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Spg005483 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg005483
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold7:27588248..27600625
RNA-Seq ExpressionSpg005483
SyntenySpg005483
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]7.5e-2152.76Show/hide
Query:  QIGCESLFHFFRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVGSAGRAPLHRRTSKCWLYWACPT-------QRRSVMLVEIELPVP
        ++   +L +   PRGNR SLQT E+DKT             PL TLSVL DNDAV SAG+APL +R       W C T       +  S  LVEIELPVP
Subjt:  QIGCESLFHFFRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVGSAGRAPLHRRTSKCWLYWACPT-------QRRSVMLVEIELPVP

Query:  DTLPTSAESSRTSSSTWVELYIESVHI
        D LPTSAESSR++SSTW+ELY ESVH+
Subjt:  DTLPTSAESSRTSSSTWVELYIESVHI
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]4.4e-0580Show/hide
Query:  VEIELPVPDTLPTSAESSRASSSMWVELYIESVHI
        VEIELPVPDTL TSAESSR++SS W+ELY ESVH+
Subjt:  VEIELPVPDTLPTSAESSRASSSMWVELYIESVHI
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]7.5e-2152.76Show/hide
Query:  QIGCESLFHFFRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVGSAGRAPLHRRTSKCWLYWACPT-------QRRSVMLVEIELPVP
        ++   +L +   PRGNR SLQT E+DKT             PL TLSVL DNDAV SAG+APL +R       W C T       +  S  LVEIELPVP
Subjt:  QIGCESLFHFFRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVGSAGRAPLHRRTSKCWLYWACPT-------QRRSVMLVEIELPVP

Query:  DTLPTSAESSRTSSSTWVELYIESVHI
        D LPTSAESSR++SSTW+ELY ESVH+
Subjt:  DTLPTSAESSRTSSSTWVELYIESVHI
KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.0e-0560.42Show/hide
Query:  DKTVEIELPVPDTLPTSAESSRASSSMWVELYIESVHIVNVLFNVQEG
        D  VEIELPVPDTLPTSAES  ++SS W+ELY ESVH+    +   +G
Subjt:  DKTVEIELPVPDTLPTSAESSRASSSMWVELYIESVHIVNVLFNVQEG
KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]1.6e-2362.39Show/hide
Query:  PRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVGSAG------------RAPLHRRTSKCWLYWACPTQRRSVML----------VEIEL
        PRGNRSSLQTGELDKT              L TLSVLRDNDAV SAG            RAPLHRRTSK WLYWACPT RRSVML          VEIEL
Subjt:  PRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVGSAG------------RAPLHRRTSKCWLYWACPTQRRSVML----------VEIEL

Query:  PVPDTLPTSAESSRTSS
         VPDTLPTSAESS ++S
Subjt:  PVPDTLPTSAESSRTSS
TYJ98800.1 uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]1.6e-2362.39Show/hide
Query:  PRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVGSAG------------RAPLHRRTSKCWLYWACPTQRRSVML----------VEIEL
        PRGNRSSLQTGELDKT              L TLSVLRDNDAV SAG            RAPLHRRTSK WLYWACPT RRSVML          VEIEL
Subjt:  PRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVGSAG------------RAPLHRRTSKCWLYWACPTQRRSVML----------VEIEL

Query:  PVPDTLPTSAESSRTSS
         VPDTLPTSAESS ++S
Subjt:  PVPDTLPTSAESSRTSS
TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]4.4e-0580Show/hide
Query:  VEIELPVPDTLPTSAESSRASSSMWVELYIESVHI
        VEIELPVPDTL TSAESSR++SS W+ELY ESVH+
Subjt:  VEIELPVPDTLPTSAESSRASSSMWVELYIESVHI
TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]7.0e-1941.21Show/hide
Query:  PRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVGSAGRAPLHRRTSKCWLYWACPTQRRSVMLVEIELPVPDTLPTSAESSRTSSSTWVE
        PRGNR SLQTGELDKT              L TLSVLRDND V                              VEIELP+PDTLPTSAESS ++SST +E
Subjt:  PRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVGSAGRAPLHRRTSKCWLYWACPTQRRSVMLVEIELPVPDTLPTSAESSRTSSSTWVE

Query:  LYIESVHIVNVLFNVQEGQRLDVGSVQIELAEYGPSIVESESR------VMPPRTSRQRRQNQDGTQDHTE-VSLKGVPVPREKIGKAHAKAAIAESEI
        LY ESVH+   +F         VG ++ +   +  ++  +++       VMPPRTSR+RRQNQDGTQD T+  S +G   PR +      + A +  EI
Subjt:  LYIESVHIVNVLFNVQEGQRLDVGSVQIELAEYGPSIVESESR------VMPPRTSRQRRQNQDGTQDHTE-VSLKGVPVPREKIGKAHAKAAIAESEI
TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase2.1e-0580Show/hide
Query:  VEIELPVPDTLPTSAESSRASSSMWVELYIESVHI
        VEIELPVPDTL TSAESSR++SS W+ELY ESVH+
Subjt:  VEIELPVPDTLPTSAESSRASSSMWVELYIESVHI
A0A5A7T7M6 Reverse transcriptase3.4e-1941.21Show/hide
Query:  PRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVGSAGRAPLHRRTSKCWLYWACPTQRRSVMLVEIELPVPDTLPTSAESSRTSSSTWVE
        PRGNR SLQTGELDKT              L TLSVLRDND V                              VEIELP+PDTLPTSAESS ++SST +E
Subjt:  PRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVGSAGRAPLHRRTSKCWLYWACPTQRRSVMLVEIELPVPDTLPTSAESSRTSSSTWVE

Query:  LYIESVHIVNVLFNVQEGQRLDVGSVQIELAEYGPSIVESESR------VMPPRTSRQRRQNQDGTQDHTE-VSLKGVPVPREKIGKAHAKAAIAESEI
        LY ESVH+   +F         VG ++ +   +  ++  +++       VMPPRTSR+RRQNQDGTQD T+  S +G   PR +      + A +  EI
Subjt:  LYIESVHIVNVLFNVQEGQRLDVGSVQIELAEYGPSIVESESR------VMPPRTSRQRRQNQDGTQDHTE-VSLKGVPVPREKIGKAHAKAAIAESEI
A0A5A7TKT0 Reverse transcriptase9.6e-0660.42Show/hide
Query:  DKTVEIELPVPDTLPTSAESSRASSSMWVELYIESVHIVNVLFNVQEG
        D  VEIELPVPDTLPTSAES  ++SS W+ELY ESVH+    +   +G
Subjt:  DKTVEIELPVPDTLPTSAESSRASSSMWVELYIESVHIVNVLFNVQEG
A0A5A7VGQ5 Uncharacterized protein7.8e-2462.39Show/hide
Query:  PRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVGSAG------------RAPLHRRTSKCWLYWACPTQRRSVML----------VEIEL
        PRGNRSSLQTGELDKT              L TLSVLRDNDAV SAG            RAPLHRRTSK WLYWACPT RRSVML          VEIEL
Subjt:  PRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVGSAG------------RAPLHRRTSKCWLYWACPTQRRSVML----------VEIEL

Query:  PVPDTLPTSAESSRTSS
         VPDTLPTSAESS ++S
Subjt:  PVPDTLPTSAESSRTSS
A0A5D3BG85 Uncharacterized protein7.8e-2462.39Show/hide
Query:  PRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVGSAG------------RAPLHRRTSKCWLYWACPTQRRSVML----------VEIEL
        PRGNRSSLQTGELDKT              L TLSVLRDNDAV SAG            RAPLHRRTSK WLYWACPT RRSVML          VEIEL
Subjt:  PRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVGSAG------------RAPLHRRTSKCWLYWACPTQRRSVML----------VEIEL

Query:  PVPDTLPTSAESSRTSS
         VPDTLPTSAESS ++S
Subjt:  PVPDTLPTSAESSRTSS
A0A5D3BTP3 Reverse transcriptase3.6e-2152.76Show/hide
Query:  QIGCESLFHFFRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVGSAGRAPLHRRTSKCWLYWACPT-------QRRSVMLVEIELPVP
        ++   +L +   PRGNR SLQT E+DKT             PL TLSVL DNDAV SAG+APL +R       W C T       +  S  LVEIELPVP
Subjt:  QIGCESLFHFFRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVGSAGRAPLHRRTSKCWLYWACPT-------QRRSVMLVEIELPVP

Query:  DTLPTSAESSRTSSSTWVELYIESVHI
        D LPTSAESSR++SSTW+ELY ESVH+
Subjt:  DTLPTSAESSRTSSSTWVELYIESVHI
A0A5D3BTP3 Reverse transcriptase2.1e-0580Show/hide
Query:  VEIELPVPDTLPTSAESSRASSSMWVELYIESVHI
        VEIELPVPDTL TSAESSR++SS W+ELY ESVH+
Subjt:  VEIELPVPDTLPTSAESSRASSSMWVELYIESVHI
A0A5D3BTP3 Reverse transcriptase3.6e-2152.76Show/hide
Query:  QIGCESLFHFFRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVGSAGRAPLHRRTSKCWLYWACPT-------QRRSVMLVEIELPVP
        ++   +L +   PRGNR SLQT E+DKT             PL TLSVL DNDAV SAG+APL +R       W C T       +  S  LVEIELPVP
Subjt:  QIGCESLFHFFRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVGSAGRAPLHRRTSKCWLYWACPT-------QRRSVMLVEIELPVP

Query:  DTLPTSAESSRTSSSTWVELYIESVHI
        D LPTSAESSR++SSTW+ELY ESVH+
Subjt:  DTLPTSAESSRTSSSTWVELYIESVHI
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAGAGTGAAGGAGGAAGAAGAAGAAGATTTTCGTGGTTTTGAGGGAAATTCTGGGCAAATCGGTTGTGAATCTCTTTTTCATTTCTTCAGGCCAAGAGGAAATAG
GTCGAGTCTACAAACCGGGGAACTAGATAAGACACCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTTCGTGACAACGATG
CTGTCGGGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAATGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTAGAGATCGAGCTC
CCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGT
TCAGGAGGGTCAGCGGTTAGACGTTGGGTCAGTTCAGATAGAACTAGCGGAGTATGGTCCGAGTATTGTTGAGAGTGAGTCCAGAGTCATGCCACCACGTACCAGCAGAC
AACGCAGGCAGAATCAGGACGGGACGCAGGATCATACCGAAGTCAGTCTGAAAGGGGTTCCAGTACCCCGAGAGAAGATAGGAAAAGCTCATGCAAAGGCAGCCATAGCA
GAATCTGAGATCAACCTGTCAACATCTGGTGTTTTATTCGGTTTGAGCTACACAGAAGGAAATAAGAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGA
TAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCGGAAAGTTCCAGAGCAAGCTCCAGTATGTGGGTGGAGTTGTATATTGAGTCTGTTCATA
TTGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCGGAGAAAATCGAGGGAGAAGGGAAATCTACGAGTCTCGCACGCTGATGCCTGTGGGTCATTGCACACTGATGCT
CATGGGTCTTTGCGCACGAGGAGGGAAAACAAGAAGGAGCGATGGAGAGAAAGGACCGCATGGCGTTACATTCACGCCCTCGTCTTTTCCTTATTTGAGCAGCGTCCCGA
CGCTTTAGTTGAAGGGTCTCAACGCTTCGACAGCTCCAAGGGCAGAAAAGTCATTTTACGCTCTGGTTTTGCTCGTTTAATCCCCGAATCGCTTCCAAAGCTCCGCGTGA
TGCGGAAATCACGTGTTAAGATTGCGCTACATGACGCGGAAATCATGTTATTGGTGCGCAATGTGACGCGTAGATCATGTGTGGGTTGTGAGTGCGGTGTTGATGGGTGT
TATGAGCCTGGTGATGCTGACGATGAGGCACACGAGGAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGAGAGTGAAGGAGGAAGAAGAAGAAGATTTTCGTGGTTTTGAGGGAAATTCTGGGCAAATCGGTTGTGAATCTCTTTTTCATTTCTTCAGGCCAAGAGGAAATAG
GTCGAGTCTACAAACCGGGGAACTAGATAAGACACCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTTCGTGACAACGATG
CTGTCGGGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAATGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTAGAGATCGAGCTC
CCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGT
TCAGGAGGGTCAGCGGTTAGACGTTGGGTCAGTTCAGATAGAACTAGCGGAGTATGGTCCGAGTATTGTTGAGAGTGAGTCCAGAGTCATGCCACCACGTACCAGCAGAC
AACGCAGGCAGAATCAGGACGGGACGCAGGATCATACCGAAGTCAGTCTGAAAGGGGTTCCAGTACCCCGAGAGAAGATAGGAAAAGCTCATGCAAAGGCAGCCATAGCA
GAATCTGAGATCAACCTGTCAACATCTGGTGTTTTATTCGGTTTGAGCTACACAGAAGGAAATAAGAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGA
TAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCGGAAAGTTCCAGAGCAAGCTCCAGTATGTGGGTGGAGTTGTATATTGAGTCTGTTCATA
TTGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCGGAGAAAATCGAGGGAGAAGGGAAATCTACGAGTCTCGCACGCTGATGCCTGTGGGTCATTGCACACTGATGCT
CATGGGTCTTTGCGCACGAGGAGGGAAAACAAGAAGGAGCGATGGAGAGAAAGGACCGCATGGCGTTACATTCACGCCCTCGTCTTTTCCTTATTTGAGCAGCGTCCCGA
CGCTTTAGTTGAAGGGTCTCAACGCTTCGACAGCTCCAAGGGCAGAAAAGTCATTTTACGCTCTGGTTTTGCTCGTTTAATCCCCGAATCGCTTCCAAAGCTCCGCGTGA
TGCGGAAATCACGTGTTAAGATTGCGCTACATGACGCGGAAATCATGTTATTGGTGCGCAATGTGACGCGTAGATCATGTGTGGGTTGTGAGTGCGGTGTTGATGGGTGT
TATGAGCCTGGTGATGCTGACGATGAGGCACACGAGGAGTGA
Protein sequenceShow/hide protein sequence
MERVKEEEEEDFRGFEGNSGQIGCESLFHFFRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVGSAGRAPLHRRTSKCWLYWACPTQRRSVMLVEIEL
PVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRLDVGSVQIELAEYGPSIVESESRVMPPRTSRQRRQNQDGTQDHTEVSLKGVPVPREKIGKAHAKAAIA
ESEINLSTSGVLFGLSYTEGNKRPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRASSSMWVELYIESVHIVNVLFNVQEGQRRKSREKGNLRVSHADACGSLHTDA
HGSLRTRRENKKERWRERTAWRYIHALVFSLFEQRPDALVEGSQRFDSSKGRKVILRSGFARLIPESLPKLRVMRKSRVKIALHDAEIMLLVRNVTRRSCVGCECGVDGC
YEPGDADDEAHEE