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Spg005430 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg005430
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold6:35608965..35617283
RNA-Seq ExpressionSpg005430
SyntenySpg005430
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]9.4e-1848.72Show/hide
Query:  SLILLEISPKRLPQVLEIYRCSRLVVFAQEGCCVEIELPVPDTLPTSAKSSRISFSTWAKLYIEVVHIVNVLF-----------NVSVGSTGIVRGENVC
        +L +LE+        L I+  S L V       VEIELPVPDTLPTSA+S   + STW +LY E VH+    +            ++VGS GIVRG++VC
Subjt:  SLILLEISPKRLPQVLEIYRCSRLVVFAQEGCCVEIELPVPDTLPTSAKSSRISFSTWAKLYIEVVHIVNVLF-----------NVSVGSTGIVRGENVC

Query:  WLHAVFRAKLAGGPRGG
        WLHAVFRAK AGGP GG
Subjt:  WLHAVFRAKLAGGPRGG

KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]5.5e-1850.83Show/hide
Query:  VEIELPVPDTLPTSAKSSRISFSTWAKLYIEVVHI-------------VNVLFNVSVGSTGIVRGENVCWLHAVFRAKLAGGPRGGSAAEPSRGAPTASG
        V IELPVPD LPTSA+SS  + STW +LY E VH+             ++++FNVSVGSTGIVRG++VCWLHAVFRAK  GGP GG     + G+ T  G
Subjt:  VEIELPVPDTLPTSAKSSRISFSTWAKLYIEVVHI-------------VNVLFNVSVGSTGIVRGENVCWLHAVFRAKLAGGPRGGSAAEPSRGAPTASG

Query:  FRGREQRRFTPGVNVSGRQE
            E  RF    +  GR E
Subjt:  FRGREQRRFTPGVNVSGRQE

KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]2.2e-2263.33Show/hide
Query:  MIEILNPRLYGTVCTQVETELPVPDTLPTSVESSRTSFSTWAKLYIESVHI-------------VNVLFNISVGSTGIVRGDDVCWLHAV
        M EIL+ RLYGTVCTQV+ ELP+PDTLPTS ESS ++F+TW +LY ESVH+             ++++FN+SVGSTGIVRGDDVCWLHAV
Subjt:  MIEILNPRLYGTVCTQVETELPVPDTLPTSVESSRTSFSTWAKLYIESVHI-------------VNVLFNISVGSTGIVRGDDVCWLHAV

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]5.4e-2149.25Show/hide
Query:  IYRCSRLVVFAQEGCCVEIELPVPDTLPTSAKSSRISFSTWAKLYIEVVHI-------------VNVLFNVSVGSTGIVRGENVCWLHAVFRAKLAGGPR
        I+  S L V       VEIELPVPDTLPTSA+SS  + STW +LY E VH+             ++++F+V VGSTGIVRG++VCWLHAVFRAK  GGP 
Subjt:  IYRCSRLVVFAQEGCCVEIELPVPDTLPTSAKSSRISFSTWAKLYIEVVHI-------------VNVLFNVSVGSTGIVRGENVCWLHAVFRAKLAGGPR

Query:  GG-SAAEPSRGAPTASGFRGREQRRFTPGVNVSG
        GG +  E     P     R R  RR  P VN+ G
Subjt:  GG-SAAEPSRGAPTASGFRGREQRRFTPGVNVSG

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]5.4e-2149.25Show/hide
Query:  IYRCSRLVVFAQEGCCVEIELPVPDTLPTSAKSSRISFSTWAKLYIEVVHI-------------VNVLFNVSVGSTGIVRGENVCWLHAVFRAKLAGGPR
        I+  S L V       VEIELPVPDTLPTSA+SS  + STW +LY E VH+             ++++F+V VGSTGIVRG++VCWLHAVFRAK  GGP 
Subjt:  IYRCSRLVVFAQEGCCVEIELPVPDTLPTSAKSSRISFSTWAKLYIEVVHI-------------VNVLFNVSVGSTGIVRGENVCWLHAVFRAKLAGGPR

Query:  GG-SAAEPSRGAPTASGFRGREQRRFTPGVNVSG
        GG +  E     P     R R  RR  P VN+ G
Subjt:  GG-SAAEPSRGAPTASGFRGREQRRFTPGVNVSG

TrEMBL top hitse value%identityAlignment
A0A5A7TKT0 Reverse transcriptase4.6e-1848.72Show/hide
Query:  SLILLEISPKRLPQVLEIYRCSRLVVFAQEGCCVEIELPVPDTLPTSAKSSRISFSTWAKLYIEVVHIVNVLF-----------NVSVGSTGIVRGENVC
        +L +LE+        L I+  S L V       VEIELPVPDTLPTSA+S   + STW +LY E VH+    +            ++VGS GIVRG++VC
Subjt:  SLILLEISPKRLPQVLEIYRCSRLVVFAQEGCCVEIELPVPDTLPTSAKSSRISFSTWAKLYIEVVHIVNVLF-----------NVSVGSTGIVRGENVC

Query:  WLHAVFRAKLAGGPRGG
        WLHAVFRAK AGGP GG
Subjt:  WLHAVFRAKLAGGPRGG

A0A5A7UT17 CCHC-type domain-containing protein2.7e-1850.83Show/hide
Query:  VEIELPVPDTLPTSAKSSRISFSTWAKLYIEVVHI-------------VNVLFNVSVGSTGIVRGENVCWLHAVFRAKLAGGPRGGSAAEPSRGAPTASG
        V IELPVPD LPTSA+SS  + STW +LY E VH+             ++++FNVSVGSTGIVRG++VCWLHAVFRAK  GGP GG     + G+ T  G
Subjt:  VEIELPVPDTLPTSAKSSRISFSTWAKLYIEVVHI-------------VNVLFNVSVGSTGIVRGENVCWLHAVFRAKLAGGPRGGSAAEPSRGAPTASG

Query:  FRGREQRRFTPGVNVSGRQE
            E  RF    +  GR E
Subjt:  FRGREQRRFTPGVNVSGRQE

A0A5A7V638 Uncharacterized protein1.1e-2263.33Show/hide
Query:  MIEILNPRLYGTVCTQVETELPVPDTLPTSVESSRTSFSTWAKLYIESVHI-------------VNVLFNISVGSTGIVRGDDVCWLHAV
        M EIL+ RLYGTVCTQV+ ELP+PDTLPTS ESS ++F+TW +LY ESVH+             ++++FN+SVGSTGIVRGDDVCWLHAV
Subjt:  MIEILNPRLYGTVCTQVETELPVPDTLPTSVESSRTSFSTWAKLYIESVHI-------------VNVLFNISVGSTGIVRGDDVCWLHAV

A0A5A7V9N3 Reverse transcriptase2.6e-2149.25Show/hide
Query:  IYRCSRLVVFAQEGCCVEIELPVPDTLPTSAKSSRISFSTWAKLYIEVVHI-------------VNVLFNVSVGSTGIVRGENVCWLHAVFRAKLAGGPR
        I+  S L V       VEIELPVPDTLPTSA+SS  + STW +LY E VH+             ++++F+V VGSTGIVRG++VCWLHAVFRAK  GGP 
Subjt:  IYRCSRLVVFAQEGCCVEIELPVPDTLPTSAKSSRISFSTWAKLYIEVVHI-------------VNVLFNVSVGSTGIVRGENVCWLHAVFRAKLAGGPR

Query:  GG-SAAEPSRGAPTASGFRGREQRRFTPGVNVSG
        GG +  E     P     R R  RR  P VN+ G
Subjt:  GG-SAAEPSRGAPTASGFRGREQRRFTPGVNVSG

A0A5D3DSY7 Putative Retrotransposon protein2.6e-2149.25Show/hide
Query:  IYRCSRLVVFAQEGCCVEIELPVPDTLPTSAKSSRISFSTWAKLYIEVVHI-------------VNVLFNVSVGSTGIVRGENVCWLHAVFRAKLAGGPR
        I+  S L V       VEIELPVPDTLPTSA+SS  + STW +LY E VH+             ++++F+V VGSTGIVRG++VCWLHAVFRAK  GGP 
Subjt:  IYRCSRLVVFAQEGCCVEIELPVPDTLPTSAKSSRISFSTWAKLYIEVVHI-------------VNVLFNVSVGSTGIVRGENVCWLHAVFRAKLAGGPR

Query:  GG-SAAEPSRGAPTASGFRGREQRRFTPGVNVSG
        GG +  E     P     R R  RR  P VN+ G
Subjt:  GG-SAAEPSRGAPTASGFRGREQRRFTPGVNVSG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGACATCTCATTGTCTCTAATTCTCTTAGAGATCTCTCCCAAAAGACTCCCACAAGTCTTAGAGATATACCGGTGTAGCCGATTGGTGGTGTTCGCACAAGAGGG
TTGTTGCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTAAAAGTTCTAGAATAAGCTTCAGTACGTGGGCGAAGTTGTATATCGAGGTTGTTCATA
TTGTAAATGTTTTGTTCAACGTTTCAGTAGGGTCAACAGGGATTGTTAGAGGTGAAAATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGAGA
GGGGGTTCGGCTGCGGAGCCTAGTCGTGGAGCTCCAACAGCTAGTGGTTTTCGAGGTCGTGAGCAGCGGAGGTTCACACCTGGAGTGAATGTTTCAGGCCGTCAAGAGTT
CAAGCGCCGATCTGGTGGCCAGTTGTCGAGGCAGATGAGTTCGGAGCACTTGAGGGAGAGAGTGAAGGAAGAAGAAGATGATGAATTTCGTGGTTTTGAGGTTGAAGAAG
ATAGGAAAAAGCTCATGCAAAGCCAGCCATTGCATAATGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAACTAAGAGGGTAGCAGAGAACCTCGAATCTGTCTTGTCT
GTGTTCGGGGCGTTTCTGGAAACATTGGTTGAGAATCTCGTTTCATTTCTTCCGATTTCTGTTGACTACATGATTGAGATATTGAACCCGAGGCTATATGGTACCGTGTG
CACACAGGTAGAGACCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGTTGAAAGTTCTAGAACAAGCTTCAGTACGTGGGCGAAGTTGTATATTGAGTCTGTTCATA
TTGTAAATGTTTTGTTCAACATTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGATGATGTCTGTTGGCTTCACGCCGTCTCTTCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAAGACATCTCATTGTCTCTAATTCTCTTAGAGATCTCTCCCAAAAGACTCCCACAAGTCTTAGAGATATACCGGTGTAGCCGATTGGTGGTGTTCGCACAAGAGGG
TTGTTGCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTAAAAGTTCTAGAATAAGCTTCAGTACGTGGGCGAAGTTGTATATCGAGGTTGTTCATA
TTGTAAATGTTTTGTTCAACGTTTCAGTAGGGTCAACAGGGATTGTTAGAGGTGAAAATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGAGA
GGGGGTTCGGCTGCGGAGCCTAGTCGTGGAGCTCCAACAGCTAGTGGTTTTCGAGGTCGTGAGCAGCGGAGGTTCACACCTGGAGTGAATGTTTCAGGCCGTCAAGAGTT
CAAGCGCCGATCTGGTGGCCAGTTGTCGAGGCAGATGAGTTCGGAGCACTTGAGGGAGAGAGTGAAGGAAGAAGAAGATGATGAATTTCGTGGTTTTGAGGTTGAAGAAG
ATAGGAAAAAGCTCATGCAAAGCCAGCCATTGCATAATGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAACTAAGAGGGTAGCAGAGAACCTCGAATCTGTCTTGTCT
GTGTTCGGGGCGTTTCTGGAAACATTGGTTGAGAATCTCGTTTCATTTCTTCCGATTTCTGTTGACTACATGATTGAGATATTGAACCCGAGGCTATATGGTACCGTGTG
CACACAGGTAGAGACCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGTTGAAAGTTCTAGAACAAGCTTCAGTACGTGGGCGAAGTTGTATATTGAGTCTGTTCATA
TTGTAAATGTTTTGTTCAACATTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGATGATGTCTGTTGGCTTCACGCCGTCTCTTCGTAG
Protein sequenceShow/hide protein sequence
MKDISLSLILLEISPKRLPQVLEIYRCSRLVVFAQEGCCVEIELPVPDTLPTSAKSSRISFSTWAKLYIEVVHIVNVLFNVSVGSTGIVRGENVCWLHAVFRAKLAGGPR
GGSAAEPSRGAPTASGFRGREQRRFTPGVNVSGRQEFKRRSGGQLSRQMSSEHLRERVKEEEDDEFRGFEVEEDRKKLMQSQPLHNGFLFGLSYTEGTKRVAENLESVLS
VFGAFLETLVENLVSFLPISVDYMIEILNPRLYGTVCTQVETELPVPDTLPTSVESSRTSFSTWAKLYIESVHIVNVLFNISVGSTGIVRGDDVCWLHAVSS