; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg005463 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg005463
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTHUMP domain-containing protein
Genome locationscaffold7:26677382..26678323
RNA-Seq ExpressionSpg005463
SyntenySpg005463
Gene Ontology termsGO:0006400 - tRNA modification (biological process)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR040183 - THUMP domain-containing protein 1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022158307.1 uncharacterized protein LOC111024819 [Momordica charantia]1.3e-3479.59Show/hide
Query:  MAEKEEHDNGCQPKSVVEASKLTDNVAGSEGKTMTPWEQHSAVISIPRFDYNAPSALLHHCHSGFLITCTIKREKSATKEAISILEKVLFLYFVKSSP
        MAEKE ++NG QPK V EASK T+NVA + GKTMTPWEQHS VISIPRFDYNAPSALLHHCHSGFLITC+IKREKSATKEAISILEK +  YF  S+P
Subjt:  MAEKEEHDNGCQPKSVVEASKLTDNVAGSEGKTMTPWEQHSAVISIPRFDYNAPSALLHHCHSGFLITCTIKREKSATKEAISILEKVLFLYFVKSSP

XP_022994263.1 uncharacterized protein LOC111490047 isoform X1 [Cucurbita maxima]1.9e-2876.53Show/hide
Query:  MAEKEEHDNGCQPKSVVEASKLTDNVAGSEGKTMTPWEQHSAVISIPRFDYNAPSALLHHCHSGFLITCTIKREKSATKEAISILEKVLFLYFVKSSP
        MAEKE+   GC+PK V EASK  +NVA +E KTMTPWEQHSAVISIPRFDYNAPSALLHH  SGFLITC IKREKSATKEAISILEK    YF  S+P
Subjt:  MAEKEEHDNGCQPKSVVEASKLTDNVAGSEGKTMTPWEQHSAVISIPRFDYNAPSALLHHCHSGFLITCTIKREKSATKEAISILEKVLFLYFVKSSP

XP_023553252.1 uncharacterized protein LOC111810722 isoform X1 [Cucurbita pepo subsp. pepo]6.4e-2976.53Show/hide
Query:  MAEKEEHDNGCQPKSVVEASKLTDNVAGSEGKTMTPWEQHSAVISIPRFDYNAPSALLHHCHSGFLITCTIKREKSATKEAISILEKVLFLYFVKSSP
        MAEKE+  NGC+PK   EASK  +NVA +E KTMTPWEQHSAVISIPRFDYNAPSALLHH  SGFLITC IKREKSATKEAISILEK    YF  S+P
Subjt:  MAEKEEHDNGCQPKSVVEASKLTDNVAGSEGKTMTPWEQHSAVISIPRFDYNAPSALLHHCHSGFLITCTIKREKSATKEAISILEKVLFLYFVKSSP

XP_023553260.1 uncharacterized protein LOC111810722 isoform X2 [Cucurbita pepo subsp. pepo]6.4e-2976.53Show/hide
Query:  MAEKEEHDNGCQPKSVVEASKLTDNVAGSEGKTMTPWEQHSAVISIPRFDYNAPSALLHHCHSGFLITCTIKREKSATKEAISILEKVLFLYFVKSSP
        MAEKE+  NGC+PK   EASK  +NVA +E KTMTPWEQHSAVISIPRFDYNAPSALLHH  SGFLITC IKREKSATKEAISILEK    YF  S+P
Subjt:  MAEKEEHDNGCQPKSVVEASKLTDNVAGSEGKTMTPWEQHSAVISIPRFDYNAPSALLHHCHSGFLITCTIKREKSATKEAISILEKVLFLYFVKSSP

XP_038892499.1 uncharacterized protein LOC120081569 isoform X1 [Benincasa hispida]9.0e-3176.53Show/hide
Query:  MAEKEEHDNGCQPKSVVEASKLTDNVAGSEGKTMTPWEQHSAVISIPRFDYNAPSALLHHCHSGFLITCTIKREKSATKEAISILEKVLFLYFVKSSP
        MAEKEE  NGC  K V EASK T+NV  +E KTMTPWEQHSAVISIPRFDYNAPSALL  C SGFLITC+IKREKSATKEAISILEK +  YF  S P
Subjt:  MAEKEEHDNGCQPKSVVEASKLTDNVAGSEGKTMTPWEQHSAVISIPRFDYNAPSALLHHCHSGFLITCTIKREKSATKEAISILEKVLFLYFVKSSP

TrEMBL top hitse value%identityAlignment
A0A0A0KQX3 THUMP domain-containing protein1.2e-2877.01Show/hide
Query:  MAEKEEHDNGCQPKSVVEASKLTDNVAGSEGKTMTPWEQHSAVISIPRFDYNAPSALLHHCHSGFLITCTIKREKSATKEAISILEK
        MAE EE +NGC  K   EA K  +NVA +E K MTPWEQHSAVISIPRFDYNAPSALLH C +GFLITCTIKREKSATKEAISIL+K
Subjt:  MAEKEEHDNGCQPKSVVEASKLTDNVAGSEGKTMTPWEQHSAVISIPRFDYNAPSALLHHCHSGFLITCTIKREKSATKEAISILEK

A0A1S3CD85 uncharacterized protein LOC1034990953.6e-2577.11Show/hide
Query:  KSVVEASKLTDNVAGSEGKTMTPWEQHSAVISIPRFDYNAPSALLHHCHSGFLITCTIKREKSATKEAISILEKVLFLYFVKS
        K   EASK  +NVA +E KTMTPWEQHSAVIS+PRFDYNAPSALLH C SGFLITCTIKREKSATKEAI ILEK +  YF  S
Subjt:  KSVVEASKLTDNVAGSEGKTMTPWEQHSAVISIPRFDYNAPSALLHHCHSGFLITCTIKREKSATKEAISILEKVLFLYFVKS

A0A6J1DWW8 uncharacterized protein LOC1110248196.5e-3579.59Show/hide
Query:  MAEKEEHDNGCQPKSVVEASKLTDNVAGSEGKTMTPWEQHSAVISIPRFDYNAPSALLHHCHSGFLITCTIKREKSATKEAISILEKVLFLYFVKSSP
        MAEKE ++NG QPK V EASK T+NVA + GKTMTPWEQHS VISIPRFDYNAPSALLHHCHSGFLITC+IKREKSATKEAISILEK +  YF  S+P
Subjt:  MAEKEEHDNGCQPKSVVEASKLTDNVAGSEGKTMTPWEQHSAVISIPRFDYNAPSALLHHCHSGFLITCTIKREKSATKEAISILEKVLFLYFVKSSP

A0A6J1EPS0 uncharacterized protein LOC111436464 isoform X19.1e-2976.53Show/hide
Query:  MAEKEEHDNGCQPKSVVEASKLTDNVAGSEGKTMTPWEQHSAVISIPRFDYNAPSALLHHCHSGFLITCTIKREKSATKEAISILEKVLFLYFVKSSP
        MAEKE+   GC+PK V EASK  +NVA +E KTMTPWEQHSAVISIPRFDYNAPSALLHH  SGFLITC IKREKSATKEAISILEK    YF  S+P
Subjt:  MAEKEEHDNGCQPKSVVEASKLTDNVAGSEGKTMTPWEQHSAVISIPRFDYNAPSALLHHCHSGFLITCTIKREKSATKEAISILEKVLFLYFVKSSP

A0A6J1K4P7 uncharacterized protein LOC111490047 isoform X19.1e-2976.53Show/hide
Query:  MAEKEEHDNGCQPKSVVEASKLTDNVAGSEGKTMTPWEQHSAVISIPRFDYNAPSALLHHCHSGFLITCTIKREKSATKEAISILEKVLFLYFVKSSP
        MAEKE+   GC+PK V EASK  +NVA +E KTMTPWEQHSAVISIPRFDYNAPSALLHH  SGFLITC IKREKSATKEAISILEK    YF  S+P
Subjt:  MAEKEEHDNGCQPKSVVEASKLTDNVAGSEGKTMTPWEQHSAVISIPRFDYNAPSALLHHCHSGFLITCTIKREKSATKEAISILEKVLFLYFVKSSP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G09290.1 unknown protein2.5e-2358.43Show/hide
Query:  MAEKEEHDNGCQPKSVVEASKLTDNVAGSEGKTMTPWEQHSAVISIPRFDYNAPSALLHHCHSGFLITCTIKREKSATKEAISILEKVL
        MA  EE D+    +++ E +       G E +T+TPWEQHS++ISIPRFDY APS+LLHH HSGFL+TC IKREKSATKE +SIL K +
Subjt:  MAEKEEHDNGCQPKSVVEASKLTDNVAGSEGKTMTPWEQHSAVISIPRFDYNAPSALLHHCHSGFLITCTIKREKSATKEAISILEKVL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGAGAAAGAAGAACACGACAATGGCTGCCAGCCAAAATCTGTAGTAGAAGCCTCGAAATTAACAGACAATGTCGCTGGAAGCGAAGGGAAAACAATGACGCCATG
GGAGCAGCACTCTGCTGTCATAAGCATCCCTCGCTTCGACTACAACGCACCATCTGCTCTTCTTCACCATTGCCATTCTGGATTCCTCATCACATGCACAATCAAGAGGG
AGAAGAGTGCCACAAAAGAAGCTATCTCCATCCTTGAAAAGGTTCTGTTTTTGTACTTTGTCAAATCTTCTCCATGTCATGCATTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAGAGAAAGAAGAACACGACAATGGCTGCCAGCCAAAATCTGTAGTAGAAGCCTCGAAATTAACAGACAATGTCGCTGGAAGCGAAGGGAAAACAATGACGCCATG
GGAGCAGCACTCTGCTGTCATAAGCATCCCTCGCTTCGACTACAACGCACCATCTGCTCTTCTTCACCATTGCCATTCTGGATTCCTCATCACATGCACAATCAAGAGGG
AGAAGAGTGCCACAAAAGAAGCTATCTCCATCCTTGAAAAGGTTCTGTTTTTGTACTTTGTCAAATCTTCTCCATGTCATGCATTCTGA
Protein sequenceShow/hide protein sequence
MAEKEEHDNGCQPKSVVEASKLTDNVAGSEGKTMTPWEQHSAVISIPRFDYNAPSALLHHCHSGFLITCTIKREKSATKEAISILEKVLFLYFVKSSPCHAF