; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg005359 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg005359
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein
Genome locationscaffold6:37041372..37043266
RNA-Seq ExpressionSpg005359
SyntenySpg005359
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033487.1 uncharacterized protein E6C27_scaffold261G00210 [Cucumis melo var. makuwa]5.5e-4842.56Show/hide
Query:  LLRTTSGLVGTEIIDMEEMVAMFLHIVAHDVKNQVIRRQFARSGETVSRYFNATLSVVLRLYDVLLKKPESITASWQDGRWKWF----------------
        +LRT  GL  T+ +D+EEMV +FLHIVAHDVKN+V RR FARSGETVSR+FN  L+VVLRL+++LLK+P+S+T S    +W+WF                
Subjt:  LLRTTSGLVGTEIIDMEEMVAMFLHIVAHDVKNQVIRRQFARSGETVSRYFNATLSVVLRLYDVLLKKPESITASWQDGRWKWF----------------

Query:  ----------------------------------ERMIKEKMSSCTIESTSIIDCKVRSLKRQYSAISEMLGLGCSGFGWNDEFKCIVDEKELYDAWVKS
                                          ++++KEK+    I+ T  ++  V+ LK+QY+ I+EM+G  CSGF WN E KCI  EK + + WVK 
Subjt:  ----------------------------------ERMIKEKMSSCTIESTSIIDCKVRSLKRQYSAISEMLGLGCSGFGWNDEFKCIVDEKELYDAWVKS

Query:  HSSAKGLLNKPFPHYEELAFVFGNDRASGDACNVPAEQADST
        H +A+ LLNKPFP++ +L  VFG DRA+G  C  P E    T
Subjt:  HSSAKGLLNKPFPHYEELAFVFGNDRASGDACNVPAEQADST

KAG6532280.1 hypothetical protein ZIOFF_006120 [Zingiber officinale]9.1e-4342.79Show/hide
Query:  MDRRCFVILCSLLRTTSGLVGTEIIDMEEMVAMFLHIVAHDVKNQVIRRQFARSGETVSRYFNATLSVVLRLYDVLLKKPESITASWQDGRWKWF-----
        MDRR F  LC LL     L G   + + E+V  FLHI+AH+VKN+V++ Q ARSGET+SR F+  L+ +LRL+++LLKKPE I     D RWKWF     
Subjt:  MDRRCFVILCSLLRTTSGLVGTEIIDMEEMVAMFLHIVAHDVKNQVIRRQFARSGETVSRYFNATLSVVLRLYDVLLKKPESITASWQDGRWKWF-----

Query:  ---------ERMIKEKMSSCTIESTSIIDCKVRSLKRQYSAISEMLGLGCSGFGWNDEFKCIVDEKELYDAWVKSHSSAKGLLNKPFPHYEELAFVFGND
                 E+++  K+ S ++++T  ID + + LKR++ AI++ML    SGFGWND  KCI+  K++++ WVK H +  GL NK FP++++L FV+G D
Subjt:  ---------ERMIKEKMSSCTIESTSIIDCKVRSLKRQYSAISEMLGLGCSGFGWNDEFKCIVDEKELYDAWVKSHSSAKGLLNKPFPHYEELAFVFGND

Query:  RASGDACNVPAEQAD
         A+G     P +  +
Subjt:  RASGDACNVPAEQAD

TYK05796.1 retrotransposon protein [Cucumis melo var. makuwa]1.7e-4947.39Show/hide
Query:  MDRRCFVILCSLLRTTSGLVGTEIIDMEEMVAMFLHIVAHDVKNQVIRRQFARSGETVSRYFNATLSVVLRLYDVLLKKPESITASWQDGRWKWFERM--
        MDRR F ILC LL+T SGL  TEI+D+EEMVAMFLH++AHD+KN VI+R+F RS ETVSR+FN  L  V+RLY+ L+K+P  +T + +D RW+ FE    
Subjt:  MDRRCFVILCSLLRTTSGLVGTEIIDMEEMVAMFLHIVAHDVKNQVIRRQFARSGETVSRYFNATLSVVLRLYDVLLKKPESITASWQDGRWKWFERM--

Query:  --------------------------------IKEKMSSCTIESTSIIDC------KVRSLKRQYSAISEMLGLGCSGFGWNDEFKCIVDEKELYDAWVK
                                        +K    +C  E      C       V        AI+EM G  CSGFGWNDE KCI+ EKEL+D WV+
Subjt:  --------------------------------IKEKMSSCTIESTSIIDC------KVRSLKRQYSAISEMLGLGCSGFGWNDEFKCIVDEKELYDAWVK

Query:  SHSSAKGLLNKPFPHYEELAFVFGNDRASG
        SH + KGLLNKPFP+Y+EL +VFG DRA+G
Subjt:  SHSSAKGLLNKPFPHYEELAFVFGNDRASG

TYK07921.1 hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa]7.2e-4842.42Show/hide
Query:  MDRRCFVILCSLLRTTSGLVGTEIIDMEEMVAMFLHIVAHDVKNQVIRRQFARSGETVSRYFNATLSVVLRLYDVLLKKPESITASWQ-DG---------
        MDRRCF ILC++LRT  GL  T+ +D++EMV +FLHIVAHDVKN+V RR  ARSGETVSR+FNA L+ VLRL+++LLK+P+ +T S   DG         
Subjt:  MDRRCFVILCSLLRTTSGLVGTEIIDMEEMVAMFLHIVAHDVKNQVIRRQFARSGETVSRYFNATLSVVLRLYDVLLKKPESITASWQ-DG---------

Query:  ----RWKWFE----------------RMIKE-----KMSS----------CTIESTSIIDCKVRSLK----------------RQYSAISEMLGLGCSGF
            R+++                  +M+K+     +M+S           TIE   +++C ++ ++                +QY+AI+EM+G  CSGF
Subjt:  ----RWKWFE----------------RMIKE-----KMSS----------CTIESTSIIDCKVRSLK----------------RQYSAISEMLGLGCSGF

Query:  GWNDEFKCIVDEKELYDAWVKSHSSAKGLLNKPFPHYEELAFVFGNDRASGDACNVPAEQADST
        GWN+  KCI  EK ++D WVK H +A+GLLNKPFP++ +L  VFG DRA+G  C  P E +  T
Subjt:  GWNDEFKCIVDEKELYDAWVKSHSSAKGLLNKPFPHYEELAFVFGNDRASGDACNVPAEQADST

TYK26842.1 uncharacterized protein E5676_scaffold260G00340 [Cucumis melo var. makuwa]5.5e-4842.56Show/hide
Query:  LLRTTSGLVGTEIIDMEEMVAMFLHIVAHDVKNQVIRRQFARSGETVSRYFNATLSVVLRLYDVLLKKPESITASWQDGRWKWF----------------
        +LRT  GL  T+ +D+EEMV +FLHIVAHDVKN+V RR FARSGETVSR+FN  L+VVLRL+++LLK+P+S+T S    +W+WF                
Subjt:  LLRTTSGLVGTEIIDMEEMVAMFLHIVAHDVKNQVIRRQFARSGETVSRYFNATLSVVLRLYDVLLKKPESITASWQDGRWKWF----------------

Query:  ----------------------------------ERMIKEKMSSCTIESTSIIDCKVRSLKRQYSAISEMLGLGCSGFGWNDEFKCIVDEKELYDAWVKS
                                          ++++KEK+    I+ T  ++  V+ LK+QY+ I+EM+G  CSGF WN E KCI  EK + + WVK 
Subjt:  ----------------------------------ERMIKEKMSSCTIESTSIIDCKVRSLKRQYSAISEMLGLGCSGFGWNDEFKCIVDEKELYDAWVKS

Query:  HSSAKGLLNKPFPHYEELAFVFGNDRASGDACNVPAEQADST
        H +A+ LLNKPFP++ +L  VFG DRA+G  C  P E    T
Subjt:  HSSAKGLLNKPFPHYEELAFVFGNDRASGDACNVPAEQADST

TrEMBL top hitse value%identityAlignment
A0A5A7SW62 Myb_DNA-bind_3 domain-containing protein2.7e-4842.56Show/hide
Query:  LLRTTSGLVGTEIIDMEEMVAMFLHIVAHDVKNQVIRRQFARSGETVSRYFNATLSVVLRLYDVLLKKPESITASWQDGRWKWF----------------
        +LRT  GL  T+ +D+EEMV +FLHIVAHDVKN+V RR FARSGETVSR+FN  L+VVLRL+++LLK+P+S+T S    +W+WF                
Subjt:  LLRTTSGLVGTEIIDMEEMVAMFLHIVAHDVKNQVIRRQFARSGETVSRYFNATLSVVLRLYDVLLKKPESITASWQDGRWKWF----------------

Query:  ----------------------------------ERMIKEKMSSCTIESTSIIDCKVRSLKRQYSAISEMLGLGCSGFGWNDEFKCIVDEKELYDAWVKS
                                          ++++KEK+    I+ T  ++  V+ LK+QY+ I+EM+G  CSGF WN E KCI  EK + + WVK 
Subjt:  ----------------------------------ERMIKEKMSSCTIESTSIIDCKVRSLKRQYSAISEMLGLGCSGFGWNDEFKCIVDEKELYDAWVKS

Query:  HSSAKGLLNKPFPHYEELAFVFGNDRASGDACNVPAEQADST
        H +A+ LLNKPFP++ +L  VFG DRA+G  C  P E    T
Subjt:  HSSAKGLLNKPFPHYEELAFVFGNDRASGDACNVPAEQADST

A0A5D3BZA2 Retrotransposon protein1.2e-4032.11Show/hide
Query:  MDRRCFVILCSLLRTTSGLVGTEIIDMEEMVAMFLHIVAHDVKNQVIRRQFARSGETVSRYFNATLSVVLRLYDVLLKKPESITASWQDGRWKWFER---
        MDR+ F IL  LLR  SGL  TEI+D+EEMVA FLH++AHDVKN++I+R+F RS ETVSRYFN  L  V+R+Y+  +++  S T +  D RWK FE    
Subjt:  MDRRCFVILCSLLRTTSGLVGTEIIDMEEMVAMFLHIVAHDVKNQVIRRQFARSGETVSRYFNATLSVVLRLYDVLLKKPESITASWQDGRWKWFER---

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -----------------------------------MIKEKMSSCTIESTSIIDCKVRSLKRQYSAISEMLGLGCSGFGWNDEFKCIVDEKELYDAWVKSH
                                           M+ EK+  C + +T++IDC+++ LK+ +  I+EM G  CSGFGWNDE KCI+ EKEL+D W++SH
Subjt:  -----------------------------------MIKEKMSSCTIESTSIIDCKVRSLKRQYSAISEMLGLGCSGFGWNDEFKCIVDEKELYDAWVKSH

Query:  SSAKGLLNKPFPHYEELAFVFGNDRAS
         +AKGLLNK F +Y+EL +VFG D+A+
Subjt:  SSAKGLLNKPFPHYEELAFVFGNDRAS

A0A5D3C620 Retrotransposon protein8.3e-5047.39Show/hide
Query:  MDRRCFVILCSLLRTTSGLVGTEIIDMEEMVAMFLHIVAHDVKNQVIRRQFARSGETVSRYFNATLSVVLRLYDVLLKKPESITASWQDGRWKWFERM--
        MDRR F ILC LL+T SGL  TEI+D+EEMVAMFLH++AHD+KN VI+R+F RS ETVSR+FN  L  V+RLY+ L+K+P  +T + +D RW+ FE    
Subjt:  MDRRCFVILCSLLRTTSGLVGTEIIDMEEMVAMFLHIVAHDVKNQVIRRQFARSGETVSRYFNATLSVVLRLYDVLLKKPESITASWQDGRWKWFERM--

Query:  --------------------------------IKEKMSSCTIESTSIIDC------KVRSLKRQYSAISEMLGLGCSGFGWNDEFKCIVDEKELYDAWVK
                                        +K    +C  E      C       V        AI+EM G  CSGFGWNDE KCI+ EKEL+D WV+
Subjt:  --------------------------------IKEKMSSCTIESTSIIDC------KVRSLKRQYSAISEMLGLGCSGFGWNDEFKCIVDEKELYDAWVK

Query:  SHSSAKGLLNKPFPHYEELAFVFGNDRASG
        SH + KGLLNKPFP+Y+EL +VFG DRA+G
Subjt:  SHSSAKGLLNKPFPHYEELAFVFGNDRASG

A0A5D3C7T4 Uncharacterized protein3.5e-4842.42Show/hide
Query:  MDRRCFVILCSLLRTTSGLVGTEIIDMEEMVAMFLHIVAHDVKNQVIRRQFARSGETVSRYFNATLSVVLRLYDVLLKKPESITASWQ-DG---------
        MDRRCF ILC++LRT  GL  T+ +D++EMV +FLHIVAHDVKN+V RR  ARSGETVSR+FNA L+ VLRL+++LLK+P+ +T S   DG         
Subjt:  MDRRCFVILCSLLRTTSGLVGTEIIDMEEMVAMFLHIVAHDVKNQVIRRQFARSGETVSRYFNATLSVVLRLYDVLLKKPESITASWQ-DG---------

Query:  ----RWKWFE----------------RMIKE-----KMSS----------CTIESTSIIDCKVRSLK----------------RQYSAISEMLGLGCSGF
            R+++                  +M+K+     +M+S           TIE   +++C ++ ++                +QY+AI+EM+G  CSGF
Subjt:  ----RWKWFE----------------RMIKE-----KMSS----------CTIESTSIIDCKVRSLK----------------RQYSAISEMLGLGCSGF

Query:  GWNDEFKCIVDEKELYDAWVKSHSSAKGLLNKPFPHYEELAFVFGNDRASGDACNVPAEQADST
        GWN+  KCI  EK ++D WVK H +A+GLLNKPFP++ +L  VFG DRA+G  C  P E +  T
Subjt:  GWNDEFKCIVDEKELYDAWVKSHSSAKGLLNKPFPHYEELAFVFGNDRASGDACNVPAEQADST

A0A5D3DTL0 Myb_DNA-bind_3 domain-containing protein2.7e-4842.56Show/hide
Query:  LLRTTSGLVGTEIIDMEEMVAMFLHIVAHDVKNQVIRRQFARSGETVSRYFNATLSVVLRLYDVLLKKPESITASWQDGRWKWF----------------
        +LRT  GL  T+ +D+EEMV +FLHIVAHDVKN+V RR FARSGETVSR+FN  L+VVLRL+++LLK+P+S+T S    +W+WF                
Subjt:  LLRTTSGLVGTEIIDMEEMVAMFLHIVAHDVKNQVIRRQFARSGETVSRYFNATLSVVLRLYDVLLKKPESITASWQDGRWKWF----------------

Query:  ----------------------------------ERMIKEKMSSCTIESTSIIDCKVRSLKRQYSAISEMLGLGCSGFGWNDEFKCIVDEKELYDAWVKS
                                          ++++KEK+    I+ T  ++  V+ LK+QY+ I+EM+G  CSGF WN E KCI  EK + + WVK 
Subjt:  ----------------------------------ERMIKEKMSSCTIESTSIIDCKVRSLKRQYSAISEMLGLGCSGFGWNDEFKCIVDEKELYDAWVKS

Query:  HSSAKGLLNKPFPHYEELAFVFGNDRASGDACNVPAEQADST
        H +A+ LLNKPFP++ +L  VFG DRA+G  C  P E    T
Subjt:  HSSAKGLLNKPFPHYEELAFVFGNDRASGDACNVPAEQADST

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G02210.1 unknown protein7.8e-0824.72Show/hide
Query:  IIDCKVRSLKRQYSAISEMLGLGCSGFGWNDEFKCIVDEKELYDAWVKSHSSAKGLLNKPFPHYEELAFVFGNDRASGDACNVPAEQAD
        ++  + +SL+RQ++AI  +  L   GF W++E + +  +  ++  ++K+H  A+  + +P P+Y++L  + G+     + C V  +  D
Subjt:  IIDCKVRSLKRQYSAISEMLGLGCSGFGWNDEFKCIVDEKELYDAWVKSHSSAKGLLNKPFPHYEELAFVFGNDRASGDACNVPAEQAD

AT4G02210.2 unknown protein7.8e-0824.72Show/hide
Query:  IIDCKVRSLKRQYSAISEMLGLGCSGFGWNDEFKCIVDEKELYDAWVKSHSSAKGLLNKPFPHYEELAFVFGNDRASGDACNVPAEQAD
        ++  + +SL+RQ++AI  +  L   GF W++E + +  +  ++  ++K+H  A+  + +P P+Y++L  + G+     + C V  +  D
Subjt:  IIDCKVRSLKRQYSAISEMLGLGCSGFGWNDEFKCIVDEKELYDAWVKSHSSAKGLLNKPFPHYEELAFVFGNDRASGDACNVPAEQAD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAGGAGATGTTTTGTCATTCTATGTAGTTTGTTGAGAACAACTTCCGGGTTGGTAGGAACGGAAATCATAGACATGGAAGAGATGGTCGCGATGTTCTTGCACAT
CGTTGCTCACGATGTTAAGAATCAAGTCATTAGAAGACAGTTTGCACGGTCAGGCGAAACCGTTTCTCGGTACTTCAACGCGACTTTGAGTGTCGTTCTACGATTGTATG
ACGTTCTACTTAAGAAACCAGAATCGATCACGGCTTCTTGGCAAGATGGGAGGTGGAAATGGTTCGAGCGGATGATAAAAGAGAAAATGTCGTCCTGCACCATAGAGTCA
ACGTCCATAATAGACTGCAAGGTGCGGTCCTTGAAACGACAATACAGTGCCATCTCGGAGATGCTAGGTCTGGGTTGCAGTGGATTCGGTTGGAATGACGAGTTTAAATG
CATCGTGGATGAGAAGGAACTCTACGATGCATGGGTGAAGTCACACTCCAGCGCAAAGGGACTGTTGAACAAGCCATTTCCTCACTACGAGGAACTTGCTTTCGTGTTCG
GCAATGACAGGGCGAGTGGCGACGCGTGCAATGTTCCAGCGGAACAGGCTGACAGCACCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATAGGAGATGTTTTGTCATTCTATGTAGTTTGTTGAGAACAACTTCCGGGTTGGTAGGAACGGAAATCATAGACATGGAAGAGATGGTCGCGATGTTCTTGCACAT
CGTTGCTCACGATGTTAAGAATCAAGTCATTAGAAGACAGTTTGCACGGTCAGGCGAAACCGTTTCTCGGTACTTCAACGCGACTTTGAGTGTCGTTCTACGATTGTATG
ACGTTCTACTTAAGAAACCAGAATCGATCACGGCTTCTTGGCAAGATGGGAGGTGGAAATGGTTCGAGCGGATGATAAAAGAGAAAATGTCGTCCTGCACCATAGAGTCA
ACGTCCATAATAGACTGCAAGGTGCGGTCCTTGAAACGACAATACAGTGCCATCTCGGAGATGCTAGGTCTGGGTTGCAGTGGATTCGGTTGGAATGACGAGTTTAAATG
CATCGTGGATGAGAAGGAACTCTACGATGCATGGGTGAAGTCACACTCCAGCGCAAAGGGACTGTTGAACAAGCCATTTCCTCACTACGAGGAACTTGCTTTCGTGTTCG
GCAATGACAGGGCGAGTGGCGACGCGTGCAATGTTCCAGCGGAACAGGCTGACAGCACCTAG
Protein sequenceShow/hide protein sequence
MDRRCFVILCSLLRTTSGLVGTEIIDMEEMVAMFLHIVAHDVKNQVIRRQFARSGETVSRYFNATLSVVLRLYDVLLKKPESITASWQDGRWKWFERMIKEKMSSCTIES
TSIIDCKVRSLKRQYSAISEMLGLGCSGFGWNDEFKCIVDEKELYDAWVKSHSSAKGLLNKPFPHYEELAFVFGNDRASGDACNVPAEQADST