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Spg005369 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg005369
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionMADS-box transcription factor 50-like
Genome locationscaffold5:5461231..5461920
RNA-Seq ExpressionSpg005369
SyntenySpg005369
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0000978 - RNA polymerase II proximal promoter sequence-specific DNA binding (molecular function)
GO:0000981 - DNA-binding transcription factor activity, RNA polymerase II-specific (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6596626.1 Agamous-like MADS-box protein AGL80, partial [Cucurbita argyrosperma subsp. sororia]4.8e-4865.03Show/hide
Query:  VPSNSPLLQTGGNEMDLVDNGRNLMDQWFIDMVMNSSNDKIGGSSSSMAGELGFQSEANGGGLINGGGNLMMEIGNLGGRGTIAAEGDGEENNLLSDWNF
        V SN+PLL TG NEMDLVDNGRNLMDQWFIDMVMN SNDKIGGSSSSMAGELGFQSE       N GGN MME+ +LGGR TI AEGD +ENNLL DWNF
Subjt:  VPSNSPLLQTGGNEMDLVDNGRNLMDQWFIDMVMNSSNDKIGGSSSSMAGELGFQSEANGGGLINGGGNLMMEIGNLGGRGTIAAEGDGEENNLLSDWNF

Query:  GGTGSGMSEIEKLVNNINGGVDETASPMDLTNQRGDFGIGGDGGSGRDHMSLYSSKGGGGGIGGNDDAEMMLHGLLEVGAAMR
        GGTG GMSEIEKLV+N+ GGVD+ ASPMDL N + ++G+ GDGG                  G + +AEMMLHGL   G+  R
Subjt:  GGTGSGMSEIEKLVNNINGGVDETASPMDLTNQRGDFGIGGDGGSGRDHMSLYSSKGGGGGIGGNDDAEMMLHGLLEVGAAMR

KAG7028164.1 Agamous-like MADS-box protein AGL80, partial [Cucurbita argyrosperma subsp. argyrosperma]4.8e-4865.03Show/hide
Query:  VPSNSPLLQTGGNEMDLVDNGRNLMDQWFIDMVMNSSNDKIGGSSSSMAGELGFQSEANGGGLINGGGNLMMEIGNLGGRGTIAAEGDGEENNLLSDWNF
        V SN+PLL TG NEMDLVDNGRNLMDQWFIDMVMN SNDKIGGSSSSMAGELGFQSE       N GGN MME+ +LGGR TI AEGD +ENNLL DWNF
Subjt:  VPSNSPLLQTGGNEMDLVDNGRNLMDQWFIDMVMNSSNDKIGGSSSSMAGELGFQSEANGGGLINGGGNLMMEIGNLGGRGTIAAEGDGEENNLLSDWNF

Query:  GGTGSGMSEIEKLVNNINGGVDETASPMDLTNQRGDFGIGGDGGSGRDHMSLYSSKGGGGGIGGNDDAEMMLHGLLEVGAAMR
        GGTG GMSEIEKLV+N+ GGVD+ ASPMDL N + ++G+ GDGG                  G + +AEMMLHGL   G+  R
Subjt:  GGTGSGMSEIEKLVNNINGGVDETASPMDLTNQRGDFGIGGDGGSGRDHMSLYSSKGGGGGIGGNDDAEMMLHGLLEVGAAMR

XP_022936706.1 MADS-box transcription factor PHERES 1-like [Cucurbita moschata]6.9e-4764.48Show/hide
Query:  VPSNSPLLQTGGNEMDLVDNGRNLMDQWFIDMVMNSSNDKIGGSSSSMAGELGFQSEANGGGLINGGGNLMMEIGNLGGRGTIAAEGDGEENNLLSDWNF
        V SN+PLL  G NEMDLVDNGRNLMDQWFIDMVMN SNDKIGGSSSSMAGELGFQSE       N GGN MME  +LGGR TI AEGD +ENNLL DWNF
Subjt:  VPSNSPLLQTGGNEMDLVDNGRNLMDQWFIDMVMNSSNDKIGGSSSSMAGELGFQSEANGGGLINGGGNLMMEIGNLGGRGTIAAEGDGEENNLLSDWNF

Query:  GGTGSGMSEIEKLVNNINGGVDETASPMDLTNQRGDFGIGGDGGSGRDHMSLYSSKGGGGGIGGNDDAEMMLHGLLEVGAAMR
        GGTG GMSEIEKLV+N+ GGVD+ ASPMDL N + ++G+ GDGG                  G + +AEMMLHGL   G+  R
Subjt:  GGTGSGMSEIEKLVNNINGGVDETASPMDLTNQRGDFGIGGDGGSGRDHMSLYSSKGGGGGIGGNDDAEMMLHGLLEVGAAMR

XP_023005873.1 uncharacterized protein LOC111498747 [Cucurbita maxima]4.8e-4865.03Show/hide
Query:  VPSNSPLLQTGGNEMDLVDNGRNLMDQWFIDMVMNSSNDKIGGSSSSMAGELGFQSEANGGGLINGGGNLMMEIGNLGGRGTIAAEGDGEENNLLSDWNF
        V SN+PLL TG NEMDLVDNGRNLMDQWFIDMVMN SNDKIGGSSSSMAGELGFQSE       N GGN MME+ +LGGR TI AEGD +ENNLL DWNF
Subjt:  VPSNSPLLQTGGNEMDLVDNGRNLMDQWFIDMVMNSSNDKIGGSSSSMAGELGFQSEANGGGLINGGGNLMMEIGNLGGRGTIAAEGDGEENNLLSDWNF

Query:  GGTGSGMSEIEKLVNNINGGVDETASPMDLTNQRGDFGIGGDGGSGRDHMSLYSSKGGGGGIGGNDDAEMMLHGLLEVGAAMR
        GGTG GMSEIEKLV+N+ GGVD+ ASPMDL N + ++G+ GDGG                  G + +AEMMLHGL   G+  R
Subjt:  GGTGSGMSEIEKLVNNINGGVDETASPMDLTNQRGDFGIGGDGGSGRDHMSLYSSKGGGGGIGGNDDAEMMLHGLLEVGAAMR

XP_023539789.1 uncharacterized protein LOC111800368 [Cucurbita pepo subsp. pepo]2.8e-4865.57Show/hide
Query:  VPSNSPLLQTGGNEMDLVDNGRNLMDQWFIDMVMNSSNDKIGGSSSSMAGELGFQSEANGGGLINGGGNLMMEIGNLGGRGTIAAEGDGEENNLLSDWNF
        V SN+PLL TG NEMDLVDNGRNLMDQWFIDMVMN SNDKIGGSSSSMAGELGFQSE       N GGN MME+ +LGGR TI AEGD +ENNLL DWNF
Subjt:  VPSNSPLLQTGGNEMDLVDNGRNLMDQWFIDMVMNSSNDKIGGSSSSMAGELGFQSEANGGGLINGGGNLMMEIGNLGGRGTIAAEGDGEENNLLSDWNF

Query:  GGTGSGMSEIEKLVNNINGGVDETASPMDLTNQRGDFGIGGDGGSGRDHMSLYSSKGGGGGIGGNDDAEMMLHGLLEVGAAMR
        GGTG GMSEIEKLV+N+ GGVD+ ASPMDL N + ++GI GDGG                  G + +AEMMLHGL   G   R
Subjt:  GGTGSGMSEIEKLVNNINGGVDETASPMDLTNQRGDFGIGGDGGSGRDHMSLYSSKGGGGGIGGNDDAEMMLHGLLEVGAAMR

TrEMBL top hitse value%identityAlignment
A0A0A0LB39 MADS-box domain-containing protein5.5e-4262.84Show/hide
Query:  IVPSNSPLLQTGGNEMDLVDNGRNLMDQWFIDMVMNSSNDKIGGSSSSMAGELGF-QSEANGGGLI-NGGGNLMMEIGNLGGRGTIAAEGDGEENNLLSD
        +V SN  LL+T  NEMDLVDNGRNLMDQWFIDMVMN +NDK GGSSSSMAGELGF QSE NG  ++ NGGGN MME   +GG GTI  EGDGEENNLLS+
Subjt:  IVPSNSPLLQTGGNEMDLVDNGRNLMDQWFIDMVMNSSNDKIGGSSSSMAGELGF-QSEANGGGLI-NGGGNLMMEIGNLGGRGTIAAEGDGEENNLLSD

Query:  WNFGGTGS-GMSEIEKLVNNIN--GGVDETASPMDLTNQRGDFGIGGDGGSGRDHMSLYSSKGGGGGIGGNDDAEMMLHGLLE
        WNFGG    GMSEIEKLVN+I   G  +  AS MDL++ + DFGI  D   G    SL++      G+  NDD EMML GL E
Subjt:  WNFGGTGS-GMSEIEKLVNNIN--GGVDETASPMDLTNQRGDFGIGGDGGSGRDHMSLYSSKGGGGGIGGNDDAEMMLHGLLE

A0A1S3B6W2 uncharacterized protein LOC1034866915.7e-4763.68Show/hide
Query:  IVPSNSPLLQTGGNEMDLVDNGRNLMDQWFIDMVMNSSNDKIGGSSSSMAGELGF-QSEANGGGLINGGGNLMMEIGNLGGRGTIAAEGDGEENNLLSDW
        +V SNSPLL+T  NE+DL+DNGRNLMDQWFIDMVMN +NDKIGGSSSSMAGELGF Q+E NG  L+NGGG+ M+E+  +GG GTI  EGDGEENNLLS+W
Subjt:  IVPSNSPLLQTGGNEMDLVDNGRNLMDQWFIDMVMNSSNDKIGGSSSSMAGELGF-QSEANGGGLINGGGNLMMEIGNLGGRGTIAAEGDGEENNLLSDW

Query:  NFGGT-GSGMSEIEKLVNNI---NGGVDETASPMDLTNQRGDFGI-----GGDGGSGRDHMSLYSSKGGGGGIGGNDDAEMMLHGLLEVG
        NFGG   SGMSEIEKLVN+I    G V+  AS MDL++++GDFGI     GG  G      S+Y+      G+  NDDAEMMLHGL E G
Subjt:  NFGGT-GSGMSEIEKLVNNI---NGGVDETASPMDLTNQRGDFGI-----GGDGGSGRDHMSLYSSKGGGGGIGGNDDAEMMLHGLLEVG

A0A5A7TQH1 MADS-box transcription factor 50-like5.7e-4763.68Show/hide
Query:  IVPSNSPLLQTGGNEMDLVDNGRNLMDQWFIDMVMNSSNDKIGGSSSSMAGELGF-QSEANGGGLINGGGNLMMEIGNLGGRGTIAAEGDGEENNLLSDW
        +V SNSPLL+T  NE+DL+DNGRNLMDQWFIDMVMN +NDKIGGSSSSMAGELGF Q+E NG  L+NGGG+ M+E+  +GG GTI  EGDGEENNLLS+W
Subjt:  IVPSNSPLLQTGGNEMDLVDNGRNLMDQWFIDMVMNSSNDKIGGSSSSMAGELGF-QSEANGGGLINGGGNLMMEIGNLGGRGTIAAEGDGEENNLLSDW

Query:  NFGGT-GSGMSEIEKLVNNI---NGGVDETASPMDLTNQRGDFGI-----GGDGGSGRDHMSLYSSKGGGGGIGGNDDAEMMLHGLLEVG
        NFGG   SGMSEIEKLVN+I    G V+  AS MDL++++GDFGI     GG  G      S+Y+      G+  NDDAEMMLHGL E G
Subjt:  NFGGT-GSGMSEIEKLVNNI---NGGVDETASPMDLTNQRGDFGI-----GGDGGSGRDHMSLYSSKGGGGGIGGNDDAEMMLHGLLEVG

A0A6J1F887 MADS-box transcription factor PHERES 1-like3.3e-4764.48Show/hide
Query:  VPSNSPLLQTGGNEMDLVDNGRNLMDQWFIDMVMNSSNDKIGGSSSSMAGELGFQSEANGGGLINGGGNLMMEIGNLGGRGTIAAEGDGEENNLLSDWNF
        V SN+PLL  G NEMDLVDNGRNLMDQWFIDMVMN SNDKIGGSSSSMAGELGFQSE       N GGN MME  +LGGR TI AEGD +ENNLL DWNF
Subjt:  VPSNSPLLQTGGNEMDLVDNGRNLMDQWFIDMVMNSSNDKIGGSSSSMAGELGFQSEANGGGLINGGGNLMMEIGNLGGRGTIAAEGDGEENNLLSDWNF

Query:  GGTGSGMSEIEKLVNNINGGVDETASPMDLTNQRGDFGIGGDGGSGRDHMSLYSSKGGGGGIGGNDDAEMMLHGLLEVGAAMR
        GGTG GMSEIEKLV+N+ GGVD+ ASPMDL N + ++G+ GDGG                  G + +AEMMLHGL   G+  R
Subjt:  GGTGSGMSEIEKLVNNINGGVDETASPMDLTNQRGDFGIGGDGGSGRDHMSLYSSKGGGGGIGGNDDAEMMLHGLLEVGAAMR

A0A6J1L3D4 uncharacterized protein LOC1114987472.3e-4865.03Show/hide
Query:  VPSNSPLLQTGGNEMDLVDNGRNLMDQWFIDMVMNSSNDKIGGSSSSMAGELGFQSEANGGGLINGGGNLMMEIGNLGGRGTIAAEGDGEENNLLSDWNF
        V SN+PLL TG NEMDLVDNGRNLMDQWFIDMVMN SNDKIGGSSSSMAGELGFQSE       N GGN MME+ +LGGR TI AEGD +ENNLL DWNF
Subjt:  VPSNSPLLQTGGNEMDLVDNGRNLMDQWFIDMVMNSSNDKIGGSSSSMAGELGFQSEANGGGLINGGGNLMMEIGNLGGRGTIAAEGDGEENNLLSDWNF

Query:  GGTGSGMSEIEKLVNNINGGVDETASPMDLTNQRGDFGIGGDGGSGRDHMSLYSSKGGGGGIGGNDDAEMMLHGLLEVGAAMR
        GGTG GMSEIEKLV+N+ GGVD+ ASPMDL N + ++G+ GDGG                  G + +AEMMLHGL   G+  R
Subjt:  GGTGSGMSEIEKLVNNINGGVDETASPMDLTNQRGDFGIGGDGGSGRDHMSLYSSKGGGGGIGGNDDAEMMLHGLLEVGAAMR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGGAAACGGATCGACTATCATCAACAGGTTCATCGCCTTCCTCCTCCTCCTGGATTGTTCCTTCTAACTCTCCTCTGCTTCAAACAGGGGGTAATGAGATGGATCT
GGTCGATAATGGAAGGAATTTGATGGATCAGTGGTTTATTGATATGGTGATGAACTCATCAAACGATAAAATCGGAGGGAGTAGTAGCAGTATGGCCGGGGAGTTAGGGT
TTCAATCGGAAGCGAATGGAGGCGGTTTGATCAATGGAGGAGGAAATTTGATGATGGAGATCGGCAATTTGGGGGGAAGAGGAACGATTGCGGCTGAGGGAGATGGTGAG
GAGAATAATCTATTATCTGATTGGAATTTTGGGGGAACTGGCTCTGGAATGAGTGAGATCGAGAAGCTAGTGAACAACATCAATGGCGGTGTCGATGAAACTGCCAGTCC
TATGGATTTGACTAACCAGCGAGGGGATTTTGGAATCGGCGGCGACGGCGGCAGCGGCAGAGACCACATGAGTCTGTATTCCTCCAAAGGCGGCGGTGGAGGGATTGGTG
GGAATGATGATGCAGAGATGATGCTTCATGGATTGTTGGAAGTGGGAGCAGCAATGAGAATGAGAATGAAAATGAGAATGGGAAAGAAGATCATGAAGTTGAAGAAGAAG
TTGAAGATGAAGAAGAAGATGATCTTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCGGAAACGGATCGACTATCATCAACAGGTTCATCGCCTTCCTCCTCCTCCTGGATTGTTCCTTCTAACTCTCCTCTGCTTCAAACAGGGGGTAATGAGATGGATCT
GGTCGATAATGGAAGGAATTTGATGGATCAGTGGTTTATTGATATGGTGATGAACTCATCAAACGATAAAATCGGAGGGAGTAGTAGCAGTATGGCCGGGGAGTTAGGGT
TTCAATCGGAAGCGAATGGAGGCGGTTTGATCAATGGAGGAGGAAATTTGATGATGGAGATCGGCAATTTGGGGGGAAGAGGAACGATTGCGGCTGAGGGAGATGGTGAG
GAGAATAATCTATTATCTGATTGGAATTTTGGGGGAACTGGCTCTGGAATGAGTGAGATCGAGAAGCTAGTGAACAACATCAATGGCGGTGTCGATGAAACTGCCAGTCC
TATGGATTTGACTAACCAGCGAGGGGATTTTGGAATCGGCGGCGACGGCGGCAGCGGCAGAGACCACATGAGTCTGTATTCCTCCAAAGGCGGCGGTGGAGGGATTGGTG
GGAATGATGATGCAGAGATGATGCTTCATGGATTGTTGGAAGTGGGAGCAGCAATGAGAATGAGAATGAAAATGAGAATGGGAAAGAAGATCATGAAGTTGAAGAAGAAG
TTGAAGATGAAGAAGAAGATGATCTTCTGA
Protein sequenceShow/hide protein sequence
MPETDRLSSTGSSPSSSSWIVPSNSPLLQTGGNEMDLVDNGRNLMDQWFIDMVMNSSNDKIGGSSSSMAGELGFQSEANGGGLINGGGNLMMEIGNLGGRGTIAAEGDGE
ENNLLSDWNFGGTGSGMSEIEKLVNNINGGVDETASPMDLTNQRGDFGIGGDGGSGRDHMSLYSSKGGGGGIGGNDDAEMMLHGLLEVGAAMRMRMKMRMGKKIMKLKKK
LKMKKKMIF