CuGenDBv2

Gene ID	Spg005342
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	RNA polymerase II elongation factor
Genome location	scaffold6:36373068..36373730
RNA-Seq Expression	Spg005342
Synteny	Spg005342
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7015562.1 hypothetical protein SDJN02_23198, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.7e-98

83.94

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Query:  ETKDSN-AAHIVEIPVDQDHHQNHNQNLMISVIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTS
        ETKDS  AAH+VEIP +       NQN+MISVI+QHPLRQISESSGHLLLLKLWQR+EHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTS
Subjt:  ETKDSN-AAHIVEIPVDQDHHQNHNQNLMISVIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTS

Query:  SDPNACRKWWAPAVAVAATSGVFVIVVQVKLWLYWKAAGQLQKERNENRALTRCVQELRMKGSCFNLCKEPQSGKRMKSSSVEIKWGPLTWLSRNFITIS
        SDPN C KWW P VA+ ATSGVFVIVVQ+KLWLYWKA+ QLQ+E++ENRALTRCVQELRMKGSCFNL KEPQ G RMKSSSVEIKWGPLTWLSRNF+TI 
Subjt:  SDPNACRKWWAPAVAVAATSGVFVIVVQVKLWLYWKAAGQLQKERNENRALTRCVQELRMKGSCFNLCKEPQSGKRMKSSSVEIKWGPLTWLSRNFITIS

Query:  LVCFAGLVFGASKFILCG
        L+CF+G+VFGASKFILCG
Subjt:  LVCFAGLVFGASKFILCG

XP_004149573.1 uncharacterized protein LOC101219596 [Cucumis sativus]

3.0e-100

84.09

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Query:  MAETKDSNAAHIVEIPVDQDHHQNHNQNLMISVIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFT
        MAETKDS AAHIVEIPV+Q   +NH QNLMISVIQ HPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETK+ESLKQQIFQLCC+FFLFHALSLTLL+T
Subjt:  MAETKDSNAAHIVEIPVDQDHHQNHNQNLMISVIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFT

Query:  SSDPNACRKWWAPAVAVAATSGVFVIVVQVKLWLYWKAAGQLQKERNENRALTRCVQELRMKGSCFNLCKEPQSGKRMKSSSVEIKWGPLTWLSRNFITI
        SSDP  C+KWW PAV + ATSGVFVIVVQ+KLW+YWKA GQLQKE+ ENRALTRCVQELRMKGSCFNL KEPQ G RMKSSSVEIKWGPLTW SRNFITI
Subjt:  SSDPNACRKWWAPAVAVAATSGVFVIVVQVKLWLYWKAAGQLQKERNENRALTRCVQELRMKGSCFNLCKEPQSGKRMKSSSVEIKWGPLTWLSRNFITI

Query:  SLVCFAGLVFGASKFILCGF
        SL+ F+ ++F  SKFILCGF
Subjt:  SLVCFAGLVFGASKFILCGF

XP_008449068.1 PREDICTED: uncharacterized protein LOC103491049 [Cucumis melo]

1.5e-99

83.18

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Query:  MAETKDSNAAHIVEIPVDQDHHQNHNQNLMISVIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFT
        MA+TKDS AAHIVEIPV+Q   +NH QNLMISVIQ HPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETK+ESLKQQIFQLCC+FFLFHALSLTLL+T
Subjt:  MAETKDSNAAHIVEIPVDQDHHQNHNQNLMISVIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFT

Query:  SSDPNACRKWWAPAVAVAATSGVFVIVVQVKLWLYWKAAGQLQKERNENRALTRCVQELRMKGSCFNLCKEPQSGKRMKSSSVEIKWGPLTWLSRNFITI
        SSDP  C+KWW PAV + ATSGVFVIVVQ+KLW+YWKA GQLQ+E++ENRALTRC QELRMKGSCFNL KEPQ G RMKSSSVEIKWGPLTW SRNFI I
Subjt:  SSDPNACRKWWAPAVAVAATSGVFVIVVQVKLWLYWKAAGQLQKERNENRALTRCVQELRMKGSCFNLCKEPQSGKRMKSSSVEIKWGPLTWLSRNFITI

Query:  SLVCFAGLVFGASKFILCGF
        SL+ F+ +VF ASKFILCGF
Subjt:  SLVCFAGLVFGASKFILCGF

XP_023553388.1 uncharacterized protein LOC111810817 [Cucurbita pepo subsp. pepo]

3.3e-99

82.95

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Query:  ETKDSNAAHIVEIPVDQDHHQNHNQNLMISVIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSS
        ET+DS AAH+VEIP +       NQN+MISVI+QHPLRQISESSGHLLLLKLWQR+EHLFGLR+GRRETK+ESLKQQIFQLCCYFFLFHALSLTLLFTSS
Subjt:  ETKDSNAAHIVEIPVDQDHHQNHNQNLMISVIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSS

Query:  DPNACRKWWAPAVAVAATSGVFVIVVQVKLWLYWKAAGQLQKERNENRALTRCVQELRMKGSCFNLCKEPQSGKRMKSSSVEIKWGPLTWLSRNFITISL
        DPN C KWW P VA+ ATSGVFVIVVQ+KLWLYWKA+ QLQ+E++ENRALTRCVQELRMKGSCFNL KEPQ G RMKSSSVEIKWGPLTWLSRNF+TI L
Subjt:  DPNACRKWWAPAVAVAATSGVFVIVVQVKLWLYWKAAGQLQKERNENRALTRCVQELRMKGSCFNLCKEPQSGKRMKSSSVEIKWGPLTWLSRNFITISL

Query:  VCFAGLVFGASKFILCG
        +CF+G+VFGASKFILCG
Subjt:  VCFAGLVFGASKFILCG

XP_038905570.1 uncharacterized protein LOC120091553 [Benincasa hispida]

9.7e-99

84.09

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Query:  MAETKDSNAAHIVEIPVDQDHHQNHNQNLMISVIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFT
        MAETKDS  AHIVEIPV+Q++H   NQN MISVIQ HPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETK+ESLKQQIFQLCC+FFLFHALSLTLL+T
Subjt:  MAETKDSNAAHIVEIPVDQDHHQNHNQNLMISVIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFT

Query:  SSDPNACRKWWAPAVAVAATSGVFVIVVQVKLWLYWKAAGQLQKERNENRALTRCVQELRMKGSCFNLCKEPQSGKRMKSSSVEIKWGPLTWLSRNFITI
        SSDPN C+KWW PAVA+ ATSGVFVIVVQ+KLWLYWKA+GQLQ+E+ ENRALTRCVQELRMKGSCFNL KEPQ G RMKSSSVEIKWGPLTW SRNFITI
Subjt:  SSDPNACRKWWAPAVAVAATSGVFVIVVQVKLWLYWKAAGQLQKERNENRALTRCVQELRMKGSCFNLCKEPQSGKRMKSSSVEIKWGPLTWLSRNFITI

Query:  SLVCFAGLVFGASKFILCGF
         L+ F+ +VF ASKFILC F
Subjt:  SLVCFAGLVFGASKFILCGF

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L2U7 Uncharacterized protein

1.5e-100

84.09

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Query:  MAETKDSNAAHIVEIPVDQDHHQNHNQNLMISVIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFT
        MAETKDS AAHIVEIPV+Q   +NH QNLMISVIQ HPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETK+ESLKQQIFQLCC+FFLFHALSLTLL+T
Subjt:  MAETKDSNAAHIVEIPVDQDHHQNHNQNLMISVIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFT

Query:  SSDPNACRKWWAPAVAVAATSGVFVIVVQVKLWLYWKAAGQLQKERNENRALTRCVQELRMKGSCFNLCKEPQSGKRMKSSSVEIKWGPLTWLSRNFITI
        SSDP  C+KWW PAV + ATSGVFVIVVQ+KLW+YWKA GQLQKE+ ENRALTRCVQELRMKGSCFNL KEPQ G RMKSSSVEIKWGPLTW SRNFITI
Subjt:  SSDPNACRKWWAPAVAVAATSGVFVIVVQVKLWLYWKAAGQLQKERNENRALTRCVQELRMKGSCFNLCKEPQSGKRMKSSSVEIKWGPLTWLSRNFITI

Query:  SLVCFAGLVFGASKFILCGF
        SL+ F+ ++F  SKFILCGF
Subjt:  SLVCFAGLVFGASKFILCGF

A0A1S3BL81 uncharacterized protein LOC103491049

7.3e-100

83.18

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Query:  MAETKDSNAAHIVEIPVDQDHHQNHNQNLMISVIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFT
        MA+TKDS AAHIVEIPV+Q   +NH QNLMISVIQ HPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETK+ESLKQQIFQLCC+FFLFHALSLTLL+T
Subjt:  MAETKDSNAAHIVEIPVDQDHHQNHNQNLMISVIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFT

Query:  SSDPNACRKWWAPAVAVAATSGVFVIVVQVKLWLYWKAAGQLQKERNENRALTRCVQELRMKGSCFNLCKEPQSGKRMKSSSVEIKWGPLTWLSRNFITI
        SSDP  C+KWW PAV + ATSGVFVIVVQ+KLW+YWKA GQLQ+E++ENRALTRC QELRMKGSCFNL KEPQ G RMKSSSVEIKWGPLTW SRNFI I
Subjt:  SSDPNACRKWWAPAVAVAATSGVFVIVVQVKLWLYWKAAGQLQKERNENRALTRCVQELRMKGSCFNLCKEPQSGKRMKSSSVEIKWGPLTWLSRNFITI

Query:  SLVCFAGLVFGASKFILCGF
        SL+ F+ +VF ASKFILCGF
Subjt:  SLVCFAGLVFGASKFILCGF

A0A2P6QLA8 Uncharacterized protein

5.8e-73

63.06

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Query:  MAETKDSNAAHIVEIPVDQDHHQNHNQNL-MISVIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLF
        MAE KD +  H+VEIPVD++H Q  + ++ +IS IQ HPL +ISES GHLLLLKLW+R+E LFG RI RRET+++ ++++IFQLCC+F +FHA  LT+LF
Subjt:  MAETKDSNAAHIVEIPVDQDHHQNHNQNL-MISVIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLF

Query:  TS---SDPNACRKWWAPAVAVAATSGVFVIVVQVKLWLYWKAAGQLQKERNENRALTRCVQELRMKGSCFNLCKEPQSGKRMKSSSVEIKWGPLTWLSRN
        TS   S+  +C+KWW P++   +TS VFV++VQV LW YWK  GQLQ+E+ ENRAL RC+QELRMKG+ F+L KEPQSGKR+KSSSVEIKW P+TW S+N
Subjt:  TS---SDPNACRKWWAPAVAVAATSGVFVIVVQVKLWLYWKAAGQLQKERNENRALTRCVQELRMKGSCFNLCKEPQSGKRMKSSSVEIKWGPLTWLSRN

Query:  FITISLVCFAGLVFGASKFILC
         ITI LVCFAGLVF ASK +LC
Subjt:  FITISLVCFAGLVFGASKFILC

A0A6J1EWB5 uncharacterized protein LOC111438709

2.6e-97

83.49

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Query:  ETKDSN-AAHIVEIPVDQDHHQNHNQNLMISVIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTS
        ETKDS  AAH+VEIP +       NQN+MISVI+QHPLRQISESSGHLLLLKLWQR+EHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTS
Subjt:  ETKDSN-AAHIVEIPVDQDHHQNHNQNLMISVIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTS

Query:  SDPNACRKWWAPAVAVAATSGVFVIVVQVKLWLYWKAAGQLQKERNENRALTRCVQELRMKGSCFNLCKEPQSGKRMKSSSVEIKWGPLTWLSRNFITIS
        SDPN C KWW P VA+ ATSGVFVIVVQ+KLWLYWKA+ QLQ+E++ENRALTRCVQELRMKGSCFNL KEPQ G RMKSSSVEIKWGPLT LSRNF+TI 
Subjt:  SDPNACRKWWAPAVAVAATSGVFVIVVQVKLWLYWKAAGQLQKERNENRALTRCVQELRMKGSCFNLCKEPQSGKRMKSSSVEIKWGPLTWLSRNFITIS

Query:  LVCFAGLVFGASKFILCG
        L+CF+G+VFGASKFILCG
Subjt:  LVCFAGLVFGASKFILCG

A0A6J1HN07 uncharacterized protein LOC111465114

6.8e-98

83.94

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Query:  ETKDSNAA-HIVEIPVDQDHHQNHNQNLMISVIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTS
        ETKDS AA HIVEIP +       NQN+MISVI+QHPLRQISESSGHLLLLKLWQR+EHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTS
Subjt:  ETKDSNAA-HIVEIPVDQDHHQNHNQNLMISVIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTS

Query:  SDPNACRKWWAPAVAVAATSGVFVIVVQVKLWLYWKAAGQLQKERNENRALTRCVQELRMKGSCFNLCKEPQSGKRMKSSSVEIKWGPLTWLSRNFITIS
        SDPN C KWW P VA+ ATSGVFVIVVQ+KLWLYWKA+ QLQ+E++ENRALTR VQELRMKGSCFNL KEPQ G RMKSSSVEIKWGPLTWLSRNF+TI 
Subjt:  SDPNACRKWWAPAVAVAATSGVFVIVVQVKLWLYWKAAGQLQKERNENRALTRCVQELRMKGSCFNLCKEPQSGKRMKSSSVEIKWGPLTWLSRNFITIS

Query:  LVCFAGLVFGASKFILCG
        L+CF+G+VFGASKFILCG
Subjt:  LVCFAGLVFGASKFILCG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G12870.1 unknown protein

4.4e-25

34.55

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Query:  QHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLF-------TSSDPNACRKWWAPAVAVAATSGVFVIVV
        +HPL QI+++  H LLLK W ++E L   R+  +E++++S++++I QL  +FFLFH++SL LLF       +S+  +AC++ W P++    +S   +  V
Subjt:  QHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLF-------TSSDPNACRKWWAPAVAVAATSGVFVIVV

Query:  QVKLWLYWKAAGQLQKERNENRALTRCVQELRMKGSCFNLCKEPQSGKRMKSSSVEIKWGPL-TWLSRNFITISLVCFAGLVFGASKFILC
        + K  +       L++E+ + + L +CV+EL+ KG  F+L KE  + +R KS  VE K  P+  W +R+F+T+     + LV    + ILC
Subjt:  QVKLWLYWKAAGQLQKERNENRALTRCVQELRMKGSCFNLCKEPQSGKRMKSSSVEIKWGPL-TWLSRNFITISLVCFAGLVFGASKFILC

AT5G56120.1 unknown protein

6.1e-67

55.23

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Query:  MAETKDSNAAHIVEIPVDQDHHQNHNQNLMIS----------VIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLF
        MA TKDS   H+VEIPVD++H +   Q  +++          VIQQHPL +ISES GHLLLLKLWQR+E LF  R+  +E++LES+K++IFQLCC+F +F
Subjt:  MAETKDSNAAHIVEIPVDQDHHQNHNQNLMIS----------VIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLF

Query:  HALSLTLLFTSSDPN---------ACRKWWAPAVAVAATSGVFVIVVQVKLWLYWKAAGQLQKERNENRALTRCVQELRMKGSCFNLCKEPQSGKRMKSS
        H    TL+++SS  +          C+KWW P+    ATS V V +VQ KL+++WK    + +ERN+NR LTRCV ELRMKGS F+L KEP SGKRMKSS
Subjt:  HALSLTLLFTSSDPN---------ACRKWWAPAVAVAATSGVFVIVVQVKLWLYWKAAGQLQKERNENRALTRCVQELRMKGSCFNLCKEPQSGKRMKSS

Query:  SVEIKWGPLTWLSRNFITISLVCFAGLVFGASKFILCGF
        SVEIKW P+TW S+  ITI L+C AGL F  SKFILCGF
Subjt:  SVEIKWGPLTWLSRNFITISLVCFAGLVFGASKFILCGF

Sequences

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CDS sequence

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ATGGCCGAAACCAAAGATTCCAATGCCGCCCACATCGTGGAAATCCCAGTAGACCAAGACCATCATCAAAATCACAACCAAAATCTTATGATCTCTGTGATCCAACAGCA
CCCACTGAGGCAAATTTCTGAAAGCTCCGGCCATCTACTGCTCCTGAAACTCTGGCAACGAGACGAGCATCTCTTCGGCCTCCGAATCGGCCGCCGAGAGACCAAATTGG
AGTCTCTGAAGCAACAGATCTTCCAACTCTGCTGCTACTTCTTCCTCTTCCACGCCCTCTCTCTCACCCTCCTCTTCACATCCTCCGATCCCAATGCCTGCCGAAAGTGG
TGGGCTCCGGCGGTGGCGGTGGCGGCGACGTCGGGGGTGTTCGTGATCGTGGTGCAGGTGAAGTTGTGGCTGTACTGGAAGGCAGCAGGGCAGTTGCAGAAGGAGAGGAA
TGAGAACAGAGCACTTACAAGATGTGTTCAAGAGCTGAGGATGAAAGGGTCTTGTTTTAATCTGTGTAAAGAGCCTCAGAGTGGGAAGAGGATGAAGAGCTCCAGTGTGG
AGATCAAATGGGGGCCTCTCACTTGGTTGTCAAGGAATTTTATTACCATTTCTCTTGTTTGCTTTGCAGGGCTTGTTTTTGGTGCTTCCAAGTTCATTCTTTGTGGGTTT
TGA

mRNA sequence

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Protein sequence

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MAETKDSNAAHIVEIPVDQDHHQNHNQNLMISVIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNACRKW
WAPAVAVAATSGVFVIVVQVKLWLYWKAAGQLQKERNENRALTRCVQELRMKGSCFNLCKEPQSGKRMKSSSVEIKWGPLTWLSRNFITISLVCFAGLVFGASKFILCGF

Spg005342 (gene) of Sponge gourd (cylindrica) v1 genome