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Spg005478 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg005478
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold7:26943731..26946512
RNA-Seq ExpressionSpg005478
SyntenySpg005478
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]5.9e-0444.09Show/hide
Query:  PRGNRPSLQTRELAKTVEIELLVPD----NCQSLFSAKSFQIKL--------QLFSKPSYVRAALHVCLKVS---LEEDDVRLLHAISRTKLA
        PRGNRP+L T +L KTVEIEL VPD    + +S  S  S  ++L         LF KPS VR A +VC + S   +  DD+  LHA+   K A
Subjt:  PRGNRPSLQTRELAKTVEIELLVPD----NCQSLFSAKSFQIKL--------QLFSKPSYVRAALHVCLKVS---LEEDDVRLLHAISRTKLA

TYK11725.1 uncharacterized protein E5676_scaffold304G00370 [Cucumis melo var. makuwa]2.7e-0443.88Show/hide
Query:  PRGNRPSLQTRELAKT-----------------VEIELLVPDNCQSLFSAKSFQIKLQLFSKPSYVRAALHVCLKVS---LEEDDVRLLHAISRTKLA
        PRGNRPSLQT EL KT                 VEIEL VPD   +            LF KPS VRAA +VC + S   +  DDV  LHA+ R K+A
Subjt:  PRGNRPSLQTRELAKT-----------------VEIELLVPDNCQSLFSAKSFQIKLQLFSKPSYVRAALHVCLKVS---LEEDDVRLLHAISRTKLA

TYK15867.1 hypothetical protein E5676_scaffold637G00440 [Cucumis melo var. makuwa]3.5e-0438.3Show/hide
Query:  PRGNRPSLQTRELAKT-----------------VEIELLVPDNCQSLFSAKS---------------FQIK--LQLFSKPSYVRAALHVCLKVSLEE---
        PRGNRPSLQT +L KT                 VEIEL VPD   +  SAKS               F +K  ++LF KPS VRAA +VC +V +     
Subjt:  PRGNRPSLQTRELAKT-----------------VEIELLVPDNCQSLFSAKS---------------FQIK--LQLFSKPSYVRAALHVCLKVSLEE---

Query:  -DDVRLLHAISRTKLAVLLADSSRNSGFFRICFNSNEALPI
         DDV  LHAI R K           SG  R C   +E L +
Subjt:  -DDVRLLHAISRTKLAVLLADSSRNSGFFRICFNSNEALPI

TrEMBL top hitse value%identityAlignment
A0A5A7UAH6 CCHC-type domain-containing protein2.9e-0444.09Show/hide
Query:  PRGNRPSLQTRELAKTVEIELLVPD----NCQSLFSAKSFQIKL--------QLFSKPSYVRAALHVCLKVS---LEEDDVRLLHAISRTKLA
        PRGNRP+L T +L KTVEIEL VPD    + +S  S  S  ++L         LF KPS VR A +VC + S   +  DD+  LHA+   K A
Subjt:  PRGNRPSLQTRELAKTVEIELLVPD----NCQSLFSAKSFQIKL--------QLFSKPSYVRAALHVCLKVS---LEEDDVRLLHAISRTKLA

A0A5D3CJL4 Retrotrans_gag domain-containing protein1.3e-0443.88Show/hide
Query:  PRGNRPSLQTRELAKT-----------------VEIELLVPDNCQSLFSAKSFQIKLQLFSKPSYVRAALHVCLKVS---LEEDDVRLLHAISRTKLA
        PRGNRPSLQT EL KT                 VEIEL VPD   +            LF KPS VRAA +VC + S   +  DDV  LHA+ R K+A
Subjt:  PRGNRPSLQTRELAKT-----------------VEIELLVPDNCQSLFSAKSFQIKLQLFSKPSYVRAALHVCLKVS---LEEDDVRLLHAISRTKLA

A0A5D3CVC0 Uncharacterized protein1.7e-0438.3Show/hide
Query:  PRGNRPSLQTRELAKT-----------------VEIELLVPDNCQSLFSAKS---------------FQIK--LQLFSKPSYVRAALHVCLKVSLEE---
        PRGNRPSLQT +L KT                 VEIEL VPD   +  SAKS               F +K  ++LF KPS VRAA +VC +V +     
Subjt:  PRGNRPSLQTRELAKT-----------------VEIELLVPDNCQSLFSAKS---------------FQIK--LQLFSKPSYVRAALHVCLKVSLEE---

Query:  -DDVRLLHAISRTKLAVLLADSSRNSGFFRICFNSNEALPI
         DDV  LHAI R K           SG  R C   +E L +
Subjt:  -DDVRLLHAISRTKLAVLLADSSRNSGFFRICFNSNEALPI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGAATCTGGGCCAAGAGGAAATAGACCGAGTCTACAGACCAGGGAACTAGCCAAGACTGTAGAGATCGAGCTCCTAGTGCCTGATAACTGCCAAAGTCTTTTTTC
TGCTAAAAGCTTCCAGATCAAGCTCCAGTTATTTTCCAAACCGAGTTATGTTAGGGCTGCACTTCATGTATGTCTAAAGGTATCGTTAGAGGAGGACGATGTCCGTTTGC
TTCACGCCATCTCCCGGACTAAGCTAGCAGTCTTATTAGCGGATTCCTCCCGGAACTCCGGATTTTTTAGAATATGTTTCAACTCCAATGAAGCTCTACCGATCAAGCAC
TAG
mRNA sequenceShow/hide mRNA sequence
ATGGCAGAATCTGGGCCAAGAGGAAATAGACCGAGTCTACAGACCAGGGAACTAGCCAAGACTGTAGAGATCGAGCTCCTAGTGCCTGATAACTGCCAAAGTCTTTTTTC
TGCTAAAAGCTTCCAGATCAAGCTCCAGTTATTTTCCAAACCGAGTTATGTTAGGGCTGCACTTCATGTATGTCTAAAGGTATCGTTAGAGGAGGACGATGTCCGTTTGC
TTCACGCCATCTCCCGGACTAAGCTAGCAGTCTTATTAGCGGATTCCTCCCGGAACTCCGGATTTTTTAGAATATGTTTCAACTCCAATGAAGCTCTACCGATCAAGCAC
TAG
Protein sequenceShow/hide protein sequence
MAESGPRGNRPSLQTRELAKTVEIELLVPDNCQSLFSAKSFQIKLQLFSKPSYVRAALHVCLKVSLEEDDVRLLHAISRTKLAVLLADSSRNSGFFRICFNSNEALPIKH