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Spg005453 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg005453
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold7:26261886..26263683
RNA-Seq ExpressionSpg005453
SyntenySpg005453
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037514.1 reverse transcriptase [Cucumis melo var. makuwa]2.9e-1057.32Show/hide
Query:  QDEPEALFGMVGKRIQFSTTFMKHSPRGNRSGLQTRELAKT-----------------VEIELPVPDTLPTSTESSRSSSSS
        Q E EA  G VGK IQ+ TTFMK  PRGNR  LQTREL KT                 VEIELPVPDTLPTS ES  S+SS+
Subjt:  QDEPEALFGMVGKRIQFSTTFMKHSPRGNRSGLQTRELAKT-----------------VEIELPVPDTLPTSTESSRSSSSS

KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.4e-0946.46Show/hide
Query:  PRGNRSGLQTRELAKT-----------------VEIELPVPDTLPTSTESSRSSSSSTFQA----------GQQVSLEEDDVRWLHAIFRTKLAGGPRG
        PRGNR  LQT EL KT                 VEIELP+PDTLPTS ESS S+SS+  +           G    +  DDV WLHA+FR K  GGP G
Subjt:  PRGNRSGLQTRELAKT-----------------VEIELPVPDTLPTSTESSRSSSSSTFQA----------GQQVSLEEDDVRWLHAIFRTKLAGGPRG

TYJ96965.1 uncharacterized protein E5676_scaffold506G00070 [Cucumis melo var. makuwa]1.1e-1270.77Show/hide
Query:  QDEPEALFGMVGKRIQFSTTFMKHSPRGNRSGLQTRELAKTVEIELPVPDTLPTSTESSRSSSSS
        Q E EALFGMV K IQ+ TTFM   PRGNR   QT +L KTVEIELPVPDTLPTS ESS S+SS+
Subjt:  QDEPEALFGMVGKRIQFSTTFMKHSPRGNRSGLQTRELAKTVEIELPVPDTLPTSTESSRSSSSS

TYK01989.1 reverse transcriptase [Cucumis melo var. makuwa]2.9e-1057.32Show/hide
Query:  QDEPEALFGMVGKRIQFSTTFMKHSPRGNRSGLQTRELAKT-----------------VEIELPVPDTLPTSTESSRSSSSS
        Q E EA  G VGK IQ+ TTFMK  PRGNR  LQTREL KT                 VEIELPVPDTLPTS ES  S+SS+
Subjt:  QDEPEALFGMVGKRIQFSTTFMKHSPRGNRSGLQTRELAKT-----------------VEIELPVPDTLPTSTESSRSSSSS

TYK17971.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.4e-0946.46Show/hide
Query:  PRGNRSGLQTRELAKT-----------------VEIELPVPDTLPTSTESSRSSSSSTFQA----------GQQVSLEEDDVRWLHAIFRTKLAGGPRG
        PRGNR  LQT EL KT                 VEIELP+PDTLPTS ESS S+SS+  +           G    +  DDV WLHA+FR K  GGP G
Subjt:  PRGNRSGLQTRELAKT-----------------VEIELPVPDTLPTSTESSRSSSSSTFQA----------GQQVSLEEDDVRWLHAIFRTKLAGGPRG

TrEMBL top hitse value%identityAlignment
A0A5A7T223 Reverse transcriptase1.4e-1057.32Show/hide
Query:  QDEPEALFGMVGKRIQFSTTFMKHSPRGNRSGLQTRELAKT-----------------VEIELPVPDTLPTSTESSRSSSSS
        Q E EA  G VGK IQ+ TTFMK  PRGNR  LQTREL KT                 VEIELPVPDTLPTS ES  S+SS+
Subjt:  QDEPEALFGMVGKRIQFSTTFMKHSPRGNRSGLQTRELAKT-----------------VEIELPVPDTLPTSTESSRSSSSS

A0A5A7TKT0 Reverse transcriptase6.9e-1046.46Show/hide
Query:  PRGNRSGLQTRELAKT-----------------VEIELPVPDTLPTSTESSRSSSSSTFQA----------GQQVSLEEDDVRWLHAIFRTKLAGGPRG
        PRGNR  LQT EL KT                 VEIELP+PDTLPTS ESS S+SS+  +           G    +  DDV WLHA+FR K  GGP G
Subjt:  PRGNRSGLQTRELAKT-----------------VEIELPVPDTLPTSTESSRSSSSSTFQA----------GQQVSLEEDDVRWLHAIFRTKLAGGPRG

A0A5D3BET3 Uncharacterized protein5.1e-1370.77Show/hide
Query:  QDEPEALFGMVGKRIQFSTTFMKHSPRGNRSGLQTRELAKTVEIELPVPDTLPTSTESSRSSSSS
        Q E EALFGMV K IQ+ TTFM   PRGNR   QT +L KTVEIELPVPDTLPTS ESS S+SS+
Subjt:  QDEPEALFGMVGKRIQFSTTFMKHSPRGNRSGLQTRELAKTVEIELPVPDTLPTSTESSRSSSSS

A0A5D3BV68 Reverse transcriptase1.4e-1057.32Show/hide
Query:  QDEPEALFGMVGKRIQFSTTFMKHSPRGNRSGLQTRELAKT-----------------VEIELPVPDTLPTSTESSRSSSSS
        Q E EA  G VGK IQ+ TTFMK  PRGNR  LQTREL KT                 VEIELPVPDTLPTS ES  S+SS+
Subjt:  QDEPEALFGMVGKRIQFSTTFMKHSPRGNRSGLQTRELAKT-----------------VEIELPVPDTLPTSTESSRSSSSS

A0A5D3D150 Reverse transcriptase6.9e-1046.46Show/hide
Query:  PRGNRSGLQTRELAKT-----------------VEIELPVPDTLPTSTESSRSSSSSTFQA----------GQQVSLEEDDVRWLHAIFRTKLAGGPRG
        PRGNR  LQT EL KT                 VEIELP+PDTLPTS ESS S+SS+  +           G    +  DDV WLHA+FR K  GGP G
Subjt:  PRGNRSGLQTRELAKT-----------------VEIELPVPDTLPTSTESSRSSSSSTFQA----------GQQVSLEEDDVRWLHAIFRTKLAGGPRG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTTTGGAATGGAAAACAAAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTGTAGTTTTTCGAGCATTCTGGGGCGTACAAGATGAACCAGAAGC
TCTATTTGGTATGGTTGGAAAGCGTATTCAATTTTCTACAACTTTCATGAAGCATTCGCCAAGAGGAAATAGGTCTGGTCTACAAACCAGGGAACTAGCTAAGACTGTAG
AGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTACTGAAAGTTCCAGATCAAGCTCCAGTTCAACGTTCCAGGCGGGTCAACAGGTATCGTTAGAGGAGGACGAT
GTTCGTTGGCTTCACGCCATCTTCCGGACTAAACTAGCAGGTGGTCCGAGAGGG
mRNA sequenceShow/hide mRNA sequence
ATGGTTTTTGGAATGGAAAACAAAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTGTAGTTTTTCGAGCATTCTGGGGCGTACAAGATGAACCAGAAGC
TCTATTTGGTATGGTTGGAAAGCGTATTCAATTTTCTACAACTTTCATGAAGCATTCGCCAAGAGGAAATAGGTCTGGTCTACAAACCAGGGAACTAGCTAAGACTGTAG
AGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTACTGAAAGTTCCAGATCAAGCTCCAGTTCAACGTTCCAGGCGGGTCAACAGGTATCGTTAGAGGAGGACGAT
GTTCGTTGGCTTCACGCCATCTTCCGGACTAAACTAGCAGGTGGTCCGAGAGGG
Protein sequenceShow/hide protein sequence
MVFGMENKAQDFRAKQEDLWFSVVFRAFWGVQDEPEALFGMVGKRIQFSTTFMKHSPRGNRSGLQTRELAKTVEIELPVPDTLPTSTESSRSSSSSTFQAGQQVSLEEDD
VRWLHAIFRTKLAGGPRG