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Spg005446 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg005446
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTHUMP domain-containing protein
Genome locationscaffold7:26666450..26672785
RNA-Seq ExpressionSpg005446
SyntenySpg005446
Gene Ontology termsGO:0006400 - tRNA modification (biological process)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR040183 - THUMP domain-containing protein 1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6585884.1 hypothetical protein SDJN03_18617, partial [Cucurbita argyrosperma subsp. sororia]3.0e-3871.09Show/hide
Query:  ISRSNFNMQPKLHSIAHYIQYFSSSTPETLETSDENETSKRRKICTEDIDHKSVEGEERSTDEHVKGTSVISTKGETRVEKSSPISLVKLTRSGLVLFTF
        I R     +  +  +  Y QYFS+STPET E+SDENETSKRRK+CTEDID++SVE E RSTDEHV GTS IST+   +VEK SPISLVKLTRSGL+L TF
Subjt:  ISRSNFNMQPKLHSIAHYIQYFSSSTPETLETSDENETSKRRKICTEDIDHKSVEGEERSTDEHVKGTSVISTKGETRVEKSSPISLVKLTRSGLVLFTF

Query:  TKDISPDTVYIVSDIIQSLEAGILKSPA
         KDISPDTVYIVSD+IQSLEAG LKSPA
Subjt:  TKDISPDTVYIVSDIIQSLEAGILKSPA

XP_022158307.1 uncharacterized protein LOC111024819 [Momordica charantia]6.5e-4175.78Show/hide
Query:  ISRSNFNMQPKLHSIAHYIQYFSSSTPETLETSDENETSKRRKICTEDIDHKSVEGEERSTDEHVKGTSVISTKGETRVEKSSPISLVKLTRSGLVLFTF
        I R     +  +  +  YIQYFSSSTPE LE SDENE SKRRKICTED+DHKSV+GEERS+DEHV+GTS+ STK E RVEKSSPISLVKLTRSGLVLFT 
Subjt:  ISRSNFNMQPKLHSIAHYIQYFSSSTPETLETSDENETSKRRKICTEDIDHKSVEGEERSTDEHVKGTSVISTKGETRVEKSSPISLVKLTRSGLVLFTF

Query:  TKDISPDTVYIVSDIIQSLEAGILKSPA
         KDISPDTV+IV DIIQSLEAG LKSPA
Subjt:  TKDISPDTVYIVSDIIQSLEAGILKSPA

XP_022930026.1 uncharacterized protein LOC111436464 isoform X1 [Cucurbita moschata]5.2e-3871.09Show/hide
Query:  ISRSNFNMQPKLHSIAHYIQYFSSSTPETLETSDENETSKRRKICTEDIDHKSVEGEERSTDEHVKGTSVISTKGETRVEKSSPISLVKLTRSGLVLFTF
        I R     +  +  +  Y QYFS+STPET E+SDENETSKRRK+CTEDID+KS E E RSTDEHV GTS IST+   +VEK SPISLVKLTRSGL+L TF
Subjt:  ISRSNFNMQPKLHSIAHYIQYFSSSTPETLETSDENETSKRRKICTEDIDHKSVEGEERSTDEHVKGTSVISTKGETRVEKSSPISLVKLTRSGLVLFTF

Query:  TKDISPDTVYIVSDIIQSLEAGILKSPA
         KDISPDTVYIVSD+IQSLEAG LKSPA
Subjt:  TKDISPDTVYIVSDIIQSLEAGILKSPA

XP_022994263.1 uncharacterized protein LOC111490047 isoform X1 [Cucurbita maxima]2.1e-3972.66Show/hide
Query:  ISRSNFNMQPKLHSIAHYIQYFSSSTPETLETSDENETSKRRKICTEDIDHKSVEGEERSTDEHVKGTSVISTKGETRVEKSSPISLVKLTRSGLVLFTF
        I R     +  +  +  Y QYFS+STPET E+SDENETSKRRK+CTEDIDHKSVE E RSTDEHV GTS IST+   +VEK SPISLVKLTRSGL+L TF
Subjt:  ISRSNFNMQPKLHSIAHYIQYFSSSTPETLETSDENETSKRRKICTEDIDHKSVEGEERSTDEHVKGTSVISTKGETRVEKSSPISLVKLTRSGLVLFTF

Query:  TKDISPDTVYIVSDIIQSLEAGILKSPA
         KDISPDTVYIVSD+IQSLEAG LKSPA
Subjt:  TKDISPDTVYIVSDIIQSLEAGILKSPA

XP_022994271.1 uncharacterized protein LOC111490047 isoform X2 [Cucurbita maxima]1.0e-3882.57Show/hide
Query:  QYFSSSTPETLETSDENETSKRRKICTEDIDHKSVEGEERSTDEHVKGTSVISTKGETRVEKSSPISLVKLTRSGLVLFTFTKDISPDTVYIVSDIIQSL
        QYFS+STPET E+SDENETSKRRK+CTEDIDHKSVE E RSTDEHV GTS IST+   +VEK SPISLVKLTRSGL+L TF KDISPDTVYIVSD+IQSL
Subjt:  QYFSSSTPETLETSDENETSKRRKICTEDIDHKSVEGEERSTDEHVKGTSVISTKGETRVEKSSPISLVKLTRSGLVLFTFTKDISPDTVYIVSDIIQSL

Query:  EAGILKSPA
        EAG LKSPA
Subjt:  EAGILKSPA

TrEMBL top hitse value%identityAlignment
A0A6J1DWW8 uncharacterized protein LOC1110248193.2e-4175.78Show/hide
Query:  ISRSNFNMQPKLHSIAHYIQYFSSSTPETLETSDENETSKRRKICTEDIDHKSVEGEERSTDEHVKGTSVISTKGETRVEKSSPISLVKLTRSGLVLFTF
        I R     +  +  +  YIQYFSSSTPE LE SDENE SKRRKICTED+DHKSV+GEERS+DEHV+GTS+ STK E RVEKSSPISLVKLTRSGLVLFT 
Subjt:  ISRSNFNMQPKLHSIAHYIQYFSSSTPETLETSDENETSKRRKICTEDIDHKSVEGEERSTDEHVKGTSVISTKGETRVEKSSPISLVKLTRSGLVLFTF

Query:  TKDISPDTVYIVSDIIQSLEAGILKSPA
         KDISPDTV+IV DIIQSLEAG LKSPA
Subjt:  TKDISPDTVYIVSDIIQSLEAGILKSPA

A0A6J1EP82 uncharacterized protein LOC111436464 isoform X21.2e-3780.73Show/hide
Query:  QYFSSSTPETLETSDENETSKRRKICTEDIDHKSVEGEERSTDEHVKGTSVISTKGETRVEKSSPISLVKLTRSGLVLFTFTKDISPDTVYIVSDIIQSL
        QYFS+STPET E+SDENETSKRRK+CTEDID+KS E E RSTDEHV GTS IST+   +VEK SPISLVKLTRSGL+L TF KDISPDTVYIVSD+IQSL
Subjt:  QYFSSSTPETLETSDENETSKRRKICTEDIDHKSVEGEERSTDEHVKGTSVISTKGETRVEKSSPISLVKLTRSGLVLFTFTKDISPDTVYIVSDIIQSL

Query:  EAGILKSPA
        EAG LKSPA
Subjt:  EAGILKSPA

A0A6J1EPS0 uncharacterized protein LOC111436464 isoform X12.5e-3871.09Show/hide
Query:  ISRSNFNMQPKLHSIAHYIQYFSSSTPETLETSDENETSKRRKICTEDIDHKSVEGEERSTDEHVKGTSVISTKGETRVEKSSPISLVKLTRSGLVLFTF
        I R     +  +  +  Y QYFS+STPET E+SDENETSKRRK+CTEDID+KS E E RSTDEHV GTS IST+   +VEK SPISLVKLTRSGL+L TF
Subjt:  ISRSNFNMQPKLHSIAHYIQYFSSSTPETLETSDENETSKRRKICTEDIDHKSVEGEERSTDEHVKGTSVISTKGETRVEKSSPISLVKLTRSGLVLFTF

Query:  TKDISPDTVYIVSDIIQSLEAGILKSPA
         KDISPDTVYIVSD+IQSLEAG LKSPA
Subjt:  TKDISPDTVYIVSDIIQSLEAGILKSPA

A0A6J1JYM9 uncharacterized protein LOC111490047 isoform X25.1e-3982.57Show/hide
Query:  QYFSSSTPETLETSDENETSKRRKICTEDIDHKSVEGEERSTDEHVKGTSVISTKGETRVEKSSPISLVKLTRSGLVLFTFTKDISPDTVYIVSDIIQSL
        QYFS+STPET E+SDENETSKRRK+CTEDIDHKSVE E RSTDEHV GTS IST+   +VEK SPISLVKLTRSGL+L TF KDISPDTVYIVSD+IQSL
Subjt:  QYFSSSTPETLETSDENETSKRRKICTEDIDHKSVEGEERSTDEHVKGTSVISTKGETRVEKSSPISLVKLTRSGLVLFTFTKDISPDTVYIVSDIIQSL

Query:  EAGILKSPA
        EAG LKSPA
Subjt:  EAGILKSPA

A0A6J1K4P7 uncharacterized protein LOC111490047 isoform X11.0e-3972.66Show/hide
Query:  ISRSNFNMQPKLHSIAHYIQYFSSSTPETLETSDENETSKRRKICTEDIDHKSVEGEERSTDEHVKGTSVISTKGETRVEKSSPISLVKLTRSGLVLFTF
        I R     +  +  +  Y QYFS+STPET E+SDENETSKRRK+CTEDIDHKSVE E RSTDEHV GTS IST+   +VEK SPISLVKLTRSGL+L TF
Subjt:  ISRSNFNMQPKLHSIAHYIQYFSSSTPETLETSDENETSKRRKICTEDIDHKSVEGEERSTDEHVKGTSVISTKGETRVEKSSPISLVKLTRSGLVLFTF

Query:  TKDISPDTVYIVSDIIQSLEAGILKSPA
         KDISPDTVYIVSD+IQSLEAG LKSPA
Subjt:  TKDISPDTVYIVSDIIQSLEAGILKSPA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G09290.1 unknown protein4.1e-0936.15Show/hide
Query:  ISRSNFNMQPKLHSIAHYIQYFSSSTPETLETSDENETSKRRKIC---TEDIDHKSVEGEERSTDEHVKGTSVISTKGETRVEKSSPISLVKLTRSGLVL
        I R     +  +  +  YI       PE L ++     SK++K+C   TE+   K+V  E  +  E  +  +V   K     E +S +SLVKLT+SGL+L
Subjt:  ISRSNFNMQPKLHSIAHYIQYFSSSTPETLETSDENETSKRRKIC---TEDIDHKSVEGEERSTDEHVKGTSVISTKGETRVEKSSPISLVKLTRSGLVL

Query:  FTFTKDISPDTVYIVSDIIQSLEAGILKSP
        FTF  + SP+T  IVS + QS+E+G LK+P
Subjt:  FTFTKDISPDTVYIVSDIIQSLEAGILKSP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCATGGGAAGAGAAGAGCAAAGTGTTGTCTGCAAACTGAAGATGAGTGATATTGTGATCTCTAGAAGCAATTTCAACATGCAACCTAAACTACATAGTATTGCACA
TTATATTCAGTACTTCAGTAGTTCTACGCCAGAAACTTTGGAGACATCGGATGAAAATGAAACTTCTAAACGGAGGAAAATTTGTACAGAGGACATTGATCACAAAAGCG
TTGAAGGAGAGGAAAGGAGTACGGATGAACATGTTAAGGGAACTTCTGTGATTTCTACTAAGGGTGAGACAAGAGTAGAGAAAAGTTCTCCTATTTCACTAGTGAAGCTG
ACGCGAAGTGGTCTGGTTTTGTTTACCTTTACCAAGGATATCTCTCCTGATACTGTTTATATTGTCTCGGACATAATTCAGTCTCTGGAAGCAGGGATTTTGAAGTCCCC
TGCGAATCGATCTATAAGGGTTTTGGCTCGACTACTAGACCATGTGTATTTGCCATTCTGCATCGGAATGTCCAGAAGCTCCACCGATTCTATGAATTTGTTAAAATTTT
TCATGCCTTTGGGATTGCTTGATGAGGGCTCTTTTCTTCTTAGAGCCAAGGCCTCTAACGTTCCAGGAGATAATAATCATTTAATGGACATGAGACCTGTTCGGACGATG
ACCGCAAGCGCACGGCTCGGAAATGGGGTAGCGTCGCGACGCTACATGGCACAGCGTCGCGACGCTGTGACGTCATCGACTTGCCGGCCAAGAAATGGACAGCGTCGCGA
CGCTGTCCTTACAGCGTCTCGACGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTCATGGGAAGAGAAGAGCAAAGTGTTGTCTGCAAACTGAAGATGAGTGATATTGTGATCTCTAGAAGCAATTTCAACATGCAACCTAAACTACATAGTATTGCACA
TTATATTCAGTACTTCAGTAGTTCTACGCCAGAAACTTTGGAGACATCGGATGAAAATGAAACTTCTAAACGGAGGAAAATTTGTACAGAGGACATTGATCACAAAAGCG
TTGAAGGAGAGGAAAGGAGTACGGATGAACATGTTAAGGGAACTTCTGTGATTTCTACTAAGGGTGAGACAAGAGTAGAGAAAAGTTCTCCTATTTCACTAGTGAAGCTG
ACGCGAAGTGGTCTGGTTTTGTTTACCTTTACCAAGGATATCTCTCCTGATACTGTTTATATTGTCTCGGACATAATTCAGTCTCTGGAAGCAGGGATTTTGAAGTCCCC
TGCGAATCGATCTATAAGGGTTTTGGCTCGACTACTAGACCATGTGTATTTGCCATTCTGCATCGGAATGTCCAGAAGCTCCACCGATTCTATGAATTTGTTAAAATTTT
TCATGCCTTTGGGATTGCTTGATGAGGGCTCTTTTCTTCTTAGAGCCAAGGCCTCTAACGTTCCAGGAGATAATAATCATTTAATGGACATGAGACCTGTTCGGACGATG
ACCGCAAGCGCACGGCTCGGAAATGGGGTAGCGTCGCGACGCTACATGGCACAGCGTCGCGACGCTGTGACGTCATCGACTTGCCGGCCAAGAAATGGACAGCGTCGCGA
CGCTGTCCTTACAGCGTCTCGACGCTAG
Protein sequenceShow/hide protein sequence
MLMGREEQSVVCKLKMSDIVISRSNFNMQPKLHSIAHYIQYFSSSTPETLETSDENETSKRRKICTEDIDHKSVEGEERSTDEHVKGTSVISTKGETRVEKSSPISLVKL
TRSGLVLFTFTKDISPDTVYIVSDIIQSLEAGILKSPANRSIRVLARLLDHVYLPFCIGMSRSSTDSMNLLKFFMPLGLLDEGSFLLRAKASNVPGDNNHLMDMRPVRTM
TASARLGNGVASRRYMAQRRDAVTSSTCRPRNGQRRDAVLTASRR