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Spg005397 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg005397
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold6:34804839..34807132
RNA-Seq ExpressionSpg005397
SyntenySpg005397
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0053276.1 uncharacterized protein E6C27_scaffold102G00750 [Cucumis melo var. makuwa]1.4e-2350.87Show/hide
Query:  YQPIISLISHPFPLKLSEHFKERVKEEEEEEFRGLRLKKIGKSSCKASHCRICVQPVNLWCFSRFELHRRIQEGIESGNLESRMLRGNRSSLQTRELDKT
        +Q    L  H F  KLSE+FKERVK EEEEEFRGLRLKK+ K   ++   +     +NLW    F L   I      G +     RGNR SLQT +LDKT
Subjt:  YQPIISLISHPFPLKLSEHFKERVKEEEEEEFRGLRLKKIGKSSCKASHCRICVQPVNLWCFSRFELHRRIQEGIESGNLESRMLRGNRSSLQTRELDKT

Query:  PEAIWYRVHTGYILLSTLSVLRDNDAV-----------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI
                      LSTLSVLRDNDAV           VEIELP+PDTLPT AES  S+SSTWLELY ESVH+
Subjt:  PEAIWYRVHTGYILLSTLSVLRDNDAV-----------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]8.1e-1962.86Show/hide
Query:  SRFELHRRIQE---GIESGNLE--SRMLRGNRSSLQTRELDKTPEAIWYRVHTGYILLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYI
        S  E+H+  Q+    IESG       MLRGNRSSLQ+ ELD T              LSTLSVLRDNDAVVEIELPVPDTLPTSAESS S+SSTWLELY 
Subjt:  SRFELHRRIQE---GIESGNLE--SRMLRGNRSSLQTRELDKTPEAIWYRVHTGYILLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYI

Query:  ESVHI
        ESVH+
Subjt:  ESVHI

TYK04298.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]1.8e-1851.22Show/hide
Query:  TTYQPII--SLIS--HPFPLKLSEHFKERVKEEEEEEFRGLRLKKIGKSSCKASHCRICVQPVNLWCFSRF----ELHRRIQE---GIESGNLE--SRML
        TTY+ I   + IS  H FP KL EHF+ERVK EEEEEFR ++ +   +S+  +S      +P     FS      E+H+  Q+    IESG       M 
Subjt:  TTYQPII--SLIS--HPFPLKLSEHFKERVKEEEEEEFRGLRLKKIGKSSCKASHCRICVQPVNLWCFSRF----ELHRRIQE---GIESGNLE--SRML

Query:  RGNRSSLQTRELDKTPEAIWYRVHTGYILLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSS
        RGNRSSLQT ELDKT             LLSTLSVLRDNDAVVEIELPVPD LPTSA+SS S+S
Subjt:  RGNRSSLQTRELDKTPEAIWYRVHTGYILLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSS

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]6.2e-2744.64Show/hide
Query:  KLHH-RFTTYQPIISLISHPFPLKLSEHFKERVKEEEEEEFRGLRLKKIGKSSCKASHCRI-----CVQPVNLWCFSRF-------ELHRRIQEGIESGN
        K+HH +   +QP      H FP KLSEHF+ERVK EEEEEFRGLRLKKIGKSSCKA+HCRI       +P     FS         + ++++   IESG 
Subjt:  KLHH-RFTTYQPIISLISHPFPLKLSEHFKERVKEEEEEEFRGLRLKKIGKSSCKASHCRI-----CVQPVNLWCFSRF-------ELHRRIQEGIESGN

Query:  LE--SRMLRGNRSSLQTRELDKTPEAIWYRVHT------GYIL------LSTLSVLRDNDAVV-------------------------------------
              M RGNRSSLQT +LDK   +I Y          G +       LSTLSVLRDNDAVV                                     
Subjt:  LE--SRMLRGNRSSLQTRELDKTPEAIWYRVHT------GYIL------LSTLSVLRDNDAVV-------------------------------------

Query:  ---EIELPVPDTLPTSAESSRSSSSTWLELYIE
           EIEL VPDTLPTSAESS S+SSTWLE   E
Subjt:  ---EIELPVPDTLPTSAESSRSSSSTWLELYIE

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]8.1e-1962.86Show/hide
Query:  SRFELHRRIQE---GIESGNLE--SRMLRGNRSSLQTRELDKTPEAIWYRVHTGYILLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYI
        S  E+H+  Q+    IESG       MLRGNRSSLQ+ ELD T              LSTLSVLRDNDAVVEIELPVPDTLPTSAESS S+SSTWLELY 
Subjt:  SRFELHRRIQE---GIESGNLE--SRMLRGNRSSLQTRELDKTPEAIWYRVHTGYILLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYI

Query:  ESVHI
        ESVH+
Subjt:  ESVHI

TrEMBL top hitse value%identityAlignment
A0A5A7UGD0 Uncharacterized protein6.9e-2450.87Show/hide
Query:  YQPIISLISHPFPLKLSEHFKERVKEEEEEEFRGLRLKKIGKSSCKASHCRICVQPVNLWCFSRFELHRRIQEGIESGNLESRMLRGNRSSLQTRELDKT
        +Q    L  H F  KLSE+FKERVK EEEEEFRGLRLKK+ K   ++   +     +NLW    F L   I      G +     RGNR SLQT +LDKT
Subjt:  YQPIISLISHPFPLKLSEHFKERVKEEEEEEFRGLRLKKIGKSSCKASHCRICVQPVNLWCFSRFELHRRIQEGIESGNLESRMLRGNRSSLQTRELDKT

Query:  PEAIWYRVHTGYILLSTLSVLRDNDAV-----------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI
                      LSTLSVLRDNDAV           VEIELP+PDTLPT AES  S+SSTWLELY ESVH+
Subjt:  PEAIWYRVHTGYILLSTLSVLRDNDAV-----------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI

A0A5A7V9N3 Reverse transcriptase3.9e-1962.86Show/hide
Query:  SRFELHRRIQE---GIESGNLE--SRMLRGNRSSLQTRELDKTPEAIWYRVHTGYILLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYI
        S  E+H+  Q+    IESG       MLRGNRSSLQ+ ELD T              LSTLSVLRDNDAVVEIELPVPDTLPTSAESS S+SSTWLELY 
Subjt:  SRFELHRRIQE---GIESGNLE--SRMLRGNRSSLQTRELDKTPEAIWYRVHTGYILLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYI

Query:  ESVHI
        ESVH+
Subjt:  ESVHI

A0A5D3BZ50 Pentatricopeptide repeat-containing protein8.7e-1951.22Show/hide
Query:  TTYQPII--SLIS--HPFPLKLSEHFKERVKEEEEEEFRGLRLKKIGKSSCKASHCRICVQPVNLWCFSRF----ELHRRIQE---GIESGNLE--SRML
        TTY+ I   + IS  H FP KL EHF+ERVK EEEEEFR ++ +   +S+  +S      +P     FS      E+H+  Q+    IESG       M 
Subjt:  TTYQPII--SLIS--HPFPLKLSEHFKERVKEEEEEEFRGLRLKKIGKSSCKASHCRICVQPVNLWCFSRF----ELHRRIQE---GIESGNLE--SRML

Query:  RGNRSSLQTRELDKTPEAIWYRVHTGYILLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSS
        RGNRSSLQT ELDKT             LLSTLSVLRDNDAVVEIELPVPD LPTSA+SS S+S
Subjt:  RGNRSSLQTRELDKTPEAIWYRVHTGYILLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSS

A0A5D3CAC6 Uncharacterized protein3.0e-2744.64Show/hide
Query:  KLHH-RFTTYQPIISLISHPFPLKLSEHFKERVKEEEEEEFRGLRLKKIGKSSCKASHCRI-----CVQPVNLWCFSRF-------ELHRRIQEGIESGN
        K+HH +   +QP      H FP KLSEHF+ERVK EEEEEFRGLRLKKIGKSSCKA+HCRI       +P     FS         + ++++   IESG 
Subjt:  KLHH-RFTTYQPIISLISHPFPLKLSEHFKERVKEEEEEEFRGLRLKKIGKSSCKASHCRI-----CVQPVNLWCFSRF-------ELHRRIQEGIESGN

Query:  LE--SRMLRGNRSSLQTRELDKTPEAIWYRVHT------GYIL------LSTLSVLRDNDAVV-------------------------------------
              M RGNRSSLQT +LDK   +I Y          G +       LSTLSVLRDNDAVV                                     
Subjt:  LE--SRMLRGNRSSLQTRELDKTPEAIWYRVHT------GYIL------LSTLSVLRDNDAVV-------------------------------------

Query:  ---EIELPVPDTLPTSAESSRSSSSTWLELYIE
           EIEL VPDTLPTSAESS S+SSTWLE   E
Subjt:  ---EIELPVPDTLPTSAESSRSSSSTWLELYIE

A0A5D3DSY7 Putative Retrotransposon protein3.9e-1962.86Show/hide
Query:  SRFELHRRIQE---GIESGNLE--SRMLRGNRSSLQTRELDKTPEAIWYRVHTGYILLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYI
        S  E+H+  Q+    IESG       MLRGNRSSLQ+ ELD T              LSTLSVLRDNDAVVEIELPVPDTLPTSAESS S+SSTWLELY 
Subjt:  SRFELHRRIQE---GIESGNLE--SRMLRGNRSSLQTRELDKTPEAIWYRVHTGYILLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYI

Query:  ESVHI
        ESVH+
Subjt:  ESVHI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAGCAGGAAATTGCACCACCGCTTCACTACTTATCAGCCTATTATCAGCCTCATTTCTCATCCTTTTCCATTGAAACTTTCAGAGCACTTTAAGGAGAGAGTGAA
GGAGGAGGAAGAAGAAGAATTTCGTGGTTTGAGATTGAAGAAGATAGGGAAAAGCTCATGCAAAGCCAGCCATTGCAGAATCTGTGTTCAACCTGTCAACCTCTGGTGTT
TTAGTCGGTTTGAGCTACACAGAAGGATTCAAGAGGGTATCGAATCTGGAAATCTGGAAAGTAGGATGCTAAGAGGAAATAGGTCGAGTCTACAAACTAGGGAACTAGAT
AAGACACCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCTGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTTGTAGAGATCGAGCTCCCGGTGCC
TGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTCATATTGGAAATGTTTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGACAGCAGGAAATTGCACCACCGCTTCACTACTTATCAGCCTATTATCAGCCTCATTTCTCATCCTTTTCCATTGAAACTTTCAGAGCACTTTAAGGAGAGAGTGAA
GGAGGAGGAAGAAGAAGAATTTCGTGGTTTGAGATTGAAGAAGATAGGGAAAAGCTCATGCAAAGCCAGCCATTGCAGAATCTGTGTTCAACCTGTCAACCTCTGGTGTT
TTAGTCGGTTTGAGCTACACAGAAGGATTCAAGAGGGTATCGAATCTGGAAATCTGGAAAGTAGGATGCTAAGAGGAAATAGGTCGAGTCTACAAACTAGGGAACTAGAT
AAGACACCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCTGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTTGTAGAGATCGAGCTCCCGGTGCC
TGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTCATATTGGAAATGTTTTGTAA
Protein sequenceShow/hide protein sequence
MDSRKLHHRFTTYQPIISLISHPFPLKLSEHFKERVKEEEEEEFRGLRLKKIGKSSCKASHCRICVQPVNLWCFSRFELHRRIQEGIESGNLESRMLRGNRSSLQTRELD
KTPEAIWYRVHTGYILLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHIGNVL