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Spg005368 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg005368
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptiontransmembrane emp24 domain-containing protein p24beta2-like
Genome locationscaffold6:37187306..37187900
RNA-Seq ExpressionSpg005368
SyntenySpg005368
Gene Ontology termsGO:0046907 - intracellular transport (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0012505 - endomembrane system (cellular component)
GO:0016020 - membrane (cellular component)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
InterPro domainsIPR009038 - GOLD domain
IPR015720 - Transmembrane emp24 domain-containing protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6596756.1 Transmembrane emp24 domain-containing protein p24beta2, partial [Cucurbita argyrosperma subsp. sororia]1.3e-2460.91Show/hide
Query:  FILIVVFLVSQKAVFGIRFVIDKEECYSENVEFVRDTIHLSFVVVSVHTASWR-HAHKGVHLLVTNFYKFWELEVKGPLGEGIEEIRWRTSEKLKFVANT
        FI +    +S   V GIRFVIDKEEC+S NVEF+RDTI+LSFVVVSVHT  WR HAH GV LL           VKGPLGE IEEIR +TSEK +F++  
Subjt:  FILIVVFLVSQKAVFGIRFVIDKEECYSENVEFVRDTIHLSFVVVSVHTASWR-HAHKGVHLLVTNFYKFWELEVKGPLGEGIEEIRWRTSEKLKFVANT

Query:  KGQYRFCFTN
        KG+Y FCF N
Subjt:  KGQYRFCFTN

XP_022144018.1 transmembrane emp24 domain-containing protein p24beta2-like [Momordica charantia]1.2e-2864.75Show/hide
Query:  MRIGKF-----ILIVVFL--VSQKAVFGIRFVIDKEECYSENVEFVRDTIHLSFVVVSVHTASWRHAHKGVHLLVTNFYKFWELEVKGPLGEGIEEIRWR
        MRIGK      I +V  L  VS +AVFG RFVIDKEEC+S NVEF RDTIHLSFVVVSVH ASWRHAH GV           +L VKGP GEGIEE + +
Subjt:  MRIGKF-----ILIVVFL--VSQKAVFGIRFVIDKEECYSENVEFVRDTIHLSFVVVSVHTASWRHAHKGVHLLVTNFYKFWELEVKGPLGEGIEEIRWR

Query:  TSEKLKFVANTKGQYRFCFTNR
        TSEK KFVA+ KG YRFCFTN+
Subjt:  TSEKLKFVANTKGQYRFCFTNR

XP_022952151.1 transmembrane emp24 domain-containing protein p24beta2-like [Cucurbita moschata]8.7e-2460.75Show/hide
Query:  IVVFLVSQKAVFGIRFVIDKEECYSENVEFVRDTIHLSFVVVSVHTASWR-HAHKGVHLLVTNFYKFWELEVKGPLGEGIEEIRWRTSEKLKFVANTKGQ
        +    +S   V GIRFVIDKEEC+S NVEF+RDTI+LSFVVVSVHT  WR HAH GV LL           VKGPLGE IEEIR +TSEK +F++  KG+
Subjt:  IVVFLVSQKAVFGIRFVIDKEECYSENVEFVRDTIHLSFVVVSVHTASWR-HAHKGVHLLVTNFYKFWELEVKGPLGEGIEEIRWRTSEKLKFVANTKGQ

Query:  YRFCFTN
        Y FCF N
Subjt:  YRFCFTN

XP_023005965.1 transmembrane emp24 domain-containing protein p24beta2-like [Cucurbita maxima]5.6e-2359.81Show/hide
Query:  IVVFLVSQKAVFGIRFVIDKEECYSENVEFVRDTIHLSFVVVSVHTASWR-HAHKGVHLLVTNFYKFWELEVKGPLGEGIEEIRWRTSEKLKFVANTKGQ
        +    +S   V GIRFVIDKEEC+S NVEF+RDTI+LSFVVVSV+T  WR HAH GV LL           VKGPLGE IEEIR +TSEK +F++  KG+
Subjt:  IVVFLVSQKAVFGIRFVIDKEECYSENVEFVRDTIHLSFVVVSVHTASWR-HAHKGVHLLVTNFYKFWELEVKGPLGEGIEEIRWRTSEKLKFVANTKGQ

Query:  YRFCFTN
        Y FCF N
Subjt:  YRFCFTN

XP_023539502.1 transmembrane emp24 domain-containing protein p24beta2-like [Cucurbita pepo subsp. pepo]8.7e-2460.75Show/hide
Query:  IVVFLVSQKAVFGIRFVIDKEECYSENVEFVRDTIHLSFVVVSVHTASWR-HAHKGVHLLVTNFYKFWELEVKGPLGEGIEEIRWRTSEKLKFVANTKGQ
        +    +S   V GIRFVIDKEEC+S NVEF+RDTI+LSFVVVSVHT  WR HAH GV LL           VKGPLGE IEEIR +TSEK +F++  KG+
Subjt:  IVVFLVSQKAVFGIRFVIDKEECYSENVEFVRDTIHLSFVVVSVHTASWR-HAHKGVHLLVTNFYKFWELEVKGPLGEGIEEIRWRTSEKLKFVANTKGQ

Query:  YRFCFTN
        Y FCF N
Subjt:  YRFCFTN

TrEMBL top hitse value%identityAlignment
A0A6J1CS53 transmembrane emp24 domain-containing protein p24beta2-like5.7e-2964.75Show/hide
Query:  MRIGKF-----ILIVVFL--VSQKAVFGIRFVIDKEECYSENVEFVRDTIHLSFVVVSVHTASWRHAHKGVHLLVTNFYKFWELEVKGPLGEGIEEIRWR
        MRIGK      I +V  L  VS +AVFG RFVIDKEEC+S NVEF RDTIHLSFVVVSVH ASWRHAH GV           +L VKGP GEGIEE + +
Subjt:  MRIGKF-----ILIVVFL--VSQKAVFGIRFVIDKEECYSENVEFVRDTIHLSFVVVSVHTASWRHAHKGVHLLVTNFYKFWELEVKGPLGEGIEEIRWR

Query:  TSEKLKFVANTKGQYRFCFTNR
        TSEK KFVA+ KG YRFCFTN+
Subjt:  TSEKLKFVANTKGQYRFCFTNR

A0A6J1GJG3 transmembrane emp24 domain-containing protein p24beta2-like4.2e-2460.75Show/hide
Query:  IVVFLVSQKAVFGIRFVIDKEECYSENVEFVRDTIHLSFVVVSVHTASWR-HAHKGVHLLVTNFYKFWELEVKGPLGEGIEEIRWRTSEKLKFVANTKGQ
        +    +S   V GIRFVIDKEEC+S NVEF+RDTI+LSFVVVSVHT  WR HAH GV LL           VKGPLGE IEEIR +TSEK +F++  KG+
Subjt:  IVVFLVSQKAVFGIRFVIDKEECYSENVEFVRDTIHLSFVVVSVHTASWR-HAHKGVHLLVTNFYKFWELEVKGPLGEGIEEIRWRTSEKLKFVANTKGQ

Query:  YRFCFTN
        Y FCF N
Subjt:  YRFCFTN

A0A6J1KYW1 transmembrane emp24 domain-containing protein p24beta2-like2.7e-2359.81Show/hide
Query:  IVVFLVSQKAVFGIRFVIDKEECYSENVEFVRDTIHLSFVVVSVHTASWR-HAHKGVHLLVTNFYKFWELEVKGPLGEGIEEIRWRTSEKLKFVANTKGQ
        +    +S   V GIRFVIDKEEC+S NVEF+RDTI+LSFVVVSV+T  WR HAH GV LL           VKGPLGE IEEIR +TSEK +F++  KG+
Subjt:  IVVFLVSQKAVFGIRFVIDKEECYSENVEFVRDTIHLSFVVVSVHTASWR-HAHKGVHLLVTNFYKFWELEVKGPLGEGIEEIRWRTSEKLKFVANTKGQ

Query:  YRFCFTN
        Y FCF N
Subjt:  YRFCFTN

A0A6J5V7G0 GOLD domain-containing protein7.4e-2152.29Show/hide
Query:  ILIVVFLVSQKAVFGIRFVIDKEECYSENVEFVRDTIHLSFVVVSVHTASWRHAHKGVHLLVTNFYKFWELEVKGPLGEGIEEIRWRTSEKLKFVANTKG
        +L++ FLVS +AVFGIRFVID+EEC+S NV+F  DT+H+SFVV+ V  ASW +   GV           +L VKGP GE I + R +TSEK  FV   KG
Subjt:  ILIVVFLVSQKAVFGIRFVIDKEECYSENVEFVRDTIHLSFVVVSVHTASWRHAHKGVHLLVTNFYKFWELEVKGPLGEGIEEIRWRTSEKLKFVANTKG

Query:  QYRFCFTNR
         ++FCFTN+
Subjt:  QYRFCFTNR

A0A6J5XME6 GOLD domain-containing protein7.4e-2152.29Show/hide
Query:  ILIVVFLVSQKAVFGIRFVIDKEECYSENVEFVRDTIHLSFVVVSVHTASWRHAHKGVHLLVTNFYKFWELEVKGPLGEGIEEIRWRTSEKLKFVANTKG
        +L++ FLVS +AVFGIRFVID+EEC+S NV+F  DT+H+SFVV+ V  ASW +   GV           +L VKGP GE I + R +TSEK  FV   KG
Subjt:  ILIVVFLVSQKAVFGIRFVIDKEECYSENVEFVRDTIHLSFVVVSVHTASWRHAHKGVHLLVTNFYKFWELEVKGPLGEGIEEIRWRTSEKLKFVANTKG

Query:  QYRFCFTNR
         ++FCFTN+
Subjt:  QYRFCFTNR

SwissProt top hitse value%identityAlignment
Q9S7M9 Transmembrane emp24 domain-containing protein p24beta22.0e-1542.2Show/hide
Query:  ILIVVFLVSQKAVFGIRFVIDKEECYSENVEFVRDTIHLSFVVVSVHTASWRHAHKGVHLLVTNFYKFWELEVKGPLGEGIEEIRWRTSEKLKFVANTKG
        I+++  L S +A  GIRFVID+EEC+S   E+  DT+H+SFVV+    + W     GV           +L + GP GE I + R + S K  FV   KG
Subjt:  ILIVVFLVSQKAVFGIRFVIDKEECYSENVEFVRDTIHLSFVVVSVHTASWRHAHKGVHLLVTNFYKFWELEVKGPLGEGIEEIRWRTSEKLKFVANTKG

Query:  QYRFCFTNR
         YRFCFTN+
Subjt:  QYRFCFTNR

Arabidopsis top hitse value%identityAlignment
AT3G07680.1 emp24/gp25L/p24 family/GOLD family protein1.4e-1642.2Show/hide
Query:  ILIVVFLVSQKAVFGIRFVIDKEECYSENVEFVRDTIHLSFVVVSVHTASWRHAHKGVHLLVTNFYKFWELEVKGPLGEGIEEIRWRTSEKLKFVANTKG
        I+++  L S +A  GIRFVID+EEC+S   E+  DT+H+SFVV+    + W     GV           +L + GP GE I + R + S K  FV   KG
Subjt:  ILIVVFLVSQKAVFGIRFVIDKEECYSENVEFVRDTIHLSFVVVSVHTASWRHAHKGVHLLVTNFYKFWELEVKGPLGEGIEEIRWRTSEKLKFVANTKG

Query:  QYRFCFTNR
         YRFCFTN+
Subjt:  QYRFCFTNR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAATTGGAAAGTTTATTTTAATTGTGGTTTTTTTGGTTTCACAAAAGGCTGTGTTTGGGATTCGATTTGTGATCGACAAAGAAGAATGCTACTCTGAAAACGTTGA
ATTTGTTAGAGATACAATTCATCTCTCTTTTGTTGTTGTTAGTGTTCATACAGCTTCTTGGCGACATGCTCACAAAGGCGTTCATCTTTTAGTGACAAACTTTTACAAAT
TTTGGGAGTTAGAGGTGAAGGGGCCTTTAGGGGAGGGGATTGAAGAAATAAGATGGAGGACAAGTGAGAAGTTGAAGTTTGTAGCTAATACAAAAGGCCAATATCGCTTC
TGCTTCACCAACAGACCATTGAATTTGATATTCATATCAGCCGTTATTATGAATTCTAAGATCATCATCATCAACATTAACCCTATACTTTTACCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGAATTGGAAAGTTTATTTTAATTGTGGTTTTTTTGGTTTCACAAAAGGCTGTGTTTGGGATTCGATTTGTGATCGACAAAGAAGAATGCTACTCTGAAAACGTTGA
ATTTGTTAGAGATACAATTCATCTCTCTTTTGTTGTTGTTAGTGTTCATACAGCTTCTTGGCGACATGCTCACAAAGGCGTTCATCTTTTAGTGACAAACTTTTACAAAT
TTTGGGAGTTAGAGGTGAAGGGGCCTTTAGGGGAGGGGATTGAAGAAATAAGATGGAGGACAAGTGAGAAGTTGAAGTTTGTAGCTAATACAAAAGGCCAATATCGCTTC
TGCTTCACCAACAGACCATTGAATTTGATATTCATATCAGCCGTTATTATGAATTCTAAGATCATCATCATCAACATTAACCCTATACTTTTACCTTGA
Protein sequenceShow/hide protein sequence
MRIGKFILIVVFLVSQKAVFGIRFVIDKEECYSENVEFVRDTIHLSFVVVSVHTASWRHAHKGVHLLVTNFYKFWELEVKGPLGEGIEEIRWRTSEKLKFVANTKGQYRF
CFTNRPLNLIFISAVIMNSKIIIININPILLP