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Spg005426 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg005426
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold6:35921002..35922710
RNA-Seq ExpressionSpg005426
SyntenySpg005426
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040194.1 gag/pol protein [Cucumis melo var. makuwa]3.1e-2059.62Show/hide
Query:  GFSSKPGGSLVFSDVLSILE---CTSRIRSSI---WPRGNRPSLQTGELDK-----------------TVEIELPVPDTLPTSAESSGSSSSTWVELFIE
        GFSSKPGG LVFSD LSI E      ++   I   WPRGNRP LQTGELDK                  VEIELP+PDTLPTSAESSGS+SSTW+EL+ E
Subjt:  GFSSKPGGSLVFSDVLSILE---CTSRIRSSI---WPRGNRPSLQTGELDK-----------------TVEIELPVPDTLPTSAESSGSSSSTWVELFIE

Query:  SVHI
        SVH+
Subjt:  SVHI

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]4.8e-2157.63Show/hide
Query:  IGKSSCKPAIAESEFNLATSGFGFG-------------FSSKPGGSLVFSDVLSILECTSRIRSSIWPRGNRPSLQTGELDKTVEIELPVPDTLPTSAES
        I K + KPAIAES  N       FG             F SK GG LVFSD LSIL           PRGNRP+L TG+LDKTVEIELPVPDTLPTSAES
Subjt:  IGKSSCKPAIAESEFNLATSGFGFG-------------FSSKPGGSLVFSDVLSILECTSRIRSSIWPRGNRPSLQTGELDKTVEIELPVPDTLPTSAES

Query:  SGSSSSTWVELFIESVHI
        S S+SSTW+EL+ ESVH+
Subjt:  SGSSSSTWVELFIESVHI

KAA0066795.1 uncharacterized protein E6C27_scaffold271G001440 [Cucumis melo var. makuwa]6.3e-2171.08Show/hide
Query:  GFSSKPGGSLVFSDVLSILEC--TSRIRSSIWPRGNRPSLQTGELDKTVEIELPVPDTLPTSAESSGSSSSTWVELFIESVHI
        G SSKP G LVFSD LS+LE   + +    +WPRGNRPSLQT ELDKT  IELPVPDTLPTSAESSGS+SSTW+EL+ ESVH+
Subjt:  GFSSKPGGSLVFSDVLSILEC--TSRIRSSIWPRGNRPSLQTGELDKTVEIELPVPDTLPTSAESSGSSSSTWVELFIESVHI

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]2.6e-1962.24Show/hide
Query:  GFSSKPGGSLVFSDVLSILECTSRIRSSIW--PRGNRPSLQTGELDKTV---------------EIELPVPDTLPTSAESSGSSSSTWVELFIESVHI
        GFSSKPGG LV SD LSILE   ++   ++  PRGNR SLQTGELDKTV                IELPVPDTLPTSAESSGS+SSTW+EL+ ESVH+
Subjt:  GFSSKPGGSLVFSDVLSILECTSRIRSSIW--PRGNRPSLQTGELDKTV---------------EIELPVPDTLPTSAESSGSSSSTWVELFIESVHI

TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]3.1e-2059.62Show/hide
Query:  GFSSKPGGSLVFSDVLSILE---CTSRIRSSI---WPRGNRPSLQTGELDK-----------------TVEIELPVPDTLPTSAESSGSSSSTWVELFIE
        GFSSKPGG LVFSD LSI E      ++   I   WPRGNRP LQTGELDK                  VEIELP+PDTLPTSAESSGS+SSTW+EL+ E
Subjt:  GFSSKPGGSLVFSDVLSILE---CTSRIRSSI---WPRGNRPSLQTGELDK-----------------TVEIELPVPDTLPTSAESSGSSSSTWVELFIE

Query:  SVHI
        SVH+
Subjt:  SVHI

TrEMBL top hitse value%identityAlignment
A0A5A7T9P7 Gag/pol protein1.5e-2059.62Show/hide
Query:  GFSSKPGGSLVFSDVLSILE---CTSRIRSSI---WPRGNRPSLQTGELDK-----------------TVEIELPVPDTLPTSAESSGSSSSTWVELFIE
        GFSSKPGG LVFSD LSI E      ++   I   WPRGNRP LQTGELDK                  VEIELP+PDTLPTSAESSGS+SSTW+EL+ E
Subjt:  GFSSKPGGSLVFSDVLSILE---CTSRIRSSI---WPRGNRPSLQTGELDK-----------------TVEIELPVPDTLPTSAESSGSSSSTWVELFIE

Query:  SVHI
        SVH+
Subjt:  SVHI

A0A5A7UAH6 CCHC-type domain-containing protein2.3e-2157.63Show/hide
Query:  IGKSSCKPAIAESEFNLATSGFGFG-------------FSSKPGGSLVFSDVLSILECTSRIRSSIWPRGNRPSLQTGELDKTVEIELPVPDTLPTSAES
        I K + KPAIAES  N       FG             F SK GG LVFSD LSIL           PRGNRP+L TG+LDKTVEIELPVPDTLPTSAES
Subjt:  IGKSSCKPAIAESEFNLATSGFGFG-------------FSSKPGGSLVFSDVLSILECTSRIRSSIWPRGNRPSLQTGELDKTVEIELPVPDTLPTSAES

Query:  SGSSSSTWVELFIESVHI
        S S+SSTW+EL+ ESVH+
Subjt:  SGSSSSTWVELFIESVHI

A0A5D3CJX3 CCHC-type domain-containing protein1.3e-1962.24Show/hide
Query:  GFSSKPGGSLVFSDVLSILECTSRIRSSIW--PRGNRPSLQTGELDKTV---------------EIELPVPDTLPTSAESSGSSSSTWVELFIESVHI
        GFSSKPGG LV SD LSILE   ++   ++  PRGNR SLQTGELDKTV                IELPVPDTLPTSAESSGS+SSTW+EL+ ESVH+
Subjt:  GFSSKPGGSLVFSDVLSILECTSRIRSSIW--PRGNRPSLQTGELDKTV---------------EIELPVPDTLPTSAESSGSSSSTWVELFIESVHI

A0A5D3DR18 Gag/pol protein1.5e-2059.62Show/hide
Query:  GFSSKPGGSLVFSDVLSILE---CTSRIRSSI---WPRGNRPSLQTGELDK-----------------TVEIELPVPDTLPTSAESSGSSSSTWVELFIE
        GFSSKPGG LVFSD LSI E      ++   I   WPRGNRP LQTGELDK                  VEIELP+PDTLPTSAESSGS+SSTW+EL+ E
Subjt:  GFSSKPGGSLVFSDVLSILE---CTSRIRSSI---WPRGNRPSLQTGELDK-----------------TVEIELPVPDTLPTSAESSGSSSSTWVELFIE

Query:  SVHI
        SVH+
Subjt:  SVHI

A0A5D3DWP3 Uncharacterized protein3.0e-2171.08Show/hide
Query:  GFSSKPGGSLVFSDVLSILEC--TSRIRSSIWPRGNRPSLQTGELDKTVEIELPVPDTLPTSAESSGSSSSTWVELFIESVHI
        G SSKP G LVFSD LS+LE   + +    +WPRGNRPSLQT ELDKT  IELPVPDTLPTSAESSGS+SSTW+EL+ ESVH+
Subjt:  GFSSKPGGSLVFSDVLSILEC--TSRIRSSIWPRGNRPSLQTGELDKTVEIELPVPDTLPTSAESSGSSSSTWVELFIESVHI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AACTTTAAGGAGAGAGTGAAGGAAGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGGAAAAGTTCATGCAAGCCAGCCATAGCAGAATCTGAGTTCAA
TCTGGCAACCTCTGGTTTTGGATTCGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGATGTTTTGAGTATTCTGGAGTGCACAAGTCGAATCCGAAGCTCTA
TTTGGCCAAGAGGAAATAGGCCGAGTCTACAAACCGGGGAACTAGATAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCGGA
TCAAGCTCCAGTACGTGGGTGGAGTTGTTTATTGAGTCTGTTCATATTGTAAATGTTTTGTAA
mRNA sequenceShow/hide mRNA sequence
AACTTTAAGGAGAGAGTGAAGGAAGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGGAAAAGTTCATGCAAGCCAGCCATAGCAGAATCTGAGTTCAA
TCTGGCAACCTCTGGTTTTGGATTCGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGATGTTTTGAGTATTCTGGAGTGCACAAGTCGAATCCGAAGCTCTA
TTTGGCCAAGAGGAAATAGGCCGAGTCTACAAACCGGGGAACTAGATAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCGGA
TCAAGCTCCAGTACGTGGGTGGAGTTGTTTATTGAGTCTGTTCATATTGTAAATGTTTTGTAA
Protein sequenceShow/hide protein sequence
NFKERVKEEEEEEFRGLRLKKIGKSSCKPAIAESEFNLATSGFGFGFSSKPGGSLVFSDVLSILECTSRIRSSIWPRGNRPSLQTGELDKTVEIELPVPDTLPTSAESSG
SSSSTWVELFIESVHIVNVL