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Spg005408 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg005408
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description40S ribosomal protein S13-like
Genome locationscaffold6:35369066..35373289
RNA-Seq ExpressionSpg005408
SyntenySpg005408
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005829 - cytosol (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsIPR012606 - Ribosomal protein S13/S15, N-terminal
IPR023029 - Ribosomal protein S15P


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG9156164.1 hypothetical protein Leryth_015579 [Lithospermum erythrorhizon]3.8e-0979.17Show/hide
Query:  EVAENICKFSNKGLTLSQIGVILCDSHRIAHVKSVTRSKNLRILKAHA
        EV ENICKF+ KGLT SQIGVIL DSH IA VKSVT +K LRILKAHA
Subjt:  EVAENICKFSNKGLTLSQIGVILCDSHRIAHVKSVTRSKNLRILKAHA

PQQ03516.1 40S ribosomal protein S13-2-like [Prunus yedoensis var. nudiflora]1.3e-0976.6Show/hide
Query:  EVAENICKFSNKGLTLSQIGVILCDSHRIAHVKSVTRSKNLRILKAH
        +V ENICKF+ KG+T SQIGVILCDSH IA VKSVT SK LR+LKAH
Subjt:  EVAENICKFSNKGLTLSQIGVILCDSHRIAHVKSVTRSKNLRILKAH

XP_008791337.2 40S ribosomal protein S13-like [Phoenix dactylifera]4.5e-1078Show/hide
Query:  EVAENICKFSNKGLTLSQIGVILCDSHRIAHVKSVTRSKNLRILKAHAFG
        +V ENICKF+ KGLT SQIGVIL DSH IA VKSVT SK LRILKAH FG
Subjt:  EVAENICKFSNKGLTLSQIGVILCDSHRIAHVKSVTRSKNLRILKAHAFG

XP_022143980.1 40S ribosomal protein S13-like [Momordica charantia]3.8e-0980.85Show/hide
Query:  EVAENICKFSNKGLTLSQIGVILCDSHRIAHVKSVTRSKNLRILKAH
        +VAENICKF+ KGLT SQIGVIL DSH IA VKSVT SK LRILKAH
Subjt:  EVAENICKFSNKGLTLSQIGVILCDSHRIAHVKSVTRSKNLRILKAH

XP_038906798.1 40S ribosomal protein S13 [Benincasa hispida]3.8e-0980.85Show/hide
Query:  EVAENICKFSNKGLTLSQIGVILCDSHRIAHVKSVTRSKNLRILKAH
        +VAENICKF+ KGLT SQIGVIL DSH IA VKSVT SK LRILKAH
Subjt:  EVAENICKFSNKGLTLSQIGVILCDSHRIAHVKSVTRSKNLRILKAH

TrEMBL top hitse value%identityAlignment
A0A314ZNH8 40S ribosomal protein S13-2-like6.3e-1076.6Show/hide
Query:  EVAENICKFSNKGLTLSQIGVILCDSHRIAHVKSVTRSKNLRILKAH
        +V ENICKF+ KG+T SQIGVILCDSH IA VKSVT SK LR+LKAH
Subjt:  EVAENICKFSNKGLTLSQIGVILCDSHRIAHVKSVTRSKNLRILKAH

A0A6J1HJL3 40S ribosomal protein S13-like1.8e-0980.85Show/hide
Query:  EVAENICKFSNKGLTLSQIGVILCDSHRIAHVKSVTRSKNLRILKAH
        +VAENICKF+ KGLT SQIGVIL DSH IA VKSVT SK LRILKAH
Subjt:  EVAENICKFSNKGLTLSQIGVILCDSHRIAHVKSVTRSKNLRILKAH

A0A6J1KV63 40S ribosomal protein S13-like1.8e-0980.85Show/hide
Query:  EVAENICKFSNKGLTLSQIGVILCDSHRIAHVKSVTRSKNLRILKAH
        +VAENICKF+ KGLT SQIGVIL DSH IA VKSVT SK LRILKAH
Subjt:  EVAENICKFSNKGLTLSQIGVILCDSHRIAHVKSVTRSKNLRILKAH

A0A6P3ZXS3 40S ribosomal protein S13 isoform X11.8e-0979.17Show/hide
Query:  EVAENICKFSNKGLTLSQIGVILCDSHRIAHVKSVTRSKNLRILKAHA
        +V ENICKF+ KGLT SQIGVIL DSH IA VKSVT SK LRILKAHA
Subjt:  EVAENICKFSNKGLTLSQIGVILCDSHRIAHVKSVTRSKNLRILKAHA

V7CE67 Ribosomal_S13_N domain-containing protein1.8e-0979.17Show/hide
Query:  EVAENICKFSNKGLTLSQIGVILCDSHRIAHVKSVTRSKNLRILKAHA
        +V ENICKF+ KGLT SQIGVIL DSH IA VKSVT SK LRILKAHA
Subjt:  EVAENICKFSNKGLTLSQIGVILCDSHRIAHVKSVTRSKNLRILKAHA

SwissProt top hitse value%identityAlignment
P46298 40S ribosomal protein S131.2e-1076.6Show/hide
Query:  EVAENICKFSNKGLTLSQIGVILCDSHRIAHVKSVTRSKNLRILKAH
        +V E ICKF+ KGLT SQIGVIL DSH IA VKSVT SK LRILKAH
Subjt:  EVAENICKFSNKGLTLSQIGVILCDSHRIAHVKSVTRSKNLRILKAH

P59223 40S ribosomal protein S13-13.6e-1074.47Show/hide
Query:  EVAENICKFSNKGLTLSQIGVILCDSHRIAHVKSVTRSKNLRILKAH
        +V E+ICKF+ KGLT SQIGVIL DSH I  VKSVT SK LRILKAH
Subjt:  EVAENICKFSNKGLTLSQIGVILCDSHRIAHVKSVTRSKNLRILKAH

P59224 40S ribosomal protein S13-23.6e-1074.47Show/hide
Query:  EVAENICKFSNKGLTLSQIGVILCDSHRIAHVKSVTRSKNLRILKAH
        +V E+ICKF+ KGLT SQIGVIL DSH I  VKSVT SK LRILKAH
Subjt:  EVAENICKFSNKGLTLSQIGVILCDSHRIAHVKSVTRSKNLRILKAH

P62302 40S ribosomal protein S137.2e-1176.6Show/hide
Query:  EVAENICKFSNKGLTLSQIGVILCDSHRIAHVKSVTRSKNLRILKAH
        +V ENICKF+ KGLT SQIGVIL DSH IA V SVT SK LRILKAH
Subjt:  EVAENICKFSNKGLTLSQIGVILCDSHRIAHVKSVTRSKNLRILKAH

Q56JX8 40S ribosomal protein S134.1e-0660.87Show/hide
Query:  EVAENICKFSNKGLTLSQIGVILCDSHRIAHVKSVTRSKNLRILKA
        +V E I K + KGLT SQIGVIL DSH +A V+ VT +K LRILK+
Subjt:  EVAENICKFSNKGLTLSQIGVILCDSHRIAHVKSVTRSKNLRILKA

Arabidopsis top hitse value%identityAlignment
AT3G60770.1 Ribosomal protein S13/S152.5e-1174.47Show/hide
Query:  EVAENICKFSNKGLTLSQIGVILCDSHRIAHVKSVTRSKNLRILKAH
        +V E+ICKF+ KGLT SQIGVIL DSH I  VKSVT SK LRILKAH
Subjt:  EVAENICKFSNKGLTLSQIGVILCDSHRIAHVKSVTRSKNLRILKAH

AT4G00100.1 ribosomal protein S13A2.5e-1174.47Show/hide
Query:  EVAENICKFSNKGLTLSQIGVILCDSHRIAHVKSVTRSKNLRILKAH
        +V E+ICKF+ KGLT SQIGVIL DSH I  VKSVT SK LRILKAH
Subjt:  EVAENICKFSNKGLTLSQIGVILCDSHRIAHVKSVTRSKNLRILKAH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCACCCAGTCAGTGCAGTCGAGTCTCACCAATCAAAGCACTAAATTTTTGTGATCATGAAGTTCTTGAGCACGGAAATGTCTTAGAGGTTGCGGAGAACATTTGCAA
ATTTTCCAATAAGGGTTTGACACTATCTCAAATTGGTGTTATTCTCTGTGATTCTCACAGGATTGCTCATGTTAAAAGTGTAACTAGGAGCAAGAACTTGCGTATATTGA
AGGCTCATGCATTTGGAAAGAGACAGGAAAGACAAGGATTCCAAGTTCAGGTTGATTTTGGTGGAGAGCAGGATCCATCGCATGGTCAGGTAAAGGCAAGGGAAGGTGCA
AGGCGACTGATGAGAATCCTATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCACCCAGTCAGTGCAGTCGAGTCTCACCAATCAAAGCACTAAATTTTTGTGATCATGAAGTTCTTGAGCACGGAAATGTCTTAGAGGTTGCGGAGAACATTTGCAA
ATTTTCCAATAAGGGTTTGACACTATCTCAAATTGGTGTTATTCTCTGTGATTCTCACAGGATTGCTCATGTTAAAAGTGTAACTAGGAGCAAGAACTTGCGTATATTGA
AGGCTCATGCATTTGGAAAGAGACAGGAAAGACAAGGATTCCAAGTTCAGGTTGATTTTGGTGGAGAGCAGGATCCATCGCATGGTCAGGTAAAGGCAAGGGAAGGTGCA
AGGCGACTGATGAGAATCCTATAG
Protein sequenceShow/hide protein sequence
MAPSQCSRVSPIKALNFCDHEVLEHGNVLEVAENICKFSNKGLTLSQIGVILCDSHRIAHVKSVTRSKNLRILKAHAFGKRQERQGFQVQVDFGGEQDPSHGQVKAREGA
RRLMRIL