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Spg005481 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg005481
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein
Genome locationscaffold7:26745361..26748369
RNA-Seq ExpressionSpg005481
SyntenySpg005481
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031678.1 retrotransposon protein [Cucumis melo var. makuwa]7.4e-1142.7Show/hide
Query:  HELVAILTTFTTAQAQILRDKIVEWPKEKRATEADFRDKIVTHLMEVPEVENRKRVKLMDILFNNMKATESFFSISAPLKLEYCEYLLD
        +E+V ++++ T      L+  I +WPKEKRATE + R ++V  L ++P++ ++ R KLM ILF +++A E F SI   LKLEYC  LL+
Subjt:  HELVAILTTFTTAQAQILRDKIVEWPKEKRATEADFRDKIVTHLMEVPEVENRKRVKLMDILFNNMKATESFFSISAPLKLEYCEYLLD

KAA0033290.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]2.4e-0949.25Show/hide
Query:  IVEWPKEKRATEADFRDKIVTHLMEVPEVENRKRVKLMDILFNNMKATESFFSISAPLKLEYCEYLL
        I  WPKEKRATE + R +++  L ++PE+++R R KL+ ILF +++A E F SI    KLEYC  LL
Subjt:  IVEWPKEKRATEADFRDKIVTHLMEVPEVENRKRVKLMDILFNNMKATESFFSISAPLKLEYCEYLL

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]2.4e-0949.25Show/hide
Query:  IVEWPKEKRATEADFRDKIVTHLMEVPEVENRKRVKLMDILFNNMKATESFFSISAPLKLEYCEYLL
        I +WPKEKRA E + R ++V  L ++P++ ++ R KLM ILF +++A E F SI   LKLEYC  LL
Subjt:  IVEWPKEKRATEADFRDKIVTHLMEVPEVENRKRVKLMDILFNNMKATESFFSISAPLKLEYCEYLL

XP_038880512.1 ER membrane protein complex subunit 6 [Benincasa hispida]5.7e-1153.62Show/hide
Query:  IVEWPKEKRATEADFRDKIVTHLMEVPEVENRKRVKLMDILFNNMKATESFFSISAPLKLEYCEYLLDE
        I EWPKEKRATE +   K+V+ L ++PE+ NRKRV+L+ I+F +++ T+SF SI   LKL+YC  LL E
Subjt:  IVEWPKEKRATEADFRDKIVTHLMEVPEVENRKRVKLMDILFNNMKATESFFSISAPLKLEYCEYLLDE

XP_038899283.1 uncharacterized protein LOC120086622 [Benincasa hispida]3.1e-0947.76Show/hide
Query:  IVEWPKEKRATEADFRDKIVTHLMEVPEVENRKRVKLMDILFNNMKATESFFSISAPLKLEYCEYLL
        I EW K++ ATE + R K+V  L ++P+++ ++++K M+I+F N+  TESF SI A +KLEYCE LL
Subjt:  IVEWPKEKRATEADFRDKIVTHLMEVPEVENRKRVKLMDILFNNMKATESFFSISAPLKLEYCEYLL

TrEMBL top hitse value%identityAlignment
A0A1S3B4L3 uncharacterized protein LOC1034859531.2e-0949.25Show/hide
Query:  IVEWPKEKRATEADFRDKIVTHLMEVPEVENRKRVKLMDILFNNMKATESFFSISAPLKLEYCEYLL
        I +WPKEKRA E + R ++V  L ++P++ ++ R KLM ILF +++A E F SI   LKLEYC  LL
Subjt:  IVEWPKEKRATEADFRDKIVTHLMEVPEVENRKRVKLMDILFNNMKATESFFSISAPLKLEYCEYLL

A0A5A7SQU2 Putative nuclease HARBI11.2e-0949.25Show/hide
Query:  IVEWPKEKRATEADFRDKIVTHLMEVPEVENRKRVKLMDILFNNMKATESFFSISAPLKLEYCEYLL
        I  WPKEKRATE + R +++  L ++PE+++R R KL+ ILF +++A E F SI    KLEYC  LL
Subjt:  IVEWPKEKRATEADFRDKIVTHLMEVPEVENRKRVKLMDILFNNMKATESFFSISAPLKLEYCEYLL

A0A5A7U0H7 Retrotransposon protein1.2e-0949.25Show/hide
Query:  IVEWPKEKRATEADFRDKIVTHLMEVPEVENRKRVKLMDILFNNMKATESFFSISAPLKLEYCEYLL
        I +WPKEKRA E + R ++V  L ++P++ ++ R KLM ILF +++A E F SI   LKLEYC  LL
Subjt:  IVEWPKEKRATEADFRDKIVTHLMEVPEVENRKRVKLMDILFNNMKATESFFSISAPLKLEYCEYLL

A0A5D3BZU3 Retrotransposon protein3.6e-1142.7Show/hide
Query:  HELVAILTTFTTAQAQILRDKIVEWPKEKRATEADFRDKIVTHLMEVPEVENRKRVKLMDILFNNMKATESFFSISAPLKLEYCEYLLD
        +E+V ++++ T      L+  I +WPKEKRATE + R ++V  L ++P++ ++ R KLM ILF +++A E F SI   LKLEYC  LL+
Subjt:  HELVAILTTFTTAQAQILRDKIVEWPKEKRATEADFRDKIVTHLMEVPEVENRKRVKLMDILFNNMKATESFFSISAPLKLEYCEYLLD

A0A5D3C1H4 Retrotransposon protein2.6e-0941.58Show/hide
Query:  VIMDPDE-LDPHELVAILTTFTTAQAQILRDKIVEWPKEKRATEADFRDKIVTHLMEVPEVENRKRVKLMDILFNNMKATESFFSISAPLKLEYCEYLLD
        V M PDE L    +  I     +A  Q+    I  WPK+KRATE + R K+V  L ++PE+ +R RVKLM I+F ++   E F      LKLEYC  LL+
Subjt:  VIMDPDE-LDPHELVAILTTFTTAQAQILRDKIVEWPKEKRATEADFRDKIVTHLMEVPEVENRKRVKLMDILFNNMKATESFFSISAPLKLEYCEYLLD

Query:  E
        +
Subjt:  E

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGCATGCTGGATTTGATGGGTTGGGACTTCGGATTTGCGTGGGGCGGACTCCTTCGCCAAGGAAACTAGTTCTTTCCTCATACTTTGCCTCCCCATCTCCTCCTAG
TAAGGGTTTGAAAACATACTTTCATCGACCTTACTTCGAGGTTCGTTTTTTTAAAGATCAAATGTTCCTTATTGTAATTATGGATCCCGATGAACTAGATCCCCATGAAC
TAGTGGCCATATTGACAACCTTCACCACAGCTCAAGCTCAGATTCTCCGAGATAAAATTGTAGAGTGGCCAAAAGAAAAACGTGCCACAGAGGCCGACTTCCGAGATAAA
ATTGTCACTCACTTGATGGAGGTACCCGAAGTGGAGAACCGAAAAAGGGTGAAGCTGATGGATATCCTTTTCAATAACATGAAAGCGACAGAGAGCTTCTTCTCCATTTC
GGCTCCTCTGAAGTTGGAGTATTGTGAATACCTTCTGGACGAACGCAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGCATGCTGGATTTGATGGGTTGGGACTTCGGATTTGCGTGGGGCGGACTCCTTCGCCAAGGAAACTAGTTCTTTCCTCATACTTTGCCTCCCCATCTCCTCCTAG
TAAGGGTTTGAAAACATACTTTCATCGACCTTACTTCGAGGTTCGTTTTTTTAAAGATCAAATGTTCCTTATTGTAATTATGGATCCCGATGAACTAGATCCCCATGAAC
TAGTGGCCATATTGACAACCTTCACCACAGCTCAAGCTCAGATTCTCCGAGATAAAATTGTAGAGTGGCCAAAAGAAAAACGTGCCACAGAGGCCGACTTCCGAGATAAA
ATTGTCACTCACTTGATGGAGGTACCCGAAGTGGAGAACCGAAAAAGGGTGAAGCTGATGGATATCCTTTTCAATAACATGAAAGCGACAGAGAGCTTCTTCTCCATTTC
GGCTCCTCTGAAGTTGGAGTATTGTGAATACCTTCTGGACGAACGCAGTTGA
Protein sequenceShow/hide protein sequence
MLHAGFDGLGLRICVGRTPSPRKLVLSSYFASPSPPSKGLKTYFHRPYFEVRFFKDQMFLIVIMDPDELDPHELVAILTTFTTAQAQILRDKIVEWPKEKRATEADFRDK
IVTHLMEVPEVENRKRVKLMDILFNNMKATESFFSISAPLKLEYCEYLLDERS