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Spg005501 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg005501
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold7:25304252..25313839
RNA-Seq ExpressionSpg005501
SyntenySpg005501
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]1.4e-1650.76Show/hide
Query:  PLLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPTSAESSRTSSSSTFQ---EGQRVSL---------------
        PL TLSVL DNDAVVSAG+APL +R   RW     PT    +  S  LVEIELPVPD LPTSAESSR++SS+  +   E   V +               
Subjt:  PLLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPTSAESSRTSSSSTFQ---EGQRVSL---------------

Query:  -------EEDDVRWLHAIFRTKLAGGLGGGVT
                 DDV WLHAIFR K AGG GGGVT
Subjt:  -------EEDDVRWLHAIFRTKLAGGLGGGVT

KAA0041324.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]5.9e-1268.85Show/hide
Query:  GYIPLLTLSVLRDNDAVV------------SAGRAPLHRRTSKRWLYWACPTQRRSVMLVE
        GYI LLTLSVLRDN+ VV            SAGR PLHRRTSKRWLYWACPTQR  VMLV+
Subjt:  GYIPLLTLSVLRDNDAVV------------SAGRAPLHRRTSKRWLYWACPTQRRSVMLVE

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]3.6e-2560.48Show/hide
Query:  LLTLSVLRDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRRSVML----------VEIELPVPDTLPTSAESSRTSSSSTFQEGQRVSLE
        L TLSVLRDNDAVVSAG            RAPLHRRTSKRWLYWACPT RRSVML          VEIEL VPDTLPTSAESS ++S S         + 
Subjt:  LLTLSVLRDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRRSVML----------VEIELPVPDTLPTSAESSRTSSSSTFQEGQRVSLE

Query:  EDDVRWLHAIFRTKLAGGLGGGVT
         DDV WLH +FR K  GG GG VT
Subjt:  EDDVRWLHAIFRTKLAGGLGGGVT

TYJ98800.1 uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]3.6e-2560.48Show/hide
Query:  LLTLSVLRDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRRSVML----------VEIELPVPDTLPTSAESSRTSSSSTFQEGQRVSLE
        L TLSVLRDNDAVVSAG            RAPLHRRTSKRWLYWACPT RRSVML          VEIEL VPDTLPTSAESS ++S S         + 
Subjt:  LLTLSVLRDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRRSVML----------VEIELPVPDTLPTSAESSRTSSSSTFQEGQRVSLE

Query:  EDDVRWLHAIFRTKLAGGLGGGVT
         DDV WLH +FR K  GG GG VT
Subjt:  EDDVRWLHAIFRTKLAGGLGGGVT

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]1.4e-1650.76Show/hide
Query:  PLLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPTSAESSRTSSSSTFQ---EGQRVSL---------------
        PL TLSVL DNDAVVSAG+APL +R   RW     PT    +  S  LVEIELPVPD LPTSAESSR++SS+  +   E   V +               
Subjt:  PLLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPTSAESSRTSSSSTFQ---EGQRVSL---------------

Query:  -------EEDDVRWLHAIFRTKLAGGLGGGVT
                 DDV WLHAIFR K AGG GGGVT
Subjt:  -------EEDDVRWLHAIFRTKLAGGLGGGVT

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase6.6e-1750.76Show/hide
Query:  PLLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPTSAESSRTSSSSTFQ---EGQRVSL---------------
        PL TLSVL DNDAVVSAG+APL +R   RW     PT    +  S  LVEIELPVPD LPTSAESSR++SS+  +   E   V +               
Subjt:  PLLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPTSAESSRTSSSSTFQ---EGQRVSL---------------

Query:  -------EEDDVRWLHAIFRTKLAGGLGGGVT
                 DDV WLHAIFR K AGG GGGVT
Subjt:  -------EEDDVRWLHAIFRTKLAGGLGGGVT

A0A5A7TCY8 DNA/RNA polymerases superfamily protein2.9e-1268.85Show/hide
Query:  GYIPLLTLSVLRDNDAVV------------SAGRAPLHRRTSKRWLYWACPTQRRSVMLVE
        GYI LLTLSVLRDN+ VV            SAGR PLHRRTSKRWLYWACPTQR  VMLV+
Subjt:  GYIPLLTLSVLRDNDAVV------------SAGRAPLHRRTSKRWLYWACPTQRRSVMLVE

A0A5A7VGQ5 Uncharacterized protein1.7e-2560.48Show/hide
Query:  LLTLSVLRDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRRSVML----------VEIELPVPDTLPTSAESSRTSSSSTFQEGQRVSLE
        L TLSVLRDNDAVVSAG            RAPLHRRTSKRWLYWACPT RRSVML          VEIEL VPDTLPTSAESS ++S S         + 
Subjt:  LLTLSVLRDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRRSVML----------VEIELPVPDTLPTSAESSRTSSSSTFQEGQRVSLE

Query:  EDDVRWLHAIFRTKLAGGLGGGVT
         DDV WLH +FR K  GG GG VT
Subjt:  EDDVRWLHAIFRTKLAGGLGGGVT

A0A5D3BG85 Uncharacterized protein1.7e-2560.48Show/hide
Query:  LLTLSVLRDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRRSVML----------VEIELPVPDTLPTSAESSRTSSSSTFQEGQRVSLE
        L TLSVLRDNDAVVSAG            RAPLHRRTSKRWLYWACPT RRSVML          VEIEL VPDTLPTSAESS ++S S         + 
Subjt:  LLTLSVLRDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRRSVML----------VEIELPVPDTLPTSAESSRTSSSSTFQEGQRVSLE

Query:  EDDVRWLHAIFRTKLAGGLGGGVT
         DDV WLH +FR K  GG GG VT
Subjt:  EDDVRWLHAIFRTKLAGGLGGGVT

A0A5D3BTP3 Reverse transcriptase6.6e-1750.76Show/hide
Query:  PLLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPTSAESSRTSSSSTFQ---EGQRVSL---------------
        PL TLSVL DNDAVVSAG+APL +R   RW     PT    +  S  LVEIELPVPD LPTSAESSR++SS+  +   E   V +               
Subjt:  PLLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPTSAESSRTSSSSTFQ---EGQRVSL---------------

Query:  -------EEDDVRWLHAIFRTKLAGGLGGGVT
                 DDV WLHAIFR K AGG GGGVT
Subjt:  -------EEDDVRWLHAIFRTKLAGGLGGGVT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTTGAGGTTGAAGAAGATAGGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGAGTTCAACCTGTCAACCTCTGGTTTTTTATTCGATTTGAGCTACACAGA
AGGAACAAAGAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTCCTCTGGTGTTTCGAGCATTTTGGGTTGTACAAGTTGAATCAGAAGCTCTATTGGGTT
ATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGC
CCTACACAACGTAGATCGGTCATGTTAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTTCAACGTTCCAGGA
GGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCTGGGAGGGGGTGTGACAATGACTCTGATACTTC
TAGAGGCAAGAGACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTTTGAGGTTGAAGAAGATAGGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGAGTTCAACCTGTCAACCTCTGGTTTTTTATTCGATTTGAGCTACACAGA
AGGAACAAAGAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTCCTCTGGTGTTTCGAGCATTTTGGGTTGTACAAGTTGAATCAGAAGCTCTATTGGGTT
ATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGC
CCTACACAACGTAGATCGGTCATGTTAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTTCAACGTTCCAGGA
GGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCTGGGAGGGGGTGTGACAATGACTCTGATACTTC
TAGAGGCAAGAGACTGA
Protein sequenceShow/hide protein sequence
MVLRLKKIGKAHAKPAIAESEFNLSTSGFLFDLSYTEGTKRAQDFRAKQEDLWFPLVFRAFWVVQVESEALLGYIPLLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWAC
PTQRRSVMLVEIELPVPDTLPTSAESSRTSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGGVTMTLILLEARD