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Spg005457 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg005457
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold7:27268748..27275531
RNA-Seq ExpressionSpg005457
SyntenySpg005457
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037514.1 reverse transcriptase [Cucumis melo var. makuwa]3.1e-1759Show/hide
Query:  QVESEALFGMVGKSIQFPTTFMKNSCAKNDVKPRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI
        QVESEA  G VGK IQ+PTTFMK       + PRGNR SLQTR+L KT                 VEIELPVPDTLPTS ES  S+SSTW+ELY ESVH+
Subjt:  QVESEALFGMVGKSIQFPTTFMKNSCAKNDVKPRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]1.8e-1277.36Show/hide
Query:  VKPRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI
        + PRGNR +L T KL KTVEIELPVPDTLPTSAESS+S+SSTW+ELY ESVH+
Subjt:  VKPRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI

KAA0062263.1 hypothetical protein E6C27_scaffold679G00320 [Cucumis melo var. makuwa]3.7e-1857.84Show/hide
Query:  QVESEALFGMVGKSIQFPTTFMK-------------------NSCAKNDVKPRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESV
        QV+SEA+F MV K IQ+PTTFMK                    S  +N   PRGNR SLQ  KL KTVEIELP+PDTLPTS+ESS+S+SSTW+ELY ESV
Subjt:  QVESEALFGMVGKSIQFPTTFMK-------------------NSCAKNDVKPRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESV

Query:  HI
        H+
Subjt:  HI

TYJ96965.1 uncharacterized protein E5676_scaffold506G00070 [Cucumis melo var. makuwa]2.7e-2173.49Show/hide
Query:  QVESEALFGMVGKSIQFPTTFMKNSCAKNDVKPRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI
        QVESEALFGMV K IQ+PTTFM       ++ PRGNR S QT KL KTVEIELPVPDTLPTSAESS S+SSTW+ELY ESVH+
Subjt:  QVESEALFGMVGKSIQFPTTFMKNSCAKNDVKPRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI

TYK01989.1 reverse transcriptase [Cucumis melo var. makuwa]3.1e-1759Show/hide
Query:  QVESEALFGMVGKSIQFPTTFMKNSCAKNDVKPRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI
        QVESEA  G VGK IQ+PTTFMK       + PRGNR SLQTR+L KT                 VEIELPVPDTLPTS ES  S+SSTW+ELY ESVH+
Subjt:  QVESEALFGMVGKSIQFPTTFMKNSCAKNDVKPRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI

TrEMBL top hitse value%identityAlignment
A0A5A7T223 Reverse transcriptase1.5e-1759Show/hide
Query:  QVESEALFGMVGKSIQFPTTFMKNSCAKNDVKPRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI
        QVESEA  G VGK IQ+PTTFMK       + PRGNR SLQTR+L KT                 VEIELPVPDTLPTS ES  S+SSTW+ELY ESVH+
Subjt:  QVESEALFGMVGKSIQFPTTFMKNSCAKNDVKPRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI

A0A5A7UAH6 CCHC-type domain-containing protein8.5e-1377.36Show/hide
Query:  VKPRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI
        + PRGNR +L T KL KTVEIELPVPDTLPTSAESS+S+SSTW+ELY ESVH+
Subjt:  VKPRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI

A0A5A7V2F2 Uncharacterized protein1.8e-1857.84Show/hide
Query:  QVESEALFGMVGKSIQFPTTFMK-------------------NSCAKNDVKPRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESV
        QV+SEA+F MV K IQ+PTTFMK                    S  +N   PRGNR SLQ  KL KTVEIELP+PDTLPTS+ESS+S+SSTW+ELY ESV
Subjt:  QVESEALFGMVGKSIQFPTTFMK-------------------NSCAKNDVKPRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESV

Query:  HI
        H+
Subjt:  HI

A0A5D3BET3 Uncharacterized protein1.3e-2173.49Show/hide
Query:  QVESEALFGMVGKSIQFPTTFMKNSCAKNDVKPRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI
        QVESEALFGMV K IQ+PTTFM       ++ PRGNR S QT KL KTVEIELPVPDTLPTSAESS S+SSTW+ELY ESVH+
Subjt:  QVESEALFGMVGKSIQFPTTFMKNSCAKNDVKPRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI

A0A5D3BV68 Reverse transcriptase1.5e-1759Show/hide
Query:  QVESEALFGMVGKSIQFPTTFMKNSCAKNDVKPRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI
        QVESEA  G VGK IQ+PTTFMK       + PRGNR SLQTR+L KT                 VEIELPVPDTLPTS ES  S+SSTW+ELY ESVH+
Subjt:  QVESEALFGMVGKSIQFPTTFMKNSCAKNDVKPRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGTCACAGCGTTGCGACGCTAAACAGAGGAATCTGGAAAATTCCCAAAAATGCGACCGCATTTCTGGCAACGCAAAAATTGAAGAGATAGGGAATGGGAAGGGAAT
GCTTGAAGGATCAAGCTCTAGAGAGATCTTTGAAGGTGAAGCAAATCCATGCACCTTGGAGTCTCAAGATGAAGGACACATGGTGAAGAGTCAAGCAGTAGTGGATTCTA
GGTGTTCATCGTTACAGTCGCCGCCGCCTTTCGCCTCTTGCCGCCGTTGCCTCTTGCCGCACGCCACCGTCGACAACCACCCACGCCGCCGCAAGCCTTTGGTATGCCTT
CTTCTTTCTCTTTCTCTCTCATCTCCTAGCCCTCACTCTTTCTCTCTCGCCTTCAGCGTCGTCGCTGCCTCTTCGCTCCGATCGTTAGTATCGCCGCCGCCCCAGATCTG
CCACTGCCGTCGCGTAGCATCTCCGATCTACTACCGTGCCGTCACACACACACAAGCTCGCGACGAGAATCCCGAAAACCCACGCATTCAGCTCATTCCAACATGTTTTC
TGTCGCCGCCGTTGTCGAGTGTTGGTTGCAGTAGCCTTAGTTTCGTGTTAGGTGTCGTCGGGCACGTTCTTGACTTACAATTTGCTGTCCAGCAGAGGGTTCGTCACTTT
TGGGAAATAGCTCAAGCAAAGGCAGCCATAGCAGAAGCTGAGTTCAACCTGTCTACCTCTGGTTTTTCTTTCGGTTTGAGCTACACAGAAAGAACTAAGAGAGCACAGGA
TTTTCGAGCAAACCAGGAGGATCTCTGGTTTTCTCGTGTTTTTCGAGCATTCTGGGGTGTACAAGTTGAGTCAGAAGCTCTATTTGGTATGGTTGGAAAGAGTATTCAAT
TTCCTACAACTTTCATGAAGAATTCGTGTGCCAAAAATGACGTGAAGCCAAGAGGAAATAGGTCGAGTCTACAAACCAGGAAACTAGCTAAGACAGTAGAGATCGAGCTC
CCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTCCATATTGTAAATGTTTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGACGTCACAGCGTTGCGACGCTAAACAGAGGAATCTGGAAAATTCCCAAAAATGCGACCGCATTTCTGGCAACGCAAAAATTGAAGAGATAGGGAATGGGAAGGGAAT
GCTTGAAGGATCAAGCTCTAGAGAGATCTTTGAAGGTGAAGCAAATCCATGCACCTTGGAGTCTCAAGATGAAGGACACATGGTGAAGAGTCAAGCAGTAGTGGATTCTA
GGTGTTCATCGTTACAGTCGCCGCCGCCTTTCGCCTCTTGCCGCCGTTGCCTCTTGCCGCACGCCACCGTCGACAACCACCCACGCCGCCGCAAGCCTTTGGTATGCCTT
CTTCTTTCTCTTTCTCTCTCATCTCCTAGCCCTCACTCTTTCTCTCTCGCCTTCAGCGTCGTCGCTGCCTCTTCGCTCCGATCGTTAGTATCGCCGCCGCCCCAGATCTG
CCACTGCCGTCGCGTAGCATCTCCGATCTACTACCGTGCCGTCACACACACACAAGCTCGCGACGAGAATCCCGAAAACCCACGCATTCAGCTCATTCCAACATGTTTTC
TGTCGCCGCCGTTGTCGAGTGTTGGTTGCAGTAGCCTTAGTTTCGTGTTAGGTGTCGTCGGGCACGTTCTTGACTTACAATTTGCTGTCCAGCAGAGGGTTCGTCACTTT
TGGGAAATAGCTCAAGCAAAGGCAGCCATAGCAGAAGCTGAGTTCAACCTGTCTACCTCTGGTTTTTCTTTCGGTTTGAGCTACACAGAAAGAACTAAGAGAGCACAGGA
TTTTCGAGCAAACCAGGAGGATCTCTGGTTTTCTCGTGTTTTTCGAGCATTCTGGGGTGTACAAGTTGAGTCAGAAGCTCTATTTGGTATGGTTGGAAAGAGTATTCAAT
TTCCTACAACTTTCATGAAGAATTCGTGTGCCAAAAATGACGTGAAGCCAAGAGGAAATAGGTCGAGTCTACAAACCAGGAAACTAGCTAAGACAGTAGAGATCGAGCTC
CCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTCCATATTGTAAATGTTTTGTAA
Protein sequenceShow/hide protein sequence
MTSQRCDAKQRNLENSQKCDRISGNAKIEEIGNGKGMLEGSSSREIFEGEANPCTLESQDEGHMVKSQAVVDSRCSSLQSPPPFASCRRCLLPHATVDNHPRRRKPLVCL
LLSLSLSSPSPHSFSLAFSVVAASSLRSLVSPPPQICHCRRVASPIYYRAVTHTQARDENPENPRIQLIPTCFLSPPLSSVGCSSLSFVLGVVGHVLDLQFAVQQRVRHF
WEIAQAKAAIAEAEFNLSTSGFSFGLSYTERTKRAQDFRANQEDLWFSRVFRAFWGVQVESEALFGMVGKSIQFPTTFMKNSCAKNDVKPRGNRSSLQTRKLAKTVEIEL
PVPDTLPTSAESSRSSSSTWVELYIESVHIVNVL