D W    +TW+L  RRGLFDREI+NWM +V+++   ++    D   W  D +G +TTKS + K+ ++  KL  SL+
Subjt:  VFDGWGQAHQTWNLALRRGLFDREIDNWMILVEKISNVQLNSNLDSIWWQLDNSGKYTTKSFFHKIIKSRVKLGISLL

XP_038903703.1 ethanolamine-phosphate cytidylyltransferase isoform X2 [Benincasa hispida]7.9e-0761.36Show/hide
Query:  LNAWNLSKKARVVASCAFRATIWSIWKERNSRSFEEKSSSFDSF
        LN WNL  +A+VV SC F+A +W +WKERN+R+FE+KS SF SF
Subjt:  LNAWNLSKKARVVASCAFRATIWSIWKERNSRSFEEKSSSFDSF

TrEMBL top hitse value%identityAlignment
A0A438ED82 LINE-1 retrotransposable element ORF2 protein6.5e-0728.97Show/hide
Query:  TWNLALRRGLFDREIDNWMILVEKISNVQLN-SNLDSIWWQLDNSGKYTTKSFFHKI-------------------IKSRVKL---GISLLGISPCVPNK
        +WN    R L D EID    L+  + +V L+ S+ DS  W L +SG ++ KSFF+ +                   + S+VK      +L+G+    P  
Subjt:  TWNLALRRGLFDREIDNWMILVEKISNVQLN-SNLDSIWWQLDNSGKYTTKSFFHKI-------------------IKSRVKL---GISLLGISPCVPNK

Query:  VENWLEEGLNAWNLSKKARVVASCAFRATIWSIWKERNSRSFEEK
        +E+ L         S + +++   A    IW +W+ERN+R FE+K
Subjt:  VENWLEEGLNAWNLSKKARVVASCAFRATIWSIWKERNSRSFEEK

A0A438F4S1 Uncharacterized protein3.8e-0729.66Show/hide
Query:  TWNLALRRGLFDREIDNWMILVEKISNVQLN-SNLDSIWWQLDNSGKYTTKSFFHKI-------------------IKSRVKL---GISLLGISPCVPNK
        +WN   RR L D EID    L+  + +V L+ S+ DS  W L +SG ++ KSFF+ +                   + S+VK      +L G+    P  
Subjt:  TWNLALRRGLFDREIDNWMILVEKISNVQLN-SNLDSIWWQLDNSGKYTTKSFFHKI-------------------IKSRVKL---GISLLGISPCVPNK

Query:  VENWLEEGLNAWNLSKKARVVASCAFRATIWSIWKERNSRSFEEK
        +E+ L         S + +++   A    IW +W+ERN+R FE+K
Subjt:  VENWLEEGLNAWNLSKKARVVASCAFRATIWSIWKERNSRSFEEK

A0A438JD20 Uncharacterized protein6.5e-0729.14Show/hide
Query:  TWNLALRRGLFDREIDNWMILVEKISNVQLN-SNLDSIWWQLDNSGKYTTKSFFHKIIK-------------------SRVKL---------GISLLGIS
        +WN   RR L D EID    L+  + +V L+ S+ DS  W L +SG ++ KSFF+ + K                   S+VK            +L+G+ 
Subjt:  TWNLALRRGLFDREIDNWMILVEKISNVQLN-SNLDSIWWQLDNSGKYTTKSFFHKIIK-------------------SRVKL---------GISLLGIS

Query:  PCVPNKVENWLEEGLNAWNLSKKARVVASCAFRATIWSIWKERNSRSFEEK
           P  +E+ L         S + +++   A    IW +W+ERN+R FE+K
Subjt:  PCVPNKVENWLEEGLNAWNLSKKARVVASCAFRATIWSIWKERNSRSFEEK

A0A6J1DAV1 uncharacterized protein LOC1110192889.1e-0939.74Show/hide
Query:  VFDGWGQAHQTWNLALRRGLFDREIDNWMILVEKISNVQLNSNLDSIWWQLDNSGKYTTKSFFHKIIKSRVKLGISLL
        + D W    +TW+L  RRGLFDREI+NWM +V+++   ++    D   W  D +G +TTKS + K+ ++  KL  SL+
Subjt:  VFDGWGQAHQTWNLALRRGLFDREIDNWMILVEKISNVQLNSNLDSIWWQLDNSGKYTTKSFFHKIIKSRVKLGISLL

A0A7J6WJB4 Feruloyl coa ortho-hydroxylase1.1e-0628.57Show/hide
Query:  WNLALRRGLFDREIDNWMILVEKISNVQLNSNLDSIWWQLDNSGKYTTKSFFHKIIKSRVKLGISLLGISPCV--PNKVENWLEEGLNAWNLSKKARV--
        WNL LRR LF+RE   +  L   +  V  + + DS  W+   +G++T  SF+ + ++     G ++      +    ++ + LEE L AW   K   +  
Subjt:  WNLALRRGLFDREIDNWMILVEKISNVQLNSNLDSIWWQLDNSGKYTTKSFFHKIIKSRVKLGISLLGISPCV--PNKVENWLEEGLNAWNLSKKARV--

Query:  -VASCAFRATIWSIWKERNSRSFEEKSSSFDSFVNKLKGS
         +      ATIW +W+ RN   F  K SS +   N++K +
Subjt:  -VASCAFRATIWSIWKERNSRSFEEKSSSFDSFVNKLKGS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCAAGGAGTTCCTTCCCAATCCTTCTTCTCGAGAACAGAGGAATTTCTTGTGGCAGGCTGGGATTTGTGCTATTCTTTGGAGGCTTTGGGGTAAATCAGTCTTTGA
TGGTTGGGGTCAGGCGCATCAAACTTGGAACTTGGCTCTTCGAAGAGGGTTGTTTGACCGGGAAATAGATAATTGGATGATTTTGGTGGAGAAAATCAGCAATGTCCAGC
TGAATTCGAATCTGGACAGCATCTGGTGGCAGCTTGATAATAGTGGAAAATACACAACCAAATCCTTCTTCCACAAAATTATCAAATCCCGGGTCAAGCTTGGAATTTCA
TTGTTGGGCATCTCCCCTTGTGTTCCAAATAAGGTGGAAAATTGGCTGGAAGAGGGGCTCAATGCTTGGAACTTGTCTAAGAAGGCTAGAGTGGTGGCCAGCTGTGCTTT
TAGAGCTACCATTTGGAGTATTTGGAAGGAAAGAAATTCTAGATCGTTTGAAGAAAAGTCTTCTAGCTTCGATTCTTTTGTCAATAAACTCAAGGGTAGTGGTGTTCCTT
TAATGAGCCAAAGTCCTGTGGAGGAAGGTCAAAATCCCCAAGAAAGTGAAGCTCTTTGCCTAGGAAGTTTTACATGGTCAGGTGAATACTCAGGATTGGATCCAAAGGTT
CTCCTCGTTCGTGTTGCGATCGTAGTGGTTGGTAGAGAACTTGAGTCTAGAACTGCCTTAGCAACCATTGTGAAGGGCCAAATGCTATCAAGTGCCTCAAGCAAGTACAT
TGGACCTCTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGATCAAGGAGTTCCTTCCCAATCCTTCTTCTCGAGAACAGAGGAATTTCTTGTGGCAGGCTGGGATTTGTGCTATTCTTTGGAGGCTTTGGGGTAAATCAGTCTTTGA
TGGTTGGGGTCAGGCGCATCAAACTTGGAACTTGGCTCTTCGAAGAGGGTTGTTTGACCGGGAAATAGATAATTGGATGATTTTGGTGGAGAAAATCAGCAATGTCCAGC
TGAATTCGAATCTGGACAGCATCTGGTGGCAGCTTGATAATAGTGGAAAATACACAACCAAATCCTTCTTCCACAAAATTATCAAATCCCGGGTCAAGCTTGGAATTTCA
TTGTTGGGCATCTCCCCTTGTGTTCCAAATAAGGTGGAAAATTGGCTGGAAGAGGGGCTCAATGCTTGGAACTTGTCTAAGAAGGCTAGAGTGGTGGCCAGCTGTGCTTT
TAGAGCTACCATTTGGAGTATTTGGAAGGAAAGAAATTCTAGATCGTTTGAAGAAAAGTCTTCTAGCTTCGATTCTTTTGTCAATAAACTCAAGGGTAGTGGTGTTCCTT
TAATGAGCCAAAGTCCTGTGGAGGAAGGTCAAAATCCCCAAGAAAGTGAAGCTCTTTGCCTAGGAAGTTTTACATGGTCAGGTGAATACTCAGGATTGGATCCAAAGGTT
CTCCTCGTTCGTGTTGCGATCGTAGTGGTTGGTAGAGAACTTGAGTCTAGAACTGCCTTAGCAACCATTGTGAAGGGCCAAATGCTATCAAGTGCCTCAAGCAAGTACAT
TGGACCTCTGTGA
Protein sequenceShow/hide protein sequence
MIKEFLPNPSSREQRNFLWQAGICAILWRLWGKSVFDGWGQAHQTWNLALRRGLFDREIDNWMILVEKISNVQLNSNLDSIWWQLDNSGKYTTKSFFHKIIKSRVKLGIS
LLGISPCVPNKVENWLEEGLNAWNLSKKARVVASCAFRATIWSIWKERNSRSFEEKSSSFDSFVNKLKGSGVPLMSQSPVEEGQNPQESEALCLGSFTWSGEYSGLDPKV
LLVRVAIVVVGRELESRTALATIVKGQMLSSASSKYIGPL