; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg005347 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg005347
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold6:36399378..36404943
RNA-Seq ExpressionSpg005347
SyntenySpg005347
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ESR40694.1 hypothetical protein CICLE_v10027161mg, partial [Citrus clementina]1.6e-1735.81Show/hide
Query:  WVVPPEGWYKLNVDAAFNGKKWIVGVGLCMRNSGGEAMASAVRLHEFVRDSDFAEGWAMGDGLSFAAEMDFFPVMFETNSKRVCELMRGKREELSDLKCV
        W  PP  WYK+NVDAA +  +   G+G+ + NS GE MA+++    F RD +F E  A+ +GL    ++   P + E++S  V  L+  K     ++  +
Subjt:  WVVPPEGWYKLNVDAAFNGKKWIVGVGLCMRNSGGEAMASAVRLHEFVRDSDFAEGWAMGDGLSFAAEMDFFPVMFETNSKRVCELMRGKREELSDLKCV

Query:  VADALETWLSS-WPLQFVFSFREGNRLAHHLARLALRDQLDFVWFEEV
        ++D  E   SS    Q  F+ R  N +AHHL++LAL + ++ VW EEV
Subjt:  VADALETWLSS-WPLQFVFSFREGNRLAHHLARLALRDQLDFVWFEEV

TXG57364.1 hypothetical protein EZV62_018677 [Acer yangbiense]9.6e-1830.73Show/hide
Query:  NRVLFKGESPSGELPAWSVRLLDSYRRANAQSTIGVRGGAGRDAV---KWVVPPEGWYKLNVDAAFNGKKWIVGVGLCMRNSGGEAMASAVRLHEFVRDS
        NRVL+K    +  +  W+ + +D ++ AN + T    G   R+ +   KW  PP G +KLN DAA    +  VG G+ +R+  G  M S+++        
Subjt:  NRVLFKGESPSGELPAWSVRLLDSYRRANAQSTIGVRGGAGRDAV---KWVVPPEGWYKLNVDAAFNGKKWIVGVGLCMRNSGGEAMASAVRLHEFVRDS

Query:  DFAEGWAMGDGLSFAAEMDFFPVMFETNSKRVCELMRGKREELSDLKCVVADALETWLSSW-PLQFVFSFREGNRLAHHLARLALRDQLDFVWFEEVSSC
          AE  A+  G++FA E  F P++ E+++K V E++       ++   V+AD L    SS  P+   FS R  N +AH LA LA R    + W       
Subjt:  DFAEGWAMGDGLSFAAEMDFFPVMFETNSKRVCELMRGKREELSDLKCVVADALETWLSSW-PLQFVFSFREGNRLAHHLARLALRDQLDFVWFEEVSSC

Query:  AENIL
         E+++
Subjt:  AENIL

XP_006473914.2 uncharacterized protein LOC102629934 [Citrus sinensis]2.1e-1731.28Show/hide
Query:  WGLWLYSREKLERRWRNRVLFKGESPSGELP-AWSVRLLDSYRRANAQSTIGVRGGAGRDAVKWVVPPEGWYKLNVDAAFNGKKWIVGVGLCMRNSGGEA
        W +W           RN  +FK +     L  A +  L+ SY+R            +     KW  PPEGW+K+NVDAA   ++   G+G+ +RNS G+ 
Subjt:  WGLWLYSREKLERRWRNRVLFKGESPSGELP-AWSVRLLDSYRRANAQSTIGVRGGAGRDAVKWVVPPEGWYKLNVDAAFNGKKWIVGVGLCMRNSGGEA

Query:  MASAVRLHEFVRDSDFAEGWAMGDGLSFAAEMDFFPVMFETNSKRVCELMRGKREELSDLKCVVADALETWLSSWPLQFVFSFREGNRLAHHLARLALRD
        MA+A++  +F+   D AE  A   GL  A  +  FP++ E++SK V EL+  K+   +++  V+++  +       ++   + R  N LAH LA LAL +
Subjt:  MASAVRLHEFVRDSDFAEGWAMGDGLSFAAEMDFFPVMFETNSKRVCELMRGKREELSDLKCVVADALETWLSSWPLQFVFSFREGNRLAHHLARLALRD

Query:  QLDFV-WFEEV
          DFV W + +
Subjt:  QLDFV-WFEEV

XP_022140628.1 uncharacterized protein LOC111011237 [Momordica charantia]3.9e-1933.68Show/hide
Query:  ELPAWSVRLLDSYRRANAQSTIGVRGGAGRDAVKWVVPPEGWYKLNVDAAFNGKKWIVGVGLCMRNSGGEAMASAVRLHEFVRDSDFAEGWAMGDGLSFA
        +L  W+ + +  +R AN+    G         V W+ P +  YK+N DA+F       G+G+ +RN  G+ MASA +  E ++  D AE     +GL  A
Subjt:  ELPAWSVRLLDSYRRANAQSTIGVRGGAGRDAVKWVVPPEGWYKLNVDAAFNGKKWIVGVGLCMRNSGGEAMASAVRLHEFVRDSDFAEGWAMGDGLSFA

Query:  AEMDFFPVMFETNSKRVCELMRGKREELSDLKCVVADALETWLSSWPLQFVFSFREGNRLAHHLARLALRDQLDFVWFE----EVSSCAE
        +++   PV+ ET+S R+  L     E+LS+   +V  A   W  S    F F  REGN+ AH LAR AL  +   +W E    E+ SC E
Subjt:  AEMDFFPVMFETNSKRVCELMRGKREELSDLKCVVADALETWLSSWPLQFVFSFREGNRLAHHLARLALRDQLDFVWFE----EVSSCAE

XP_024046691.1 uncharacterized protein LOC112101027 [Citrus clementina]3.0e-1930.99Show/hide
Query:  WGLWLYSREKLERRWRNRVLFKGESPSGELP-AWSVRLLDSYRRANAQSTIGVRGGAGRDAVKWVVPPEGWYKLNVDAAFNGKKWIVGVGLCMRNSGGEA
        W +W           RN  LFK +    +L  A +  ++ SY R       G    +  +  +W  PPEGW+K+NVDAA   ++   G+G+ +RNS G+ 
Subjt:  WGLWLYSREKLERRWRNRVLFKGESPSGELP-AWSVRLLDSYRRANAQSTIGVRGGAGRDAVKWVVPPEGWYKLNVDAAFNGKKWIVGVGLCMRNSGGEA

Query:  MASAVRLHEFVRDSDFAEGWAMGDGLSFAAEMDFFPVMFETNSKRVCELMRGKREELSDLKCVVADALETWLSSWPLQFVFSFREGNRLAHHLARLALRD
        MA+A++  +F+   D+A+  A+  GL  A  +  FP++ E++S+ V +L+  K    +++  V ++  +       ++   + R  N LAH LARLAL +
Subjt:  MASAVRLHEFVRDSDFAEGWAMGDGLSFAAEMDFFPVMFETNSKRVCELMRGKREELSDLKCVVADALETWLSSWPLQFVFSFREGNRLAHHLARLALRD

Query:  QLDFV-WFEEVSS
        Q DFV W + + S
Subjt:  QLDFV-WFEEVSS

TrEMBL top hitse value%identityAlignment
A0A1S8ADA4 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (Fragment)6.7e-1729.19Show/hide
Query:  WGLWLYSREKLERRWRNRVLFKG--ESPSGELPAWSVRLLDSYRRANAQSTIGVRGGAGRDAVKWVVPPEGWYKLNVDAAFNGKKWIVGVGLCMRNSGGE
        W +W YS        RNR++F+G  E P   + A ++ +++SYRR    +     G +    ++W  PP+G YK+NVDAA N      G+G+ +RNS G+
Subjt:  WGLWLYSREKLERRWRNRVLFKG--ESPSGELPAWSVRLLDSYRRANAQSTIGVRGGAGRDAVKWVVPPEGWYKLNVDAAFNGKKWIVGVGLCMRNSGGE

Query:  AMASAVRLHEFVRDSDFAEGWAMGDGLSFAAEMDFFPVMFETNSKRVCELMRGKREELSDLKCVVADALETWLSSWPLQFVFSFREGNRLAHHLARLALR
         +A+AV+   +  D    E  A+  G+  A +   FP++ E++SK V +L   K+   ++++  +A+      +       +  R  N +AH +A++AL 
Subjt:  AMASAVRLHEFVRDSDFAEGWAMGDGLSFAAEMDFFPVMFETNSKRVCELMRGKREELSDLKCVVADALETWLSSWPLQFVFSFREGNRLAHHLARLALR

Query:  DQLDFVWFE
         +    W E
Subjt:  DQLDFVWFE

A0A5C7HKD5 Uncharacterized protein4.7e-1830.73Show/hide
Query:  NRVLFKGESPSGELPAWSVRLLDSYRRANAQSTIGVRGGAGRDAV---KWVVPPEGWYKLNVDAAFNGKKWIVGVGLCMRNSGGEAMASAVRLHEFVRDS
        NRVL+K    +  +  W+ + +D ++ AN + T    G   R+ +   KW  PP G +KLN DAA    +  VG G+ +R+  G  M S+++        
Subjt:  NRVLFKGESPSGELPAWSVRLLDSYRRANAQSTIGVRGGAGRDAV---KWVVPPEGWYKLNVDAAFNGKKWIVGVGLCMRNSGGEAMASAVRLHEFVRDS

Query:  DFAEGWAMGDGLSFAAEMDFFPVMFETNSKRVCELMRGKREELSDLKCVVADALETWLSSW-PLQFVFSFREGNRLAHHLARLALRDQLDFVWFEEVSSC
          AE  A+  G++FA E  F P++ E+++K V E++       ++   V+AD L    SS  P+   FS R  N +AH LA LA R    + W       
Subjt:  DFAEGWAMGDGLSFAAEMDFFPVMFETNSKRVCELMRGKREELSDLKCVVADALETWLSSW-PLQFVFSFREGNRLAHHLARLALRDQLDFVWFEEVSSC

Query:  AENIL
         E+++
Subjt:  AENIL

A0A6J1CIF1 uncharacterized protein LOC1110112371.9e-1933.68Show/hide
Query:  ELPAWSVRLLDSYRRANAQSTIGVRGGAGRDAVKWVVPPEGWYKLNVDAAFNGKKWIVGVGLCMRNSGGEAMASAVRLHEFVRDSDFAEGWAMGDGLSFA
        +L  W+ + +  +R AN+    G         V W+ P +  YK+N DA+F       G+G+ +RN  G+ MASA +  E ++  D AE     +GL  A
Subjt:  ELPAWSVRLLDSYRRANAQSTIGVRGGAGRDAVKWVVPPEGWYKLNVDAAFNGKKWIVGVGLCMRNSGGEAMASAVRLHEFVRDSDFAEGWAMGDGLSFA

Query:  AEMDFFPVMFETNSKRVCELMRGKREELSDLKCVVADALETWLSSWPLQFVFSFREGNRLAHHLARLALRDQLDFVWFE----EVSSCAE
        +++   PV+ ET+S R+  L     E+LS+   +V  A   W  S    F F  REGN+ AH LAR AL  +   +W E    E+ SC E
Subjt:  AEMDFFPVMFETNSKRVCELMRGKREELSDLKCVVADALETWLSSWPLQFVFSFREGNRLAHHLARLALRDQLDFVWFE----EVSSCAE

A0A7C9A7V4 Uncharacterized protein6.7e-1729.65Show/hide
Query:  WGLWLYSREKLERRWRNRVLFKGESPSGELPAWSVRLLDSYRR-ANAQSTIGVRGGAGR-DAVKWVVPPEGWYKLNVDAAFNGKKWIVGVGLCMRNSGGE
        WGLWL          RNR +F  +    ++    +R +DS+          G RGG  + + + W  P +G  K+NVDA+  G+  + GVG+ +R+  G+
Subjt:  WGLWLYSREKLERRWRNRVLFKGESPSGELPAWSVRLLDSYRR-ANAQSTIGVRGGAGR-DAVKWVVPPEGWYKLNVDAAFNGKKWIVGVGLCMRNSGGE

Query:  AMASAVRLHEFVRDSDFAEGWAMGDGLSFAAEMDFFPVMFETNSKRVCELMRGKREELSDLKCVVADALETWLSSWPLQFVFSFREGNRLAHHLARLALR
            A R      + +  E +A+  GL    +  F  +  ET+SK+V + + GK++ L+     + DAL        + F F  R  NR+AH LARLALR
Subjt:  AMASAVRLHEFVRDSDFAEGWAMGDGLSFAAEMDFFPVMFETNSKRVCELMRGKREELSDLKCVVADALETWLSSWPLQFVFSFREGNRLAHHLARLALR

Query:  DQLDFVWFEEVSSCAENILLLDSISL
         + + +W++   SC    +  D +S+
Subjt:  DQLDFVWFEEVSSCAENILLLDSISL

V4UMR3 RNase H domain-containing protein (Fragment)7.9e-1835.81Show/hide
Query:  WVVPPEGWYKLNVDAAFNGKKWIVGVGLCMRNSGGEAMASAVRLHEFVRDSDFAEGWAMGDGLSFAAEMDFFPVMFETNSKRVCELMRGKREELSDLKCV
        W  PP  WYK+NVDAA +  +   G+G+ + NS GE MA+++    F RD +F E  A+ +GL    ++   P + E++S  V  L+  K     ++  +
Subjt:  WVVPPEGWYKLNVDAAFNGKKWIVGVGLCMRNSGGEAMASAVRLHEFVRDSDFAEGWAMGDGLSFAAEMDFFPVMFETNSKRVCELMRGKREELSDLKCV

Query:  VADALETWLSS-WPLQFVFSFREGNRLAHHLARLALRDQLDFVWFEEV
        ++D  E   SS    Q  F+ R  N +AHHL++LAL + ++ VW EEV
Subjt:  VADALETWLSS-WPLQFVFSFREGNRLAHHLARLALRDQLDFVWFEEV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTGCAAATGTCTACCTATTTATCTTCTTTGCAAAACCTTTGGTATATAAACTCCATTGGGGAGGAGTGGGTTTCGAGTGGGGGCTGTGGCTCTACAGCAGAGAAAA
GTTGGAGCGACGCTGGCGAAATCGTGTGCTTTTTAAGGGAGAGAGTCCGTCAGGGGAATTACCTGCTTGGTCGGTTAGGCTACTTGATTCATATAGGCGTGCTAATGCTC
AATCGACGATTGGAGTGAGGGGCGGGGCTGGCAGAGATGCTGTGAAATGGGTTGTGCCGCCGGAAGGGTGGTACAAATTGAATGTAGACGCCGCCTTCAATGGTAAGAAA
TGGATTGTTGGGGTGGGTCTGTGCATGAGGAATAGCGGTGGGGAAGCGATGGCTTCAGCTGTGAGGTTGCATGAATTTGTAAGGGACTCGGATTTTGCAGAAGGTTGGGC
GATGGGCGATGGTTTGAGTTTCGCGGCTGAGATGGATTTTTTCCCTGTGATGTTTGAGACGAATTCTAAGCGGGTTTGTGAGTTAATGAGAGGCAAGAGGGAGGAGCTAT
CTGATCTGAAATGTGTAGTTGCTGATGCTTTGGAGACTTGGCTATCATCATGGCCGTTGCAATTTGTCTTCTCGTTCCGTGAAGGGAACCGTCTGGCTCATCATTTGGCT
AGATTAGCTTTGCGTGATCAACTTGATTTTGTGTGGTTTGAAGAAGTGTCTTCATGTGCAGAGAATATTTTACTTCTTGATTCTATTTCTCTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTTGCAAATGTCTACCTATTTATCTTCTTTGCAAAACCTTTGGTATATAAACTCCATTGGGGAGGAGTGGGTTTCGAGTGGGGGCTGTGGCTCTACAGCAGAGAAAA
GTTGGAGCGACGCTGGCGAAATCGTGTGCTTTTTAAGGGAGAGAGTCCGTCAGGGGAATTACCTGCTTGGTCGGTTAGGCTACTTGATTCATATAGGCGTGCTAATGCTC
AATCGACGATTGGAGTGAGGGGCGGGGCTGGCAGAGATGCTGTGAAATGGGTTGTGCCGCCGGAAGGGTGGTACAAATTGAATGTAGACGCCGCCTTCAATGGTAAGAAA
TGGATTGTTGGGGTGGGTCTGTGCATGAGGAATAGCGGTGGGGAAGCGATGGCTTCAGCTGTGAGGTTGCATGAATTTGTAAGGGACTCGGATTTTGCAGAAGGTTGGGC
GATGGGCGATGGTTTGAGTTTCGCGGCTGAGATGGATTTTTTCCCTGTGATGTTTGAGACGAATTCTAAGCGGGTTTGTGAGTTAATGAGAGGCAAGAGGGAGGAGCTAT
CTGATCTGAAATGTGTAGTTGCTGATGCTTTGGAGACTTGGCTATCATCATGGCCGTTGCAATTTGTCTTCTCGTTCCGTGAAGGGAACCGTCTGGCTCATCATTTGGCT
AGATTAGCTTTGCGTGATCAACTTGATTTTGTGTGGTTTGAAGAAGTGTCTTCATGTGCAGAGAATATTTTACTTCTTGATTCTATTTCTCTGTAA
Protein sequenceShow/hide protein sequence
MLANVYLFIFFAKPLVYKLHWGGVGFEWGLWLYSREKLERRWRNRVLFKGESPSGELPAWSVRLLDSYRRANAQSTIGVRGGAGRDAVKWVVPPEGWYKLNVDAAFNGKK
WIVGVGLCMRNSGGEAMASAVRLHEFVRDSDFAEGWAMGDGLSFAAEMDFFPVMFETNSKRVCELMRGKREELSDLKCVVADALETWLSSWPLQFVFSFREGNRLAHHLA
RLALRDQLDFVWFEEVSSCAENILLLDSISL