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Spg005476 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg005476
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold7:26767297..26769458
RNA-Seq ExpressionSpg005476
SyntenySpg005476
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]1.9e-3859.67Show/hide
Query:  TGFSSKAGGSLVFSDVLSILGP-----------------------RGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPT
        TGFSSK GG LVFSD LSIL                         RGNRSSLQ+GELD T             PL TLSVLRDNDAVVEIELPVPDTLPT
Subjt:  TGFSSKAGGSLVFSDVLSILGP-----------------------RGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPT

Query:  SAESSRSSSS----------------YFPNQVMSGLHHVYVERFSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTPL
        SAESS S+SS                YF NQVMS LH V    FSV VGSTGIVRGDDVCWLHAVFRAK  GGPGGGVT L
Subjt:  SAESSRSSSS----------------YFPNQVMSGLHHVYVERFSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTPL

KAA0064296.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.9e-3965Show/hide
Query:  STGFSSKAGGSLVFSDVLSIL-------------------GPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAE
        STGFSSK G  LVFSD LSIL                    PRGN+ SLQTGELDKT             PL T SVL DNDAVVEIEL VPDTLPTSAE
Subjt:  STGFSSKAGGSLVFSDVLSIL-------------------GPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAE

Query:  SSRSSSSYFPNQVMSGLHHVYVERFSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT
        S  S+SSYF NQVMSGLH V    F+VSVGSTGIVRGDDVC LH VFRAK AGGPGGGVT
Subjt:  SSRSSSSYFPNQVMSGLHHVYVERFSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]2.3e-5251.59Show/hide
Query:  IFQPNFISFLHHFPFKLSEHFEERVKEEEGEEFRGLRLKKIGKSSCKASHCRIWVQTSTGFSSKAGGSLVFSDVLSILG---------------------
        +FQPNFISFLHHFP KLSEHFEERVKEEE EEFRGLRLKKIGKSSCKA+HCRIW   STGFSSK  G LVFSD LSIL                      
Subjt:  IFQPNFISFLHHFPFKLSEHFEERVKEEEGEEFRGLRLKKIGKSSCKASHCRIWVQTSTGFSSKAGGSLVFSDVLSILG---------------------

Query:  --PRGNRSSLQTGELDKTPEAIWYRVH------------TGYIPLLTLSVLRDNDAVV----------------------------------------EI
          PRGNRSSLQTG+LDK   +I Y                   PL TLSVLRDNDAVV                                        EI
Subjt:  --PRGNRSSLQTGELDKTPEAIWYRVH------------TGYIPLLTLSVLRDNDAVV----------------------------------------EI

Query:  ELPVPDTLPTSAESSRSSSS----------YFPNQVMSGLHHVYVERFSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT
        EL VPDTLPTSAESS S+SS          Y P+ V +        R    V S GIVR +DVCWLHAVFRAK+AGG GGGVT
Subjt:  ELPVPDTLPTSAESSRSSSS----------YFPNQVMSGLHHVYVERFSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]1.4e-3662.5Show/hide
Query:  STGFSSKAGGSLVFSDVLSI-----------LGPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSS-
        STGFSSK GG LV SD LSI           LGPRGNR SLQTGELDKT              L TLSVLRDN+AV  IELPVPDTLPTSAESS S+SS 
Subjt:  STGFSSKAGGSLVFSDVLSI-----------LGPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSS-

Query:  ---------------YFPNQVMSGLHHVYVERFSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT
                        F NQVMS LH V    F+VSVGSTGIVRGDDVCWLHAVFRAK  GGPGGGVT
Subjt:  ---------------YFPNQVMSGLHHVYVERFSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]1.9e-3859.67Show/hide
Query:  TGFSSKAGGSLVFSDVLSILGP-----------------------RGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPT
        TGFSSK GG LVFSD LSIL                         RGNRSSLQ+GELD T             PL TLSVLRDNDAVVEIELPVPDTLPT
Subjt:  TGFSSKAGGSLVFSDVLSILGP-----------------------RGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPT

Query:  SAESSRSSSS----------------YFPNQVMSGLHHVYVERFSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTPL
        SAESS S+SS                YF NQVMS LH V    FSV VGSTGIVRGDDVCWLHAVFRAK  GGPGGGVT L
Subjt:  SAESSRSSSS----------------YFPNQVMSGLHHVYVERFSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTPL

TrEMBL top hitse value%identityAlignment
A0A5A7V9N3 Reverse transcriptase9.2e-3959.67Show/hide
Query:  TGFSSKAGGSLVFSDVLSILGP-----------------------RGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPT
        TGFSSK GG LVFSD LSIL                         RGNRSSLQ+GELD T             PL TLSVLRDNDAVVEIELPVPDTLPT
Subjt:  TGFSSKAGGSLVFSDVLSILGP-----------------------RGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPT

Query:  SAESSRSSSS----------------YFPNQVMSGLHHVYVERFSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTPL
        SAESS S+SS                YF NQVMS LH V    FSV VGSTGIVRGDDVCWLHAVFRAK  GGPGGGVT L
Subjt:  SAESSRSSSS----------------YFPNQVMSGLHHVYVERFSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTPL

A0A5A7VD33 Putative DNA/RNA polymerases superfamily protein1.4e-3965Show/hide
Query:  STGFSSKAGGSLVFSDVLSIL-------------------GPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAE
        STGFSSK G  LVFSD LSIL                    PRGN+ SLQTGELDKT             PL T SVL DNDAVVEIEL VPDTLPTSAE
Subjt:  STGFSSKAGGSLVFSDVLSIL-------------------GPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAE

Query:  SSRSSSSYFPNQVMSGLHHVYVERFSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT
        S  S+SSYF NQVMSGLH V    F+VSVGSTGIVRGDDVC LH VFRAK AGGPGGGVT
Subjt:  SSRSSSSYFPNQVMSGLHHVYVERFSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT

A0A5D3CAC6 Uncharacterized protein1.1e-5251.59Show/hide
Query:  IFQPNFISFLHHFPFKLSEHFEERVKEEEGEEFRGLRLKKIGKSSCKASHCRIWVQTSTGFSSKAGGSLVFSDVLSILG---------------------
        +FQPNFISFLHHFP KLSEHFEERVKEEE EEFRGLRLKKIGKSSCKA+HCRIW   STGFSSK  G LVFSD LSIL                      
Subjt:  IFQPNFISFLHHFPFKLSEHFEERVKEEEGEEFRGLRLKKIGKSSCKASHCRIWVQTSTGFSSKAGGSLVFSDVLSILG---------------------

Query:  --PRGNRSSLQTGELDKTPEAIWYRVH------------TGYIPLLTLSVLRDNDAVV----------------------------------------EI
          PRGNRSSLQTG+LDK   +I Y                   PL TLSVLRDNDAVV                                        EI
Subjt:  --PRGNRSSLQTGELDKTPEAIWYRVH------------TGYIPLLTLSVLRDNDAVV----------------------------------------EI

Query:  ELPVPDTLPTSAESSRSSSS----------YFPNQVMSGLHHVYVERFSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT
        EL VPDTLPTSAESS S+SS          Y P+ V +        R    V S GIVR +DVCWLHAVFRAK+AGG GGGVT
Subjt:  ELPVPDTLPTSAESSRSSSS----------YFPNQVMSGLHHVYVERFSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT

A0A5D3CJX3 CCHC-type domain-containing protein6.6e-3762.5Show/hide
Query:  STGFSSKAGGSLVFSDVLSI-----------LGPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSS-
        STGFSSK GG LV SD LSI           LGPRGNR SLQTGELDKT              L TLSVLRDN+AV  IELPVPDTLPTSAESS S+SS 
Subjt:  STGFSSKAGGSLVFSDVLSI-----------LGPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSS-

Query:  ---------------YFPNQVMSGLHHVYVERFSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT
                        F NQVMS LH V    F+VSVGSTGIVRGDDVCWLHAVFRAK  GGPGGGVT
Subjt:  ---------------YFPNQVMSGLHHVYVERFSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT

A0A5D3DSY7 Putative Retrotransposon protein9.2e-3959.67Show/hide
Query:  TGFSSKAGGSLVFSDVLSILGP-----------------------RGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPT
        TGFSSK GG LVFSD LSIL                         RGNRSSLQ+GELD T             PL TLSVLRDNDAVVEIELPVPDTLPT
Subjt:  TGFSSKAGGSLVFSDVLSILGP-----------------------RGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPT

Query:  SAESSRSSSS----------------YFPNQVMSGLHHVYVERFSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTPL
        SAESS S+SS                YF NQVMS LH V    FSV VGSTGIVRGDDVCWLHAVFRAK  GGPGGGVT L
Subjt:  SAESSRSSSS----------------YFPNQVMSGLHHVYVERFSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTPL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAGCACAAAGCCCACCACCGACAACCACATTTTTCAGCCCAATTTCATTTCATTTCTCCATCATTTTCCATTCAAACTTTCAGAGCACTTTGAGGAGAGAGTGAA
GGAAGAAGAAGGAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGAAAAAGTTCATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAACTAGCACAGGATTTTCGA
GCAAAGCAGGAGGATCTCTGGTTTTCTCTGATGTTTTGAGCATTCTGGGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTCCCGAGGCTATA
TGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTC
TGCTGAAAGTTCTAGATCAAGCTCCAGTTACTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTCAGCGTTTCAGTAGGGTCAACAGGGATCG
TTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACACCACTAATCTTGAATTTCCATGATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGACAGCACAAAGCCCACCACCGACAACCACATTTTTCAGCCCAATTTCATTTCATTTCTCCATCATTTTCCATTCAAACTTTCAGAGCACTTTGAGGAGAGAGTGAA
GGAAGAAGAAGGAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGAAAAAGTTCATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAACTAGCACAGGATTTTCGA
GCAAAGCAGGAGGATCTCTGGTTTTCTCTGATGTTTTGAGCATTCTGGGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTCCCGAGGCTATA
TGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTC
TGCTGAAAGTTCTAGATCAAGCTCCAGTTACTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTCAGCGTTTCAGTAGGGTCAACAGGGATCG
TTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACACCACTAATCTTGAATTTCCATGATTAA
Protein sequenceShow/hide protein sequence
MDSTKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEGEEFRGLRLKKIGKSSCKASHCRIWVQTSTGFSSKAGGSLVFSDVLSILGPRGNRSSLQTGELDKTPEAI
WYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTPLILNFHD