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Spg005351 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg005351
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionGag/pol protein
Genome locationscaffold6:36216259..36223565
RNA-Seq ExpressionSpg005351
SyntenySpg005351
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032042.1 gag/pol protein [Cucumis melo var. makuwa]2.0e-0544.93Show/hide
Query:  VVRQPDRHLGLAESSVVIPDDEMEDPLTFQQTMSDRCEVLDGWVPYFGNTMDAAY------FANEANDV
        VVRQPDR+LGL+E+ ++IPDD +EDPLTF+Q M+D     D W+      M++ Y        ++ NDV
Subjt:  VVRQPDRHLGLAESSVVIPDDEMEDPLTFQQTMSDRCEVLDGWVPYFGNTMDAAY------FANEANDV

KAA0054875.1 gag/pol protein [Cucumis melo var. makuwa]4.0e-0639.08Show/hide
Query:  VVRQPDRHLGLAESSVVIPDDEMEDPLTFQQTMSDRCEVLDGWVPYFGNTMDAAYFANEANDVILSNSIFDEEIVRSYLHSFAPKDC
        VVRQPDR+LGL+E+ +VIPDD +EDPLT++Q M+D     D W+      +++ Y  +   +  L N    E I       F  K C
Subjt:  VVRQPDRHLGLAESSVVIPDDEMEDPLTFQQTMSDRCEVLDGWVPYFGNTMDAAYFANEANDVILSNSIFDEEIVRSYLHSFAPKDC

KAA0065357.1 gag/pol protein [Cucumis melo var. makuwa]2.6e-0537.65Show/hide
Query:  VVRQPDRHLGLAESSVVIPDDEMEDPLTFQQTMSDRCEVLDGWVPYFGNTMDAAY------FANEANDVILSNSIFDEEIVRSYL
        VVRQPDR+LGL E+ ++IPDD +EDPLT++Q M+D     D W+      M++ Y        +++ND +   S++ + I+ S +
Subjt:  VVRQPDRHLGLAESSVVIPDDEMEDPLTFQQTMSDRCEVLDGWVPYFGNTMDAAY------FANEANDVILSNSIFDEEIVRSYL

XP_038888747.1 vicilin-like seed storage protein At2g18540 [Benincasa hispida]1.2e-0532.94Show/hide
Query:  VVRGKMVSFSSVDINRVYQIKTPLHPRGNDAMKNPSTKQMKEALKMVTNKGVQWKDSQTKVKTLVPSDLKPESAVWLHFIRNRSI
        +++G  V FS+ DIN +Y++K  L   GN  + +P    M++ L+++   G QW  S   +KTL  + L PE+ +W++ ++ R I
Subjt:  VVRGKMVSFSSVDINRVYQIKTPLHPRGNDAMKNPSTKQMKEALKMVTNKGVQWKDSQTKVKTLVPSDLKPESAVWLHFIRNRSI

XP_038904385.1 uncharacterized protein LOC120090747 [Benincasa hispida]8.1e-0735.29Show/hide
Query:  VVRGKMVSFSSVDINRVYQIKTPLHPRGNDAMKNPSTKQMKEALKMVTNKGVQWKDSQTKVKTLVPSDLKPESAVWLHFIRNRSI
        +++G +V FS+ DIN +Y++K      GN  + +P  ++M++AL+ +T  G QW  S   +KTL  S L PE+ +W++ ++ R I
Subjt:  VVRGKMVSFSSVDINRVYQIKTPLHPRGNDAMKNPSTKQMKEALKMVTNKGVQWKDSQTKVKTLVPSDLKPESAVWLHFIRNRSI

TrEMBL top hitse value%identityAlignment
A0A5A7SLY2 Gag/pol protein9.6e-0644.93Show/hide
Query:  VVRQPDRHLGLAESSVVIPDDEMEDPLTFQQTMSDRCEVLDGWVPYFGNTMDAAY------FANEANDV
        VVRQPDR+LGL+E+ ++IPDD +EDPLTF+Q M+D     D W+      M++ Y        ++ NDV
Subjt:  VVRQPDRHLGLAESSVVIPDDEMEDPLTFQQTMSDRCEVLDGWVPYFGNTMDAAY------FANEANDV

A0A5A7T8E8 Gag/pol protein1.6e-0544.93Show/hide
Query:  VVRQPDRHLGLAESSVVIPDDEMEDPLTFQQTMSDRCEVLDGWVPYFGNTMDAAY------FANEANDV
        VVRQPDR+LGL+E+ ++IPDD +EDPLTF+Q M+D     D W+      M++ Y        ++ NDV
Subjt:  VVRQPDRHLGLAESSVVIPDDEMEDPLTFQQTMSDRCEVLDGWVPYFGNTMDAAY------FANEANDV

A0A5A7TS93 Gag/pol protein1.3e-0549.09Show/hide
Query:  VVRQPDRHLGLAESSVVIPDDEMEDPLTFQQTMSDRCEVLDGWVPYFGNTMDAAY
        VVRQPDR+LGL+E+ ++IPDD++EDPLT++Q M+D     D W+      M++ Y
Subjt:  VVRQPDRHLGLAESSVVIPDDEMEDPLTFQQTMSDRCEVLDGWVPYFGNTMDAAY

A0A5A7UMM9 Gag/pol protein1.9e-0639.08Show/hide
Query:  VVRQPDRHLGLAESSVVIPDDEMEDPLTFQQTMSDRCEVLDGWVPYFGNTMDAAYFANEANDVILSNSIFDEEIVRSYLHSFAPKDC
        VVRQPDR+LGL+E+ +VIPDD +EDPLT++Q M+D     D W+      +++ Y  +   +  L N    E I       F  K C
Subjt:  VVRQPDRHLGLAESSVVIPDDEMEDPLTFQQTMSDRCEVLDGWVPYFGNTMDAAYFANEANDVILSNSIFDEEIVRSYLHSFAPKDC

A0A5A7VE43 Gag/pol protein1.3e-0537.65Show/hide
Query:  VVRQPDRHLGLAESSVVIPDDEMEDPLTFQQTMSDRCEVLDGWVPYFGNTMDAAY------FANEANDVILSNSIFDEEIVRSYL
        VVRQPDR+LGL E+ ++IPDD +EDPLT++Q M+D     D W+      M++ Y        +++ND +   S++ + I+ S +
Subjt:  VVRQPDRHLGLAESSVVIPDDEMEDPLTFQQTMSDRCEVLDGWVPYFGNTMDAAY------FANEANDVILSNSIFDEEIVRSYL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGTGGTGAGAGGTAAGATGGTCAGTTTTTCTTCTGTTGACATTAACAGGGTGTACCAGATCAAAACACCCCTACATCCAAGAGGGAATGATGCAATGAAGAACCC
CTCAACCAAACAAATGAAAGAAGCATTGAAGATGGTGACCAACAAGGGTGTTCAATGGAAGGACTCCCAGACAAAGGTGAAGACATTAGTGCCTAGCGATCTCAAGCCAG
AATCGGCAGTGTGGCTTCACTTTATCAGGAACAGGAGCATCATCAGAGAAGAGATCCTTTCATGTGGAAGGAAGAGAGCATGGAAGTTGTTCTTTGGGTCATTGGTCACC
CAACTATGTCAGAGGGGGAAGGTAGTTCCTGGGAAAGATGAGGAACGACACTTTTTCAAGCCAACCAATGGCCTACCTCTGATCGGGAAGCTTCAACAGAACAACGCCCA
AAGAAAGGACAAGGCTTCCACTTCCCAAGCTACTCCACCACCGGGGCTGACACCTGCTTCACCTCCTGAGCTTACTCCAGTCTCAAGGCCCACACCATCATCTGAGGCCC
TTGCATTCGTCTTTCGACAGGTAGACCGAGTTGAAGACAAGTTGAAGGCTTACTGGGTCTATGCTAAGGAGAGAGATGAAGCCATTAGAGAGTTCTATCTCTCTATCGCC
CCGAGCATCGCCCTTGTTGTTAGACAACCTGATCGTCATTTGGGTTTAGCTGAAAGTTCGGTTGTCATACCTGATGACGAAATGGAGGATCCATTGACATTCCAACAGAC
AATGAGTGACCGTTGCGAGGTCTTGGATGGTTGGGTACCTTATTTTGGTAACACTATGGATGCGGCCTACTTTGCAAATGAGGCAAACGACGTGATCCTGTCCAATTCTA
TCTTTGACGAAGAGATCGTCAGAAGCTATTTGCATTCATTTGCTCCGAAGGACTGTTGCGAAGGACTGTTGCGGTTTGTGGTCCCGGTCGTAAGTCGCCAGGGAACGCGC
AGTGAATCCGTTGGTCAGCATACCTTGCCTTCTTGCCAGAAGAGTAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAGTGGTGAGAGGTAAGATGGTCAGTTTTTCTTCTGTTGACATTAACAGGGTGTACCAGATCAAAACACCCCTACATCCAAGAGGGAATGATGCAATGAAGAACCC
CTCAACCAAACAAATGAAAGAAGCATTGAAGATGGTGACCAACAAGGGTGTTCAATGGAAGGACTCCCAGACAAAGGTGAAGACATTAGTGCCTAGCGATCTCAAGCCAG
AATCGGCAGTGTGGCTTCACTTTATCAGGAACAGGAGCATCATCAGAGAAGAGATCCTTTCATGTGGAAGGAAGAGAGCATGGAAGTTGTTCTTTGGGTCATTGGTCACC
CAACTATGTCAGAGGGGGAAGGTAGTTCCTGGGAAAGATGAGGAACGACACTTTTTCAAGCCAACCAATGGCCTACCTCTGATCGGGAAGCTTCAACAGAACAACGCCCA
AAGAAAGGACAAGGCTTCCACTTCCCAAGCTACTCCACCACCGGGGCTGACACCTGCTTCACCTCCTGAGCTTACTCCAGTCTCAAGGCCCACACCATCATCTGAGGCCC
TTGCATTCGTCTTTCGACAGGTAGACCGAGTTGAAGACAAGTTGAAGGCTTACTGGGTCTATGCTAAGGAGAGAGATGAAGCCATTAGAGAGTTCTATCTCTCTATCGCC
CCGAGCATCGCCCTTGTTGTTAGACAACCTGATCGTCATTTGGGTTTAGCTGAAAGTTCGGTTGTCATACCTGATGACGAAATGGAGGATCCATTGACATTCCAACAGAC
AATGAGTGACCGTTGCGAGGTCTTGGATGGTTGGGTACCTTATTTTGGTAACACTATGGATGCGGCCTACTTTGCAAATGAGGCAAACGACGTGATCCTGTCCAATTCTA
TCTTTGACGAAGAGATCGTCAGAAGCTATTTGCATTCATTTGCTCCGAAGGACTGTTGCGAAGGACTGTTGCGGTTTGTGGTCCCGGTCGTAAGTCGCCAGGGAACGCGC
AGTGAATCCGTTGGTCAGCATACCTTGCCTTCTTGCCAGAAGAGTAAGTGA
Protein sequenceShow/hide protein sequence
MAVVRGKMVSFSSVDINRVYQIKTPLHPRGNDAMKNPSTKQMKEALKMVTNKGVQWKDSQTKVKTLVPSDLKPESAVWLHFIRNRSIIREEILSCGRKRAWKLFFGSLVT
QLCQRGKVVPGKDEERHFFKPTNGLPLIGKLQQNNAQRKDKASTSQATPPPGLTPASPPELTPVSRPTPSSEALAFVFRQVDRVEDKLKAYWVYAKERDEAIREFYLSIA
PSIALVVRQPDRHLGLAESSVVIPDDEMEDPLTFQQTMSDRCEVLDGWVPYFGNTMDAAYFANEANDVILSNSIFDEEIVRSYLHSFAPKDCCEGLLRFVVPVVSRQGTR
SESVGQHTLPSCQKSK