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Spg005337 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg005337
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold6:36322333..36323046
RNA-Seq ExpressionSpg005337
SyntenySpg005337
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4273082.1 unnamed protein product [Prunus armeniaca]3.9e-1338.06Show/hide
Query:  WTPPPAGLLKINVDASWNNDQRRGGVGWIIRDSQGSSVGMGSAKIKRGWSIRTMEAVAVKEGLKAYLAAKGESQSRILIESDSIEVVRALNHEIEDASET
        W  PP G+LK+N DA+W +  + GGVGW++RDS G  V  G     RG S   MEA A++E L   +A      S++ +ESDS++V+R +  E       
Subjt:  WTPPPAGLLKINVDASWNNDQRRGGVGWIIRDSQGSSVGMGSAKIKRGWSIRTMEAVAVKEGLKAYLAAKGESQSRILIESDSIEVVRALNHEIEDASET

Query:  RVILDEIHQLSSLAGEVSFVKCPRVVNGIAHLIA
          I+ +I QL        F+  PR  N  AH IA
Subjt:  RVILDEIHQLSSLAGEVSFVKCPRVVNGIAHLIA

PNT77801.1 hypothetical protein BRADI_1g69052v3, partial [Brachypodium distachyon]6.7e-1334.78Show/hide
Query:  QEVWTPPPAGLLKINVDASWNNDQRRGGVGWIIRDSQGSSVGMGSAKIKRGWSIRTMEAVAVKEGLKAYLAAKGESQSRILIESDSIEVVRALNHEIEDA
        +E+W  PPA  +KINVDAS++ D+  G +G +IRD+ G  +   + K+     + + E  AV+ GL+  +A   +   RI+I  D++EVV ALN      
Subjt:  QEVWTPPPAGLLKINVDASWNNDQRRGGVGWIIRDSQGSSVGMGSAKIKRGWSIRTMEAVAVKEGLKAYLAAKGESQSRILIESDSIEVVRALNHEIEDA

Query:  SETRVILDEIHQLSSLAGEVSFVKCPRVVNGIAHLIAR
        S    I +E   L    G+   + C R  N +AH +AR
Subjt:  SETRVILDEIHQLSSLAGEVSFVKCPRVVNGIAHLIAR

VFQ81500.1 unnamed protein product [Cuscuta campestris]4.7e-1441.43Show/hide
Query:  EVWTPPPAGLLKINVDASWNNDQRRGGVGWIIRDSQGSSVGMGSAKIKRGWSIRTMEAVAVKEGLKAYLAAKGESQSRILIESDSIEVVRALNHEIEDAS
        E W  PP   LK+NVDAS     R  G+G+I+RD +G  V   S K +  +  R  EA+AVKE L +++ +KG  Q  +L+E+D  EVV +LN  I D S
Subjt:  EVWTPPPAGLLKINVDASWNNDQRRGGVGWIIRDSQGSSVGMGSAKIKRGWSIRTMEAVAVKEGLKAYLAAKGESQSRILIESDSIEVVRALNHEIEDAS

Query:  ETRVILDEIHQLSSL-AGEVSFVKCPRVVNGIAHLIARST
            I+++  +L  L AG+++F   PR  N  AHL+ARS+
Subjt:  ETRVILDEIHQLSSL-AGEVSFVKCPRVVNGIAHLIARST

VFR02953.1 unnamed protein product [Cuscuta campestris]1.4e-1340.56Show/hide
Query:  GNQEVWTPPPAGLLKINVDASWNNDQRRGGVGWIIRDSQGSSVGMGSAKIKRGWSIRTMEAVAVKEGLKAYLAAKGESQSRILIESDSIEVVRALNHEIE
        G  + W  PP   LK+NVDAS     R  G+G+I+RD +G  V   S K +  +  R  EA+AVKE L +++ +KG  Q  +L+E+D  EVV +LN  I 
Subjt:  GNQEVWTPPPAGLLKINVDASWNNDQRRGGVGWIIRDSQGSSVGMGSAKIKRGWSIRTMEAVAVKEGLKAYLAAKGESQSRILIESDSIEVVRALNHEIE

Query:  DASETRVILDEIHQLSSL-AGEVSFVKCPRVVNGIAHLIARST
        D S    I+++  +L  L AG+++F   PR  N  AHL+ARS+
Subjt:  DASETRVILDEIHQLSSL-AGEVSFVKCPRVVNGIAHLIARST

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]3.9e-1336.69Show/hide
Query:  NQEVWTPPPAGLLKINVDASWNNDQRRGGVGWIIRDSQGSSVGMGSAKIKRGWSIRTMEAVAVKEGLKAYLAAKGESQSRILIESDSIEVVRALNHEIED
        N+  W PPP  +  +N DASW++   RGG+GWIIR   G  V  G+  ++   +++ +EA A+ EGL+  L   G  +  + IE+DS EV   LN + ED
Subjt:  NQEVWTPPPAGLLKINVDASWNNDQRRGGVGWIIRDSQGSSVGMGSAKIKRGWSIRTMEAVAVKEGLKAYLAAKGESQSRILIESDSIEVVRALNHEIED

Query:  ASETRVILDEIHQLSSLAGEVSFVKCPRVVNGIAHLIAR
         ++T  +++EI  L      ++F K  R  NG AH +A+
Subjt:  ASETRVILDEIHQLSSLAGEVSFVKCPRVVNGIAHLIAR

TrEMBL top hitse value%identityAlignment
A0A1J3ELU2 RNase H domain-containing protein5.0e-1435.37Show/hide
Query:  EQRKGRKDNQWMLSSEN----QGNQEVWTPPPAGLLKINVDASWNNDQRRGGVGWIIRDSQGSSVGMGSAKIKRGWSIRTMEAVAVKEGLKAYLAAKGES
        E+ K RK+NQ  L  +N       +E W PPP+G +K NVD +WN D    G+GW++RDS+G  + +G  KI R  SI  +E  A++    A L     +
Subjt:  EQRKGRKDNQWMLSSEN----QGNQEVWTPPPAGLLKINVDASWNNDQRRGGVGWIIRDSQGSSVGMGSAKIKRGWSIRTMEAVAVKEGLKAYLAAKGES

Query:  QSRILIESDSIEVVRALNHEIEDASETRVILDEIHQLSSLAGEVSFVKCPRVVNGIAHLIARST
           I+ E+DS E V AL+ + E   + R I  +IH L +       +  PR  N +A  IA+ +
Subjt:  QSRILIESDSIEVVRALNHEIEDASETRVILDEIHQLSSLAGEVSFVKCPRVVNGIAHLIARST

A0A484LY53 CCHC-type domain-containing protein2.3e-1441.43Show/hide
Query:  EVWTPPPAGLLKINVDASWNNDQRRGGVGWIIRDSQGSSVGMGSAKIKRGWSIRTMEAVAVKEGLKAYLAAKGESQSRILIESDSIEVVRALNHEIEDAS
        E W  PP   LK+NVDAS     R  G+G+I+RD +G  V   S K +  +  R  EA+AVKE L +++ +KG  Q  +L+E+D  EVV +LN  I D S
Subjt:  EVWTPPPAGLLKINVDASWNNDQRRGGVGWIIRDSQGSSVGMGSAKIKRGWSIRTMEAVAVKEGLKAYLAAKGESQSRILIESDSIEVVRALNHEIEDAS

Query:  ETRVILDEIHQLSSL-AGEVSFVKCPRVVNGIAHLIARST
            I+++  +L  L AG+++F   PR  N  AHL+ARS+
Subjt:  ETRVILDEIHQLSSL-AGEVSFVKCPRVVNGIAHLIARST

A0A484NPU1 Uncharacterized protein6.6e-1440.56Show/hide
Query:  GNQEVWTPPPAGLLKINVDASWNNDQRRGGVGWIIRDSQGSSVGMGSAKIKRGWSIRTMEAVAVKEGLKAYLAAKGESQSRILIESDSIEVVRALNHEIE
        G  + W  PP   LK+NVDAS     R  G+G+I+RD +G  V   S K +  +  R  EA+AVKE L +++ +KG  Q  +L+E+D  EVV +LN  I 
Subjt:  GNQEVWTPPPAGLLKINVDASWNNDQRRGGVGWIIRDSQGSSVGMGSAKIKRGWSIRTMEAVAVKEGLKAYLAAKGESQSRILIESDSIEVVRALNHEIE

Query:  DASETRVILDEIHQLSSL-AGEVSFVKCPRVVNGIAHLIARST
        D S    I+++  +L  L AG+++F   PR  N  AHL+ARS+
Subjt:  DASETRVILDEIHQLSSL-AGEVSFVKCPRVVNGIAHLIARST

A0A6J1DNV9 uncharacterized protein LOC1110224031.9e-1336.69Show/hide
Query:  NQEVWTPPPAGLLKINVDASWNNDQRRGGVGWIIRDSQGSSVGMGSAKIKRGWSIRTMEAVAVKEGLKAYLAAKGESQSRILIESDSIEVVRALNHEIED
        N+  W PPP  +  +N DASW++   RGG+GWIIR   G  V  G+  ++   +++ +EA A+ EGL+  L   G  +  + IE+DS EV   LN + ED
Subjt:  NQEVWTPPPAGLLKINVDASWNNDQRRGGVGWIIRDSQGSSVGMGSAKIKRGWSIRTMEAVAVKEGLKAYLAAKGESQSRILIESDSIEVVRALNHEIED

Query:  ASETRVILDEIHQLSSLAGEVSFVKCPRVVNGIAHLIAR
         ++T  +++EI  L      ++F K  R  NG AH +A+
Subjt:  ASETRVILDEIHQLSSLAGEVSFVKCPRVVNGIAHLIAR

A0A6J5UAY2 Reverse transcriptase domain-containing protein1.9e-1338.06Show/hide
Query:  WTPPPAGLLKINVDASWNNDQRRGGVGWIIRDSQGSSVGMGSAKIKRGWSIRTMEAVAVKEGLKAYLAAKGESQSRILIESDSIEVVRALNHEIEDASET
        W  PP G+LK+N DA+W +  + GGVGW++RDS G  V  G     RG S   MEA A++E L   +A      S++ +ESDS++V+R +  E       
Subjt:  WTPPPAGLLKINVDASWNNDQRRGGVGWIIRDSQGSSVGMGSAKIKRGWSIRTMEAVAVKEGLKAYLAAKGESQSRILIESDSIEVVRALNHEIEDASET

Query:  RVILDEIHQLSSLAGEVSFVKCPRVVNGIAHLIA
          I+ +I QL        F+  PR  N  AH IA
Subjt:  RVILDEIHQLSSLAGEVSFVKCPRVVNGIAHLIA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein5.7e-1029.71Show/hide
Query:  ELSRQIRRNLEEQRKGRKDNQWMLSSENQGNQEV-WTPPPAGLLKINVDASWNNDQRRGGVGWIIRDSQGSSVGMGSAKIKRGWSIRTMEAVAVKEGLKA
        E+ R+   + EE    R+        + + N  V W  PP   +K N DA+W  +  R G+GWI+R+  G  + MG+  + R  ++   E  A++    A
Subjt:  ELSRQIRRNLEEQRKGRKDNQWMLSSENQGNQEV-WTPPPAGLLKINVDASWNNDQRRGGVGWIIRDSQGSSVGMGSAKIKRGWSIRTMEAVAVKEGLKA

Query:  YLAAKGESQSRILIESDSIEVVRALNHEIEDASETRVILDEIHQLSSLAGEVSFVKCPRVVNGIAHLIARSTAGF
         L     +  RI+ ESD+  +V  LN + +     +  L++I QL     EV F   PR  N +A  IAR +  F
Subjt:  YLAAKGESQSRILIESDSIEVVRALNHEIEDASETRVILDEIHQLSSLAGEVSFVKCPRVVNGIAHLIARSTAGF

AT3G23320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein3.2e-0526.45Show/hide
Query:  KGRKDNQWMLSSENQGNQEVWTPPPAGLLKINVDASWNNDQRRGGVGWIIRDSQGSSVGMGSAKIKRGWSIRTMEAVAVKEGLKAYLAAKGESQSRILIE
        K + D+            + W  P A  +K N D S +  ++  G+ WIIR+SQG+ +  G  K +   +I+  E  A+   + A   A      R+  E
Subjt:  KGRKDNQWMLSSENQGNQEVWTPPPAGLLKINVDASWNNDQRRGGVGWIIRDSQGSSVGMGSAKIKRGWSIRTMEAVAVKEGLKAYLAAKGESQSRILIE

Query:  SDSIEVVRALNHEIEDASETRVILDEIHQLSSLAGEVSFVKCPRVVNGIAHLIAR
         D+I V R + ++ E     R  L+ I Q S     V F    R  N    ++A+
Subjt:  SDSIEVVRALNHEIEDASETRVILDEIHQLSSLAGEVSFVKCPRVVNGIAHLIAR

AT4G09775.1 BEST Arabidopsis thaliana protein match is: Ribonuclease H-like superfamily protein (TAIR:AT2G02650.1)2.2e-0634.78Show/hide
Query:  GNQEVWTPPPAGLLKINVDASWNNDQRRGGVGWIIRDSQGSSVGMGSAKIKRGWSIRTMEAVAVKEGLK
        G  + W+PPP G LK N D+ +   +      WIIRDS G  +  G AK+++ +S    EA+     L+
Subjt:  GNQEVWTPPPAGLLKINVDASWNNDQRRGGVGWIIRDSQGSSVGMGSAKIKRGWSIRTMEAVAVKEGLK

AT4G29090.1 Ribonuclease H-like superfamily protein3.2e-1329.55Show/hide
Query:  QELSRQIRRNLEEQR-KGRKDNQWMLSSENQGNQEVWTPPPAGLLKINVDASWNNDQRRGGVGWIIRDSQGSSVGMGSAKIKRGWSIRTMEAVAVKEGLK
        QE+ R+   +LEE R +   ++       N+ +   W PPP   +K N DA+WN D  R G+GW++R+ +G    MG+  + +  S+   E  A++    
Subjt:  QELSRQIRRNLEEQR-KGRKDNQWMLSSENQGNQEVWTPPPAGLLKINVDASWNNDQRRGGVGWIIRDSQGSSVGMGSAKIKRGWSIRTMEAVAVKEGLK

Query:  AYLAAKGESQSRILIESDSIEVVRALNHEIEDASETRVILDEIHQLSSLAGEVSFVKCPRVVNGIAHLIARSTAGF
        A L+      + ++ ESDS  ++  LN++ E     +  + ++ +L S   EV FV  PR  N +A  +AR +  F
Subjt:  AYLAAKGESQSRILIESDSIEVVRALNHEIEDASETRVILDEIHQLSSLAGEVSFVKCPRVVNGIAHLIARSTAGF

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein7.7e-0725.97Show/hide
Query:  MLSSENQGNQEV-------WTPPPAGLLKINVDASWNNDQRRGGVGWIIRDSQGSSVGMGSAKIKRGWSIRTMEAVAVKEGLKAYLAAKGESQSRILIES
        M + +  GN+         W+PP    LK N DAS +      G+GWI+R+SQG+ +  G  K +      T E       + A  A+ G    +++ E 
Subjt:  MLSSENQGNQEV-------WTPPPAGLLKINVDASWNNDQRRGGVGWIIRDSQGSSVGMGSAKIKRGWSIRTMEAVAVKEGLKAYLAAKGESQSRILIES

Query:  DSIEVVRALNHEIEDASETRVILDEIHQLSSLAGEVSFVKCPRVVNGIAHLIAR
        D+  + R +N +  +    +  LD I         + F    R  NG A  +A+
Subjt:  DSIEVVRALNHEIEDASETRVILDEIHQLSSLAGEVSFVKCPRVVNGIAHLIAR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGATCAAGCAGATCAACAGTGCAAGAACTCTCCAGACAAATCAGAAGGAATTTGGAGGAGCAAAGGAAAGGCAGAAAAGACAATCAATGGATGCTATCCTCGGAGAA
CCAGGGGAATCAGGAAGTATGGACTCCCCCACCGGCTGGTCTGCTCAAAATTAATGTGGATGCCTCATGGAACAATGATCAGAGGAGAGGTGGTGTGGGTTGGATAATCC
GTGATTCTCAAGGATCTTCTGTAGGAATGGGCAGTGCAAAGATTAAGAGAGGATGGTCAATCCGGACGATGGAGGCAGTGGCTGTCAAGGAGGGATTAAAAGCTTACCTG
GCAGCAAAAGGAGAATCTCAATCCCGAATCCTCATTGAATCGGATTCGATTGAGGTCGTTAGAGCTCTGAACCACGAGATTGAAGATGCTTCAGAAACGAGGGTGATCTT
GGACGAAATCCATCAATTATCGTCCCTGGCCGGTGAAGTCTCGTTTGTGAAGTGCCCTCGAGTGGTCAACGGAATCGCGCACCTGATCGCGCGTTCGACGGCTGGATTTT
GGCCGAAGTCAGGCATATCTTCCGTAGTTGAAGATGGCAGTTTTGGGCAATTTATTTCTTCCACGCTGGAAGATAAATGGAGTTGTTGGGGAGGGAACTTCCCGCTTTTT
GTATCCCATTTATTGTGGAGAGAATCTGGTGTATTAAACGTTTCTGGTAGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGATCAAGCAGATCAACAGTGCAAGAACTCTCCAGACAAATCAGAAGGAATTTGGAGGAGCAAAGGAAAGGCAGAAAAGACAATCAATGGATGCTATCCTCGGAGAA
CCAGGGGAATCAGGAAGTATGGACTCCCCCACCGGCTGGTCTGCTCAAAATTAATGTGGATGCCTCATGGAACAATGATCAGAGGAGAGGTGGTGTGGGTTGGATAATCC
GTGATTCTCAAGGATCTTCTGTAGGAATGGGCAGTGCAAAGATTAAGAGAGGATGGTCAATCCGGACGATGGAGGCAGTGGCTGTCAAGGAGGGATTAAAAGCTTACCTG
GCAGCAAAAGGAGAATCTCAATCCCGAATCCTCATTGAATCGGATTCGATTGAGGTCGTTAGAGCTCTGAACCACGAGATTGAAGATGCTTCAGAAACGAGGGTGATCTT
GGACGAAATCCATCAATTATCGTCCCTGGCCGGTGAAGTCTCGTTTGTGAAGTGCCCTCGAGTGGTCAACGGAATCGCGCACCTGATCGCGCGTTCGACGGCTGGATTTT
GGCCGAAGTCAGGCATATCTTCCGTAGTTGAAGATGGCAGTTTTGGGCAATTTATTTCTTCCACGCTGGAAGATAAATGGAGTTGTTGGGGAGGGAACTTCCCGCTTTTT
GTATCCCATTTATTGTGGAGAGAATCTGGTGTATTAAACGTTTCTGGTAGTTAA
Protein sequenceShow/hide protein sequence
MGSSRSTVQELSRQIRRNLEEQRKGRKDNQWMLSSENQGNQEVWTPPPAGLLKINVDASWNNDQRRGGVGWIIRDSQGSSVGMGSAKIKRGWSIRTMEAVAVKEGLKAYL
AAKGESQSRILIESDSIEVVRALNHEIEDASETRVILDEIHQLSSLAGEVSFVKCPRVVNGIAHLIARSTAGFWPKSGISSVVEDGSFGQFISSTLEDKWSCWGGNFPLF
VSHLLWRESGVLNVSGS