; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg005468 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg005468
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold7:25338087..25341510
RNA-Seq ExpressionSpg005468
SyntenySpg005468
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_015382226.1 uncharacterized protein LOC107175329, partial [Citrus sinensis]1.1e-1729.3Show/hide
Query:  GVQYPKR------FEEGWAKYDDCKKIVEHIWRKRGH-EDGRPIWVMTNKC---LRKRSAWSRNKYEGSIRGAIARKENEIKDLRNCKDQNSLKD-MEQK
        G +Y +R      +E+ W+ Y+ C++IV+  W+K+    +  P+ +   K    L +   WS+ ++ G  +  + + +N++K +R+        D +++ 
Subjt:  GVQYPKR------FEEGWAKYDDCKKIVEHIWRKRGH-EDGRPIWVMTNKC---LRKRSAWSRNKYEGSIRGAIARKENEIKDLRNCKDQNSLKD-MEQK

Query:  EKYLENLLEDDEIYWRQRAREEWLNWRDRNTKWFHLKASTRWKANRIRGLTDEMGGWIEDNE----------------GSSNEQLVKASFMDYDARV--I
        E  ++N+L+D+EI+W+QR+R +WL   D+NTK+FH KAS R K NRI G+ DE G W ED++                 +   + + A+F D  A+V   
Subjt:  EKYLENLLEDDEIYWRQRAREEWLNWRDRNTKWFHLKASTRWKANRIRGLTDEMGGWIEDNE----------------GSSNEQLVKASFMDYDARV--I

Query:  LNIPINPLIREDEII
        +N  ++    E+EI+
Subjt:  LNIPINPLIREDEII

XP_015382878.1 uncharacterized protein LOC107175701 [Citrus sinensis]2.6e-1934.01Show/hide
Query:  ASDHRPLLAEWTKEQVIQRQNGVQYPK------RFEEGWAKYDDCKKIVEHIWRKRGHEDGRPIWVMTN--KCLRKRS--------AWSRNKYEGSIRGA
        +SDH P+L E     V+++  G +Y +       +E+ W+ Y+ C++IV+H W+     DG   W   N  +  R++S         WS+ ++ G  +  
Subjt:  ASDHRPLLAEWTKEQVIQRQNGVQYPK------RFEEGWAKYDDCKKIVEHIWRKRGHEDGRPIWVMTN--KCLRKRS--------AWSRNKYEGSIRGA

Query:  IARKENEIKDLRN-CKDQNSLKDMEQKEKYLENLLEDDEIYWRQRAREEWLNWRDRNTKWFHLKASTRWKANRIRGLTDEMGGWIEDNEGSSNEQLV
        + + +N++K+++N     ++ ++M++ E  ++N+L D+EI+W+QR+R +WL   DRN K+FH KAS + K NRI GL DE G WIE  E +  EQL+
Subjt:  IARKENEIKDLRN-CKDQNSLKDMEQKEKYLENLLEDDEIYWRQRAREEWLNWRDRNTKWFHLKASTRWKANRIRGLTDEMGGWIEDNEGSSNEQLV

XP_015383166.1 uncharacterized protein LOC107175882 [Citrus sinensis]5.3e-1730.95Show/hide
Query:  MASDHRPLLAEWTKEQVIQRQNGVQYPKR------FEEGWAKYDDCKKIVEHIWRKRGH-EDGRPI---WVMTNKCLRKRSAWSRNKYEGSIRGAIARKE
        ++SDH P+L E     V +R   V+Y ++      +E+ W+ YD CK I +  W  +G+ + G P+          + K   WS  ++ G  +      E
Subjt:  MASDHRPLLAEWTKEQVIQRQNGVQYPKR------FEEGWAKYDDCKKIVEHIWRKRGH-EDGRPI---WVMTNKCLRKRSAWSRNKYEGSIRGAIARKE

Query:  NEIKDLRNCKDQNSLKDMEQKEKYLENLLEDDEIYWRQRAREEWLNWRDRNTKWFHLKASTRWKANRIRGLTDEMGGWIEDNEGSSNEQLVKASFMDYDA
           +  +N +   S  ++++ E+ + NLL D EIYW+QR R +WL   D+NTK+FHLKAS R + N+I G+ D+ G W ++      E  V+A F +Y  
Subjt:  NEIKDLRNCKDQNSLKDMEQKEKYLENLLEDDEIYWRQRAREEWLNWRDRNTKWFHLKASTRWKANRIRGLTDEMGGWIEDNEGSSNEQLVKASFMDYDA

Query:  RVILNIPINP
         +  +    P
Subjt:  RVILNIPINP

XP_024037590.1 uncharacterized protein LOC112097210 [Citrus clementina]1.4e-2033.16Show/hide
Query:  SDHRPLLAEWTKEQVIQRQNGVQYPKRF-EEGWAKYDDCKKIVEHIWRKRGH-EDGRPIWVM---TNKCLRKRSAWSRNKYEGSIRGAIARKENEIKDLR
        SDH P++ E  +            P+ F E+ W+ Y+ CK IV+  W K G    G P+ +    +N CL +   WSRN+++G        K+   +   
Subjt:  SDHRPLLAEWTKEQVIQRQNGVQYPKRF-EEGWAKYDDCKKIVEHIWRKRGH-EDGRPIWVM---TNKCLRKRSAWSRNKYEGSIRGAIARKENEIKDLR

Query:  NCKDQNSLKDMEQKEKYLENLLEDDEIYWRQRAREEWLNWRDRNTKWFHLKASTRWKANRIRGLTDEMGGWIEDNEGSSNEQLVKASFMDYDA
        N   +  + +++  E+ +E +L D+E+YW+QR+R +WL   D+NTK+FH KAS+R + NRI G+ D+   W++D EG      V+  F +Y A
Subjt:  NCKDQNSLKDMEQKEKYLENLLEDDEIYWRQRAREEWLNWRDRNTKWFHLKASTRWKANRIRGLTDEMGGWIEDNEGSSNEQLVKASFMDYDA

XP_024038343.1 uncharacterized protein LOC112097373 [Citrus clementina]5.3e-1733.87Show/hide
Query:  SDHRPLLAEWTKEQVIQRQNGVQYPKR------FEEGWAKYDDCKKIVEHIWRKRGHEDG-RPIWV---MTNKCLRKRSAWSRNKYEGSIRGAIARKENE
        SDH P++ E     V  R +G+ + +R      +E+ W+ YD CK+I+E  W  +G  +   P+ +   ++   + +   WS+ ++ G  +  + +  N+
Subjt:  SDHRPLLAEWTKEQVIQRQNGVQYPKR------FEEGWAKYDDCKKIVEHIWRKRGHEDG-RPIWV---MTNKCLRKRSAWSRNKYEGSIRGAIARKENE

Query:  IKDLRNCKDQ----NSLKDMEQKEKYLENLLEDDEIYWRQRAREEWLNWRDRNTKWFHLKASTRWKANRIRGLTDEMGGWIEDNEG
        ++ L+  + Q    N +K++E++ +Y   +L DDEIYW+QR+R +WL   D+NTK+FH KAS+R K NRI G+ +  G WIE+ EG
Subjt:  IKDLRNCKDQ----NSLKDMEQKEKYLENLLEDDEIYWRQRAREEWLNWRDRNTKWFHLKASTRWKANRIRGLTDEMGGWIEDNEG

TrEMBL top hitse value%identityAlignment
A0A803P3X4 Uncharacterized protein1.5e-1731.3Show/hide
Query:  FEEGWAKYDDCKKIVEHIWRKRGHEDGRP--IWVMTNKCLRKRSAWSRNKYEGSIRGAIARKENEIKDLRNCKDQNSLKDMEQKEKYLENLLEDDEIYWR
        FEE W + ++C +IV+ +W K     GRP       NKC +    W++ K  G +   I + +  + +L   +     + +++ E  L  LLE DE Y R
Subjt:  FEEGWAKYDDCKKIVEHIWRKRGHEDGRP--IWVMTNKCLRKRSAWSRNKYEGSIRGAIARKENEIKDLRNCKDQNSLKDMEQKEKYLENLLEDDEIYWR

Query:  QRAREEWLNWRDRNTKWFHLKASTRWKANRIRGLTDEMGGWIEDNEGSSNEQLVKASFMDYDARVILNIPINPLIREDEIIWDLDPRGVFFVKSAYRLRV
        QR+R  WL W DRNTK+FH KAS+R K N I+GL D MG W +D++G     LV     DY  R+  +   N  I E E++  + P+    +     + +
Subjt:  QRAREEWLNWRDRNTKWFHLKASTRWKANRIRGLTDEMGGWIEDNEGSSNEQLVKASFMDYDARVILNIPINPLIREDEIIWDLDPRGVFFVKSAYRLRV

Query:  QLQNNA-ATSPSNYIRICGKPQFTYVGSSDFLEKFWGRNNEDRIEI
          ++   A    N  +  G      +    F +KFW +  ED I +
Subjt:  QLQNNA-ATSPSNYIRICGKPQFTYVGSSDFLEKFWGRNNEDRIEI

A0A803PI64 Uncharacterized protein4.4e-1734.95Show/hide
Query:  SDHRPLLAEW--TKEQVIQRQNGVQYPKRFEEGWAKYDDCKKIVEHIWRKRGHE-DGRPIWVMTNKCLRKRSAWSRNKYEGSIRGAIARKENEIKDLRNC
        SDH+PL+ +     ++  + +N  +    FEE W + D CK+IVE  WR+      G      T +  R   +W+R K +  +   I + +  + +L + 
Subjt:  SDHRPLLAEW--TKEQVIQRQNGVQYPKRFEEGWAKYDDCKKIVEHIWRKRGHE-DGRPIWVMTNKCLRKRSAWSRNKYEGSIRGAIARKENEIKDLRNC

Query:  KDQNSLKDMEQKEKYLENLLEDDEIYWRQRAREEWLNWRDRNTKWFHLKASTRWKANRIRGLTDEMGGWIEDNEGSSNEQLVKASF
         D  +  ++++ EK L  +LE DE YWRQR+R  WL W D NTK+FH KAS R K N I+GL D++G W   +E    ++LV+  F
Subjt:  KDQNSLKDMEQKEKYLENLLEDDEIYWRQRAREEWLNWRDRNTKWFHLKASTRWKANRIRGLTDEMGGWIEDNEGSSNEQLVKASF

A0A803PV25 Uncharacterized protein2.3e-1832.13Show/hide
Query:  SDHRPLLAEWTKEQVIQRQNGVQYPK-------RFEEGWAKYDDCKKIVEHIWRKRGHEDGR--PIWVMTNKCLRKRSAWSRNKYEGSIRGAIARKENEI
        SDHR L+ +     +  R +G +  K        FEE W + ++C +IV+ +W +  +  GR        NKC +    W+R K +  +   + + +  +
Subjt:  SDHRPLLAEWTKEQVIQRQNGVQYPK-------RFEEGWAKYDDCKKIVEHIWRKRGHEDGR--PIWVMTNKCLRKRSAWSRNKYEGSIRGAIARKENEI

Query:  KDLRNCKDQNSLKDMEQKEKYLENLLEDDEIYWRQRAREEWLNWRDRNTKWFHLKASTRWKANRIRGLTDEMGGWIEDNEGSSNEQLVKASFMDYDARVI
         +L   +     + ++Q E  L  LLE DE YWRQR+R  WL W DRNTK+FH KAS R K N I+GL D MG W +D      + LV     DY  ++ 
Subjt:  KDLRNCKDQNSLKDMEQKEKYLENLLEDDEIYWRQRAREEWLNWRDRNTKWFHLKASTRWKANRIRGLTDEMGGWIEDNEGSSNEQLVKASFMDYDARVI

Query:  LNIPINPLIREDEIIWDLDPR
         +  IN  +  +E++  + P+
Subjt:  LNIPINPLIREDEIIWDLDPR

A0A803PWX1 Uncharacterized protein8.0e-1936.16Show/hide
Query:  SDHR------PLLAEWTKEQVIQRQNGVQYPKRFEEGWAKYDDCKKIVEHIWRKRGHEDGRPI--WVMTNKCLRKRSAWSRNKYEGSIRGAIARKENEIK
        SDHR      P+  +  K    +R+N       FEE W + ++C +I++++W++R    GRP+      NKC +    W++ K +  +   IA+ +  + 
Subjt:  SDHR------PLLAEWTKEQVIQRQNGVQYPKRFEEGWAKYDDCKKIVEHIWRKRGHEDGRPI--WVMTNKCLRKRSAWSRNKYEGSIRGAIARKENEIK

Query:  DLRNCKDQNSLKDMEQKEKYLENLLEDDEIYWRQRAREEWLNWRDRNTKWFHLKASTRWKANRIRGLTDEMGGWIED
        +L   +     + ++  E  L  LLE DE YWRQR+R  WL W DRNTK+FH KAS+R K N I+GL D+MG W +D
Subjt:  DLRNCKDQNSLKDMEQKEKYLENLLEDDEIYWRQRAREEWLNWRDRNTKWFHLKASTRWKANRIRGLTDEMGGWIED

A0A803QG78 Uncharacterized protein6.8e-1831.96Show/hide
Query:  ASDHRPLLAEWTKEQVIQRQNGVQYPKRFEEGWAKYDDCKKIVEHIWRKRGHEDG-RPIWVMTNKCLRKRSAWSRNKYEGSIRGAIARKENEIKDLRNC-
        +SDHR + A  T      +Q   +   RFE+ W    +CK ++ + W    H D  + + +  + C      W ++KY GS++  IA  +  +  L N  
Subjt:  ASDHRPLLAEWTKEQVIQRQNGVQYPKRFEEGWAKYDDCKKIVEHIWRKRGHEDG-RPIWVMTNKCLRKRSAWSRNKYEGSIRGAIARKENEIKDLRNC-

Query:  -KDQNSLKDMEQKEKYLENLLEDDEIYWRQRAREEWLNWRDRNTKWFHLKASTRWKANRIRGLTDEMGGWIEDNEGSSNEQLVKASFMDYDARV
         + Q+++ ++++ E  L++LLE +EIYW+QR+R +WLN  DRNTK+FH KAS R   N+I+ L  E G  +       ++  + A+  DY A +
Subjt:  -KDQNSLKDMEQKEKYLENLLEDDEIYWRQRAREEWLNWRDRNTKWFHLKASTRWKANRIRGLTDEMGGWIEDNEGSSNEQLVKASFMDYDARV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCTGATCACCGCCCTTTGTTGGCAGAATGGACAAAAGAGCAAGTTATTCAGAGGCAGAACGGGGTTCAGTATCCTAAAAGATTCGAGGAAGGTTGGGCCAAATA
TGATGATTGCAAAAAGATAGTTGAGCACATCTGGAGAAAAAGGGGCCATGAGGATGGGCGTCCAATCTGGGTGATGACCAATAAATGTCTACGAAAACGTTCAGCTTGGA
GCAGAAACAAATACGAGGGGTCCATTAGAGGTGCTATAGCGAGAAAGGAGAATGAAATAAAGGATCTGAGAAATTGTAAAGATCAAAATAGCCTAAAGGACATGGAACAA
AAAGAAAAATATCTTGAAAATTTATTGGAGGATGATGAGATTTATTGGCGGCAAAGGGCTAGAGAAGAGTGGCTTAATTGGAGGGATAGAAATACCAAATGGTTTCATTT
AAAGGCATCTACAAGATGGAAAGCGAACAGAATTCGCGGTCTTACGGATGAGATGGGAGGATGGATTGAGGACAATGAAGGGAGTTCGAATGAGCAATTAGTGAAAGCCT
CCTTCATGGACTATGATGCTAGGGTCATTTTGAATATTCCCATTAATCCTTTGATTAGGGAGGATGAGATCATTTGGGATTTAGACCCTAGAGGGGTTTTCTTTGTTAAG
AGTGCATATAGGCTGAGAGTTCAGCTCCAAAACAATGCGGCAACGTCACCATCAAACTACATTCGAATATGCGGGAAACCACAGTTCACTTATGTTGGGAGTAGTGATTT
TCTGGAAAAGTTTTGGGGGCGCAACAATGAAGATAGGATCGAGATTGGAAATTTATGCAAGAGCCTCGTTATATGTCGGCAGATTTGGGAGCATAGAAACGAGATTTACC
AGTGCAAGGCTAAATCTGATTTTGACAATTTGAAAATCAGAATCCAGAAGTACCTGACAGAATTTTCAATTCCGATTGAAGAAGATGAGCACCTCAGGCAGGGTAGGAGT
CAAATACCGGACGGAAGCTTCTCGAGTCATATGGAATCGATCCAGAACCTGCAAGTGGGCGATTCAGCTCCCCAAAACCCTCGAATACCGTTTAGCACAAAGATGCGAGC
TGGGATGGAAGACCTCTGTCTATCGCCGTCGACTTGGTCGCCACCTTCGAAGGGCTGCTGGAAGTTGAATAGTGATGCCTCCTGGTGTTCTCGGACAAACACTGGCGGGC
TCGGATGGATTGTTCGACGATGGGATGGCTCAATAGTGAATGCCGACTTTAGAATAATCAAAAGGCAGTGGAAGATCAGCTGGTTGGAGACTCTGGCTTTGGTAGAAGGC
CTGAAATCGAAGCCAACAAACTCCCCCAAGCTATTTATCGAGCTTGACTTAGTGCAGGTGGTGAATATGCTGGAGGGGAAGGATGTGGATCTTACCGAACTGTCTCTTCA
TTCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGTCTGATCACCGCCCTTTGTTGGCAGAATGGACAAAAGAGCAAGTTATTCAGAGGCAGAACGGGGTTCAGTATCCTAAAAGATTCGAGGAAGGTTGGGCCAAATA
TGATGATTGCAAAAAGATAGTTGAGCACATCTGGAGAAAAAGGGGCCATGAGGATGGGCGTCCAATCTGGGTGATGACCAATAAATGTCTACGAAAACGTTCAGCTTGGA
GCAGAAACAAATACGAGGGGTCCATTAGAGGTGCTATAGCGAGAAAGGAGAATGAAATAAAGGATCTGAGAAATTGTAAAGATCAAAATAGCCTAAAGGACATGGAACAA
AAAGAAAAATATCTTGAAAATTTATTGGAGGATGATGAGATTTATTGGCGGCAAAGGGCTAGAGAAGAGTGGCTTAATTGGAGGGATAGAAATACCAAATGGTTTCATTT
AAAGGCATCTACAAGATGGAAAGCGAACAGAATTCGCGGTCTTACGGATGAGATGGGAGGATGGATTGAGGACAATGAAGGGAGTTCGAATGAGCAATTAGTGAAAGCCT
CCTTCATGGACTATGATGCTAGGGTCATTTTGAATATTCCCATTAATCCTTTGATTAGGGAGGATGAGATCATTTGGGATTTAGACCCTAGAGGGGTTTTCTTTGTTAAG
AGTGCATATAGGCTGAGAGTTCAGCTCCAAAACAATGCGGCAACGTCACCATCAAACTACATTCGAATATGCGGGAAACCACAGTTCACTTATGTTGGGAGTAGTGATTT
TCTGGAAAAGTTTTGGGGGCGCAACAATGAAGATAGGATCGAGATTGGAAATTTATGCAAGAGCCTCGTTATATGTCGGCAGATTTGGGAGCATAGAAACGAGATTTACC
AGTGCAAGGCTAAATCTGATTTTGACAATTTGAAAATCAGAATCCAGAAGTACCTGACAGAATTTTCAATTCCGATTGAAGAAGATGAGCACCTCAGGCAGGGTAGGAGT
CAAATACCGGACGGAAGCTTCTCGAGTCATATGGAATCGATCCAGAACCTGCAAGTGGGCGATTCAGCTCCCCAAAACCCTCGAATACCGTTTAGCACAAAGATGCGAGC
TGGGATGGAAGACCTCTGTCTATCGCCGTCGACTTGGTCGCCACCTTCGAAGGGCTGCTGGAAGTTGAATAGTGATGCCTCCTGGTGTTCTCGGACAAACACTGGCGGGC
TCGGATGGATTGTTCGACGATGGGATGGCTCAATAGTGAATGCCGACTTTAGAATAATCAAAAGGCAGTGGAAGATCAGCTGGTTGGAGACTCTGGCTTTGGTAGAAGGC
CTGAAATCGAAGCCAACAAACTCCCCCAAGCTATTTATCGAGCTTGACTTAGTGCAGGTGGTGAATATGCTGGAGGGGAAGGATGTGGATCTTACCGAACTGTCTCTTCA
TTCATGA
Protein sequenceShow/hide protein sequence
MASDHRPLLAEWTKEQVIQRQNGVQYPKRFEEGWAKYDDCKKIVEHIWRKRGHEDGRPIWVMTNKCLRKRSAWSRNKYEGSIRGAIARKENEIKDLRNCKDQNSLKDMEQ
KEKYLENLLEDDEIYWRQRAREEWLNWRDRNTKWFHLKASTRWKANRIRGLTDEMGGWIEDNEGSSNEQLVKASFMDYDARVILNIPINPLIREDEIIWDLDPRGVFFVK
SAYRLRVQLQNNAATSPSNYIRICGKPQFTYVGSSDFLEKFWGRNNEDRIEIGNLCKSLVICRQIWEHRNEIYQCKAKSDFDNLKIRIQKYLTEFSIPIEEDEHLRQGRS
QIPDGSFSSHMESIQNLQVGDSAPQNPRIPFSTKMRAGMEDLCLSPSTWSPPSKGCWKLNSDASWCSRTNTGGLGWIVRRWDGSIVNADFRIIKRQWKISWLETLALVEG
LKSKPTNSPKLFIELDLVQVVNMLEGKDVDLTELSLHS