CuGenDBv2

Gene ID	Spg005385
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	VIR_N domain-containing protein
Genome location	scaffold5:5455065..5457455
RNA-Seq Expression	Spg005385
Synteny	Spg005385
Gene Ontology terms	GO:0006396 - RNA processing (biological process) GO:0016071 - mRNA metabolic process (biological process) GO:0005654 - nucleoplasm (cellular component) GO:0003824 - catalytic activity (molecular function) GO:0097159 - organic cyclic compound binding (molecular function) GO:1901363 - heterocyclic compound binding (molecular function)
InterPro domains	IPR026736 - Protein virilizer

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022151432.1 uncharacterized protein LOC111019368 [Momordica charantia]

4.0e-73

73.36

Show/hide

Query:  SDCGRQALLALTYFP--------------EPRVRKQNSGALPLNLAISHSAAEIIEVIVTDSTASSLGSLDCGMPWSFTSFHILLLQGPNRK-MPYSMLE
        SDCGRQALLALTYFP              EP    +NSGALPLNLAISHSAAEI EVIVTDSTASSLGS        + + H     G NRK  P  +LE
Subjt:  SDCGRQALLALTYFP--------------EPRVRKQNSGALPLNLAISHSAAEIIEVIVTDSTASSLGSLDCGMPWSFTSFHILLLQGPNRK-MPYSMLE

Query:  WIDAGVVYHKSGGCWSSTNSAVLASGGDANSNLANTLVSELTDLDNAGETAGSDVNVMDIL-KTISEKSFDGISLRDSSIAQLTTAFQILAYISENSTVA
        WIDAGVVYHKSG       +AVLASGGDANSNLANTLVSELTDLDNAGE AGSDVNVMD L KTISEK+FDG++LRDSSIAQLTTAFQILAYISENSTVA
Subjt:  WIDAGVVYHKSGGCWSSTNSAVLASGGDANSNLANTLVSELTDLDNAGETAGSDVNVMDIL-KTISEKSFDGISLRDSSIAQLTTAFQILAYISENSTVA

Query:  AALYDEGAVAVIYAVLVDSRYMLERCSNN
        AALYDEGAVA+IYAVLVD R+MLER SNN
Subjt:  AALYDEGAVAVIYAVLVDSRYMLERCSNN

XP_022934378.1 uncharacterized protein LOC111441566 [Cucurbita moschata]

9.6e-75

74.78

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Query:  SDCGRQALLALTYFP--------------EPRVRKQNSGALPLNLAISHSAAEIIEVIVTDSTASSLGSLDCGMPWSFTSFHILLLQGPNRK-MPYSMLE
        SDCGRQALLALTYFP              EP    +NSGALPLNLAISHSAAEI EVIVTDSTASSL S        + + H     G NRK  P  +LE
Subjt:  SDCGRQALLALTYFP--------------EPRVRKQNSGALPLNLAISHSAAEIIEVIVTDSTASSLGSLDCGMPWSFTSFHILLLQGPNRK-MPYSMLE

Query:  WIDAGVVYHKSGGCWSSTNSAVLASGGDANSNLANTLVSELTDLDNAGETAGSDVNVMDIL-KTISEKSFDGISLRDSSIAQLTTAFQILAYISENSTVA
        WIDAGVVYHKSG       +AVLASGGDANSNLANTLVSELTDLDNAGE  GSDVNVMD L KTISEK+FDGI+LRDSSIAQLTTAFQILAYISENSTVA
Subjt:  WIDAGVVYHKSGGCWSSTNSAVLASGGDANSNLANTLVSELTDLDNAGETAGSDVNVMDIL-KTISEKSFDGISLRDSSIAQLTTAFQILAYISENSTVA

Query:  AALYDEGAVAVIYAVLVDSRYMLERCSNNY
        AALYDEGAVAVIYAVLVDSRYMLERCSNNY
Subjt:  AALYDEGAVAVIYAVLVDSRYMLERCSNNY

XP_022982800.1 uncharacterized protein LOC111481554 [Cucurbita maxima]

1.6e-74

73.91

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Query:  SDCGRQALLALTYFP--------------EPRVRKQNSGALPLNLAISHSAAEIIEVIVTDSTASSLGSLDCGMPWSFTSFHILLLQGPNRK-MPYSMLE
        SDCGRQALLALTYFP              EP    +NSGALPLNLAISHSAAEI EVIVTDSTASSL S        + + H     G NRK  P  +LE
Subjt:  SDCGRQALLALTYFP--------------EPRVRKQNSGALPLNLAISHSAAEIIEVIVTDSTASSLGSLDCGMPWSFTSFHILLLQGPNRK-MPYSMLE

Query:  WIDAGVVYHKSGGCWSSTNSAVLASGGDANSNLANTLVSELTDLDNAGETAGSDVNVMDIL-KTISEKSFDGISLRDSSIAQLTTAFQILAYISENSTVA
        W+DAGVVYHKSG       +AVLASGGDANSNLANTLVSELTDLDNAGE  GSDVNVMD L KTISEK+FDGI+LRDSSIAQLTTAFQILAYISENSTVA
Subjt:  WIDAGVVYHKSGGCWSSTNSAVLASGGDANSNLANTLVSELTDLDNAGETAGSDVNVMDIL-KTISEKSFDGISLRDSSIAQLTTAFQILAYISENSTVA

Query:  AALYDEGAVAVIYAVLVDSRYMLERCSNNY
        AALYDEGAVAVIYAVL+DSRYMLERCSNNY
Subjt:  AALYDEGAVAVIYAVLVDSRYMLERCSNNY

XP_023526248.1 uncharacterized protein LOC111789789 [Cucurbita pepo subsp. pepo]

9.6e-75

74.78

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Query:  SDCGRQALLALTYFP--------------EPRVRKQNSGALPLNLAISHSAAEIIEVIVTDSTASSLGSLDCGMPWSFTSFHILLLQGPNRK-MPYSMLE
        SDCGRQALLALTYFP              EP    +NSGALPLNLAISHSAAEI EVIVTDSTASSL S        + + H     G NRK  P  +LE
Subjt:  SDCGRQALLALTYFP--------------EPRVRKQNSGALPLNLAISHSAAEIIEVIVTDSTASSLGSLDCGMPWSFTSFHILLLQGPNRK-MPYSMLE

Query:  WIDAGVVYHKSGGCWSSTNSAVLASGGDANSNLANTLVSELTDLDNAGETAGSDVNVMDIL-KTISEKSFDGISLRDSSIAQLTTAFQILAYISENSTVA
        WIDAGVVYHKSG       +AVLASGGDANSNLANTLVSELTDLDNAGE  GSDVNVMD L KTISEK+FDGI+LRDSSIAQLTTAFQILAYISENSTVA
Subjt:  WIDAGVVYHKSGGCWSSTNSAVLASGGDANSNLANTLVSELTDLDNAGETAGSDVNVMDIL-KTISEKSFDGISLRDSSIAQLTTAFQILAYISENSTVA

Query:  AALYDEGAVAVIYAVLVDSRYMLERCSNNY
        AALYDEGAVAVIYAVLVDSRYMLERCSNNY
Subjt:  AALYDEGAVAVIYAVLVDSRYMLERCSNNY

XP_038905160.1 protein virilizer homolog [Benincasa hispida]

4.4e-72

73.48

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Query:  SDCGRQALLALTYFP--------------EPRVRKQNSGALPLNLAISHSAAEIIEVIVTDSTASSLGSLDCGMPWSFTSFHILLLQGPNRK-MPYSMLE
        S+CGRQALLALTYFP              EP    +NSGALPLNLAISH+AAEI EVIVTDSTASSLGS        + + H     G NRK  P  +LE
Subjt:  SDCGRQALLALTYFP--------------EPRVRKQNSGALPLNLAISHSAAEIIEVIVTDSTASSLGSLDCGMPWSFTSFHILLLQGPNRK-MPYSMLE

Query:  WIDAGVVYHKSGGCWSSTNSAVLASGGDANSNLANTLVSELTDLDNAGETAGSDVNVMDIL-KTISEKSFDGISLRDSSIAQLTTAFQILAYISENSTVA
        WIDAGVVYHKSG       +AVLASGGDANSNLANTLVSELTDLDNAGE    DVNVMD L KTISEK+FDGI+LRDSSIAQLTTAFQILAYISENSTVA
Subjt:  WIDAGVVYHKSGGCWSSTNSAVLASGGDANSNLANTLVSELTDLDNAGETAGSDVNVMDIL-KTISEKSFDGISLRDSSIAQLTTAFQILAYISENSTVA

Query:  AALYDEGAVAVIYAVLVDSRYMLERCSNNY
        AALYDEGAVAVIYAVLVDSRYMLERCSNNY
Subjt:  AALYDEGAVAVIYAVLVDSRYMLERCSNNY

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LET0 Uncharacterized protein

3.4e-70

71.74

Show/hide

Query:  SDCGRQALLALTYFP--------------EPRVRKQNSGALPLNLAISHSAAEIIEVIVTDSTASSLGSLDCGMPWSFTSFHILLLQGPNRK-MPYSMLE
        S+CGRQALLALTYFP              EP    +NSGALPLNLAISH+AAEI EVIVTDSTASSLGS        + + H     G NRK  P  +LE
Subjt:  SDCGRQALLALTYFP--------------EPRVRKQNSGALPLNLAISHSAAEIIEVIVTDSTASSLGSLDCGMPWSFTSFHILLLQGPNRK-MPYSMLE

Query:  WIDAGVVYHKSGGCWSSTNSAVLASGGDANSNLANTLVSELTDLDNAGETAGSDVNVMDIL-KTISEKSFDGISLRDSSIAQLTTAFQILAYISENSTVA
        WIDAGVV+HKSG       +AVLASGGDANSNLANTLVSELTDLDN   TA  DVNVMD L KTISEK+FDGI+LRD SIAQLTTAFQILAYISENSTVA
Subjt:  WIDAGVVYHKSGGCWSSTNSAVLASGGDANSNLANTLVSELTDLDNAGETAGSDVNVMDIL-KTISEKSFDGISLRDSSIAQLTTAFQILAYISENSTVA

Query:  AALYDEGAVAVIYAVLVDSRYMLERCSNNY
        AALYDEGAVAVIYAVLVDSRYM+ERCSNNY
Subjt:  AALYDEGAVAVIYAVLVDSRYMLERCSNNY

A0A5A7TPS1 Putative Embryo defective 2016

5.9e-70

71.74

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Query:  SDCGRQALLALTYFP--------------EPRVRKQNSGALPLNLAISHSAAEIIEVIVTDSTASSLGSLDCGMPWSFTSFHILLLQGPNRK-MPYSMLE
        S+CGRQALLAL YFP              EP    +NSGALPLNLAISH+AAEI EVIVTDSTASSLGS        + + H     G NRK  P  +LE
Subjt:  SDCGRQALLALTYFP--------------EPRVRKQNSGALPLNLAISHSAAEIIEVIVTDSTASSLGSLDCGMPWSFTSFHILLLQGPNRK-MPYSMLE

Query:  WIDAGVVYHKSGGCWSSTNSAVLASGGDANSNLANTLVSELTDLDNAGETAGSDVNVMDIL-KTISEKSFDGISLRDSSIAQLTTAFQILAYISENSTVA
        WIDAGVV+HKSG       +AVLASGGDANSNLANTLVSELTDLDN   TA  DVNVMD L KTISEK+FDGISLRD SIAQLTTAFQILAYISENSTVA
Subjt:  WIDAGVVYHKSGGCWSSTNSAVLASGGDANSNLANTLVSELTDLDNAGETAGSDVNVMDIL-KTISEKSFDGISLRDSSIAQLTTAFQILAYISENSTVA

Query:  AALYDEGAVAVIYAVLVDSRYMLERCSNNY
        AALYDEGAVAVIYAVLVDSRYM+ERCSNNY
Subjt:  AALYDEGAVAVIYAVLVDSRYMLERCSNNY

A0A6J1DDH5 uncharacterized protein LOC111019368

1.9e-73

73.36

Show/hide

Query:  SDCGRQALLALTYFP--------------EPRVRKQNSGALPLNLAISHSAAEIIEVIVTDSTASSLGSLDCGMPWSFTSFHILLLQGPNRK-MPYSMLE
        SDCGRQALLALTYFP              EP    +NSGALPLNLAISHSAAEI EVIVTDSTASSLGS        + + H     G NRK  P  +LE
Subjt:  SDCGRQALLALTYFP--------------EPRVRKQNSGALPLNLAISHSAAEIIEVIVTDSTASSLGSLDCGMPWSFTSFHILLLQGPNRK-MPYSMLE

Query:  WIDAGVVYHKSGGCWSSTNSAVLASGGDANSNLANTLVSELTDLDNAGETAGSDVNVMDIL-KTISEKSFDGISLRDSSIAQLTTAFQILAYISENSTVA
        WIDAGVVYHKSG       +AVLASGGDANSNLANTLVSELTDLDNAGE AGSDVNVMD L KTISEK+FDG++LRDSSIAQLTTAFQILAYISENSTVA
Subjt:  WIDAGVVYHKSGGCWSSTNSAVLASGGDANSNLANTLVSELTDLDNAGETAGSDVNVMDIL-KTISEKSFDGISLRDSSIAQLTTAFQILAYISENSTVA

Query:  AALYDEGAVAVIYAVLVDSRYMLERCSNN
        AALYDEGAVA+IYAVLVD R+MLER SNN
Subjt:  AALYDEGAVAVIYAVLVDSRYMLERCSNN

A0A6J1F7H7 uncharacterized protein LOC111441566

4.6e-75

74.78

Show/hide

Query:  SDCGRQALLALTYFP--------------EPRVRKQNSGALPLNLAISHSAAEIIEVIVTDSTASSLGSLDCGMPWSFTSFHILLLQGPNRK-MPYSMLE
        SDCGRQALLALTYFP              EP    +NSGALPLNLAISHSAAEI EVIVTDSTASSL S        + + H     G NRK  P  +LE
Subjt:  SDCGRQALLALTYFP--------------EPRVRKQNSGALPLNLAISHSAAEIIEVIVTDSTASSLGSLDCGMPWSFTSFHILLLQGPNRK-MPYSMLE

Query:  WIDAGVVYHKSGGCWSSTNSAVLASGGDANSNLANTLVSELTDLDNAGETAGSDVNVMDIL-KTISEKSFDGISLRDSSIAQLTTAFQILAYISENSTVA
        WIDAGVVYHKSG       +AVLASGGDANSNLANTLVSELTDLDNAGE  GSDVNVMD L KTISEK+FDGI+LRDSSIAQLTTAFQILAYISENSTVA
Subjt:  WIDAGVVYHKSGGCWSSTNSAVLASGGDANSNLANTLVSELTDLDNAGETAGSDVNVMDIL-KTISEKSFDGISLRDSSIAQLTTAFQILAYISENSTVA

Query:  AALYDEGAVAVIYAVLVDSRYMLERCSNNY
        AALYDEGAVAVIYAVLVDSRYMLERCSNNY
Subjt:  AALYDEGAVAVIYAVLVDSRYMLERCSNNY

A0A6J1J3V3 uncharacterized protein LOC111481554

7.9e-75

73.91

Show/hide

Query:  SDCGRQALLALTYFP--------------EPRVRKQNSGALPLNLAISHSAAEIIEVIVTDSTASSLGSLDCGMPWSFTSFHILLLQGPNRK-MPYSMLE
        SDCGRQALLALTYFP              EP    +NSGALPLNLAISHSAAEI EVIVTDSTASSL S        + + H     G NRK  P  +LE
Subjt:  SDCGRQALLALTYFP--------------EPRVRKQNSGALPLNLAISHSAAEIIEVIVTDSTASSLGSLDCGMPWSFTSFHILLLQGPNRK-MPYSMLE

Query:  WIDAGVVYHKSGGCWSSTNSAVLASGGDANSNLANTLVSELTDLDNAGETAGSDVNVMDIL-KTISEKSFDGISLRDSSIAQLTTAFQILAYISENSTVA
        W+DAGVVYHKSG       +AVLASGGDANSNLANTLVSELTDLDNAGE  GSDVNVMD L KTISEK+FDGI+LRDSSIAQLTTAFQILAYISENSTVA
Subjt:  WIDAGVVYHKSGGCWSSTNSAVLASGGDANSNLANTLVSELTDLDNAGETAGSDVNVMDIL-KTISEKSFDGISLRDSSIAQLTTAFQILAYISENSTVA

Query:  AALYDEGAVAVIYAVLVDSRYMLERCSNNY
        AALYDEGAVAVIYAVL+DSRYMLERCSNNY
Subjt:  AALYDEGAVAVIYAVLVDSRYMLERCSNNY

SwissProt top hits

e value

%identity

Alignment

F4J8G7 Protein virilizer homolog

1.2e-48

54.27

Show/hide

Query:  SDCGRQALLALTYFP----------------EPRVRKQNSGALPLNLAISHSAAEIIEVIVTDSTASSLGSLDCGMPWSFTSFHILLLQGPNRK-MPYSM
        SDCGR+ALL L  FP                EP V  +NSG  PLNLAI HSAAEI EVIV+DSTAS L +     P    + H L   G NRK  P  +
Subjt:  SDCGRQALLALTYFP----------------EPRVRKQNSGALPLNLAISHSAAEIIEVIVTDSTASSLGSLDCGMPWSFTSFHILLLQGPNRK-MPYSM

Query:  LEWIDAGVVYHKSGGCWSSTNSAVLASGGDANSNLANTLVSELTDLDN-AGETAG-SDVNVMDIL-KTISEKSFDGISLRDSSIAQLTTAFQILAYISEN
        L+WIDAGVVYHK G       +AVLASGGDA  + ++ L  +LT  +N AGE+   S++NV+D L K I EKSF+G++L DSSI+QLTTA +ILA IS+N
Subjt:  LEWIDAGVVYHKSGGCWSSTNSAVLASGGDANSNLANTLVSELTDLDN-AGETAG-SDVNVMDIL-KTISEKSFDGISLRDSSIAQLTTAFQILAYISEN

Query:  STVAAALYDEGAVAVIYAVLVDSRYMLERCSNNY
        STVAAALYDEGAV V+YA+LV+  +M ER SN Y
Subjt:  STVAAALYDEGAVAVIYAVLVDSRYMLERCSNNY

Arabidopsis top hits

e value

%identity

Alignment

AT3G05680.1 embryo defective 2016

8.7e-50

54.27

Show/hide

Query:  SDCGRQALLALTYFP----------------EPRVRKQNSGALPLNLAISHSAAEIIEVIVTDSTASSLGSLDCGMPWSFTSFHILLLQGPNRK-MPYSM
        SDCGR+ALL L  FP                EP V  +NSG  PLNLAI HSAAEI EVIV+DSTAS L +     P    + H L   G NRK  P  +
Subjt:  SDCGRQALLALTYFP----------------EPRVRKQNSGALPLNLAISHSAAEIIEVIVTDSTASSLGSLDCGMPWSFTSFHILLLQGPNRK-MPYSM

Query:  LEWIDAGVVYHKSGGCWSSTNSAVLASGGDANSNLANTLVSELTDLDN-AGETAG-SDVNVMDIL-KTISEKSFDGISLRDSSIAQLTTAFQILAYISEN
        L+WIDAGVVYHK G       +AVLASGGDA  + ++ L  +LT  +N AGE+   S++NV+D L K I EKSF+G++L DSSI+QLTTA +ILA IS+N
Subjt:  LEWIDAGVVYHKSGGCWSSTNSAVLASGGDANSNLANTLVSELTDLDN-AGETAG-SDVNVMDIL-KTISEKSFDGISLRDSSIAQLTTAFQILAYISEN

Query:  STVAAALYDEGAVAVIYAVLVDSRYMLERCSNNY
        STVAAALYDEGAV V+YA+LV+  +M ER SN Y
Subjt:  STVAAALYDEGAVAVIYAVLVDSRYMLERCSNNY

AT3G05680.2 embryo defective 2016

8.7e-50

54.27

Show/hide

Query:  SDCGRQALLALTYFP----------------EPRVRKQNSGALPLNLAISHSAAEIIEVIVTDSTASSLGSLDCGMPWSFTSFHILLLQGPNRK-MPYSM
        SDCGR+ALL L  FP                EP V  +NSG  PLNLAI HSAAEI EVIV+DSTAS L +     P    + H L   G NRK  P  +
Subjt:  SDCGRQALLALTYFP----------------EPRVRKQNSGALPLNLAISHSAAEIIEVIVTDSTASSLGSLDCGMPWSFTSFHILLLQGPNRK-MPYSM

Query:  LEWIDAGVVYHKSGGCWSSTNSAVLASGGDANSNLANTLVSELTDLDN-AGETAG-SDVNVMDIL-KTISEKSFDGISLRDSSIAQLTTAFQILAYISEN
        L+WIDAGVVYHK G       +AVLASGGDA  + ++ L  +LT  +N AGE+   S++NV+D L K I EKSF+G++L DSSI+QLTTA +ILA IS+N
Subjt:  LEWIDAGVVYHKSGGCWSSTNSAVLASGGDANSNLANTLVSELTDLDN-AGETAG-SDVNVMDIL-KTISEKSFDGISLRDSSIAQLTTAFQILAYISEN

Query:  STVAAALYDEGAVAVIYAVLVDSRYMLERCSNNY
        STVAAALYDEGAV V+YA+LV+  +M ER SN Y
Subjt:  STVAAALYDEGAVAVIYAVLVDSRYMLERCSNNY

Sequences

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CDS sequence

Show/hide CDS sequence

tctgactgtggtcgccaggccttgcttgctctgacatacttccctgagcccagagtcaggaagcagaatagtggtgctttgcctctgaatcttgcgatatctcactctgc
tgctgagatcattgaagtcattgtaaccgactccactgcatcatctcttggttctctggattgtggcatgccatggagctttacaagctttcacattcttctcctccagg
gtccaaatagaaagatgccctactcgatgttggaatggatagatgctggtgttgtttaccataagagtgggggctgttggtcttctacgaattctgcagtattagcatct
ggaggagatgctaactcaaatttagctaatactttagtgtctgagttgacagatttagacaatgctggagaaactgctggttctgatgttaatgttatggacatcttgaa
aaccatttctgagaagagttttgatggtattagtcttcgtgactcttctatagcacaattgacaactgcattccagattttggcatatatttcagagaactcgactgttg
ctgctgctctatatgatgaaggtgcagtagctgttatctatgcagtactagttgattctcgatatatgctggagaggtgctcaaacaattatggttag

mRNA sequence

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Protein sequence

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SDCGRQALLALTYFPEPRVRKQNSGALPLNLAISHSAAEIIEVIVTDSTASSLGSLDCGMPWSFTSFHILLLQGPNRKMPYSMLEWIDAGVVYHKSGGCWSSTNSAVLAS
GGDANSNLANTLVSELTDLDNAGETAGSDVNVMDILKTISEKSFDGISLRDSSIAQLTTAFQILAYISENSTVAAALYDEGAVAVIYAVLVDSRYMLERCSNNYG

Spg005385 (gene) of Sponge gourd (cylindrica) v1 genome