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Spg005524 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg005524
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Genome locationscaffold7:25792326..25795733
RNA-Seq ExpressionSpg005524
SyntenySpg005524
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022155098.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia]3.1e-1436.49Show/hide
Query:  VEQHPFPFFKNEQVPIHNQPGFSLPTE--SVVTPMGELFEILFSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFLTV
        V+ +P P  KN Q+      G    ++   + TPM  LFEIL+ +GY+ +E L  D+    YD++L C YH GA+GH ++QC  F+ KVQELLD   LTV
Subjt:  VEQHPFPFFKNEQVPIHNQPGFSLPTE--SVVTPMGELFEILFSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFLTV

Query:  SQKMVQLPQYGEVDIIEECSRQE------REKRLARLESREPKYQMNT
        +Q      Q   +D++E  S  E      + K L  L   +P+   N+
Subjt:  SQKMVQLPQYGEVDIIEECSRQE------REKRLARLESREPKYQMNT

XP_022155098.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia]1.6e-0553.23Show/hide
Query:  EEQSTEMEKTRKDIEELREKMDAILVALERGKIIPDIAQSSNTMNDPPIRQSTGGTTPKYHP
        +++ +E EKTRKDIEELREK+DAIL+ALE+GK    IA++SN +++PP  Q   G  P + P
Subjt:  EEQSTEMEKTRKDIEELREKMDAILVALERGKIIPDIAQSSNTMNDPPIRQSTGGTTPKYHP

XP_022155098.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia]2.6e-1348.19Show/hide
Query:  EREKRLARLESREPKYQMNTIPHLHDTFIFAGIIHPESQDPAIMA-IIEQKKEAGPLVYLCPEDFELNNWTVMELPSFVNEIS
        E+ KRL+R E+ E  Y   T+P L  +F  AGIIH E  + +++A + E++++ GP VY CP+ FEL+NW+V+ELPSFVN  S
Subjt:  EREKRLARLESREPKYQMNTIPHLHDTFIFAGIIHPESQDPAIMA-IIEQKKEAGPLVYLCPEDFELNNWTVMELPSFVNEIS

XP_022157796.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia]6.3e-1539.86Show/hide
Query:  VEQHPFPFFKNEQVPIHNQPGFSLPTE--SVVTPMGELFEILFSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFLTV
        V ++P    +N Q+      G    ++   + TP  ELFEIL  +GY+ VE L  +L  + YD+SL C +H GAKGHS++QC  FR+KVQELLDS  LTV
Subjt:  VEQHPFPFFKNEQVPIHNQPGFSLPTE--SVVTPMGELFEILFSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFLTV

Query:  --SQKMVQLPQYGEVDIIEECSRQEREKRLARLESREP
          S +   +    +V + E  S   + KRL    S +P
Subjt:  --SQKMVQLPQYGEVDIIEECSRQEREKRLARLESREP

XP_022157796.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia]8.8e-0944.44Show/hide
Query:  MEEQSTEMEKTRKDIEELREKMDAILVALERGKIIPDIAQSSNTMND------------PPIRQSTGGTTPK---YHPLYNIPVEQHPFPFFKN-EQVP
        ME+Q  E EKTRKDIEELREK+D I + LE+GK   D A SSN +++            PP+R    G  P+   Y+PLY++P+ Q+P  F K  +Q+P
Subjt:  MEEQSTEMEKTRKDIEELREKMDAILVALERGKIIPDIAQSSNTMND------------PPIRQSTGGTTPK---YHPLYNIPVEQHPFPFFKN-EQVP

XP_022157796.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia]3.1e-1444.25Show/hide
Query:  VVTPMGELFEILFSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFLTVSQ-------KMVQLPQYGEVDIIEECSRQE
        + TPM ELFEIL  +GY+ VE L  +L  + YD+SL C +H GAKGH+++QC  FR+ VQELLDS  LTV+         +V+     E  I E  S   
Subjt:  VVTPMGELFEILFSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFLTVSQ-------KMVQLPQYGEVDIIEECSRQE

Query:  REKRLARLESREP
        + KRL    S +P
Subjt:  REKRLARLESREP

XP_022158986.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia]3.7e-1542.28Show/hide
Query:  VEQHPFPFFKNEQVPIHNQPGFSLPTE--SVVTPMGELFEILFSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFLTV
        V ++P P  +N Q+           ++   + TPM ELFEIL  +GY+ VE L  +L  + YD+SL C +H GAKGHS++QC  FR+KVQELLDS  LTV
Subjt:  VEQHPFPFFKNEQVPIHNQPGFSLPTE--SVVTPMGELFEILFSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFLTV

Query:  SQKMVQLPQYGEVDIIEECSRQE
        +       Q   ++I+E+ S  E
Subjt:  SQKMVQLPQYGEVDIIEECSRQE

TrEMBL top hitse value%identityAlignment
A0A6J1DM29 LOW QUALITY PROTEIN: uncharacterized protein LOC1110222311.5e-1436.49Show/hide
Query:  VEQHPFPFFKNEQVPIHNQPGFSLPTE--SVVTPMGELFEILFSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFLTV
        V+ +P P  KN Q+      G    ++   + TPM  LFEIL+ +GY+ +E L  D+    YD++L C YH GA+GH ++QC  F+ KVQELLD   LTV
Subjt:  VEQHPFPFFKNEQVPIHNQPGFSLPTE--SVVTPMGELFEILFSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFLTV

Query:  SQKMVQLPQYGEVDIIEECSRQE------REKRLARLESREPKYQMNT
        +Q      Q   +D++E  S  E      + K L  L   +P+   N+
Subjt:  SQKMVQLPQYGEVDIIEECSRQE------REKRLARLESREPKYQMNT

A0A6J1DM29 LOW QUALITY PROTEIN: uncharacterized protein LOC1110222317.5e-0653.23Show/hide
Query:  EEQSTEMEKTRKDIEELREKMDAILVALERGKIIPDIAQSSNTMNDPPIRQSTGGTTPKYHP
        +++ +E EKTRKDIEELREK+DAIL+ALE+GK    IA++SN +++PP  Q   G  P + P
Subjt:  EEQSTEMEKTRKDIEELREKMDAILVALERGKIIPDIAQSSNTMNDPPIRQSTGGTTPKYHP

A0A6J1DM29 LOW QUALITY PROTEIN: uncharacterized protein LOC1110222311.3e-1348.19Show/hide
Query:  EREKRLARLESREPKYQMNTIPHLHDTFIFAGIIHPESQDPAIMA-IIEQKKEAGPLVYLCPEDFELNNWTVMELPSFVNEIS
        E+ KRL+R E+ E  Y   T+P L  +F  AGIIH E  + +++A + E++++ GP VY CP+ FEL+NW+V+ELPSFVN  S
Subjt:  EREKRLARLESREPKYQMNTIPHLHDTFIFAGIIHPESQDPAIMA-IIEQKKEAGPLVYLCPEDFELNNWTVMELPSFVNEIS

A0A6J1DZ90 Ribonuclease H3.0e-1539.86Show/hide
Query:  VEQHPFPFFKNEQVPIHNQPGFSLPTE--SVVTPMGELFEILFSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFLTV
        V ++P    +N Q+      G    ++   + TP  ELFEIL  +GY+ VE L  +L  + YD+SL C +H GAKGHS++QC  FR+KVQELLDS  LTV
Subjt:  VEQHPFPFFKNEQVPIHNQPGFSLPTE--SVVTPMGELFEILFSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFLTV

Query:  --SQKMVQLPQYGEVDIIEECSRQEREKRLARLESREP
          S +   +    +V + E  S   + KRL    S +P
Subjt:  --SQKMVQLPQYGEVDIIEECSRQEREKRLARLESREP

A0A6J1DZ90 Ribonuclease H4.3e-0944.44Show/hide
Query:  MEEQSTEMEKTRKDIEELREKMDAILVALERGKIIPDIAQSSNTMND------------PPIRQSTGGTTPK---YHPLYNIPVEQHPFPFFKN-EQVP
        ME+Q  E EKTRKDIEELREK+D I + LE+GK   D A SSN +++            PP+R    G  P+   Y+PLY++P+ Q+P  F K  +Q+P
Subjt:  MEEQSTEMEKTRKDIEELREKMDAILVALERGKIIPDIAQSSNTMND------------PPIRQSTGGTTPK---YHPLYNIPVEQHPFPFFKN-EQVP

A0A6J1DZ90 Ribonuclease H1.5e-1444.25Show/hide
Query:  VVTPMGELFEILFSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFLTVSQ-------KMVQLPQYGEVDIIEECSRQE
        + TPM ELFEIL  +GY+ VE L  +L  + YD+SL C +H GAKGH+++QC  FR+ VQELLDS  LTV+         +V+     E  I E  S   
Subjt:  VVTPMGELFEILFSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFLTVSQ-------KMVQLPQYGEVDIIEECSRQE

Query:  REKRLARLESREP
        + KRL    S +P
Subjt:  REKRLARLESREP

A0A6J1E2J7 Ribonuclease H1.8e-1542.28Show/hide
Query:  VEQHPFPFFKNEQVPIHNQPGFSLPTE--SVVTPMGELFEILFSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFLTV
        V ++P P  +N Q+           ++   + TPM ELFEIL  +GY+ VE L  +L  + YD+SL C +H GAKGHS++QC  FR+KVQELLDS  LTV
Subjt:  VEQHPFPFFKNEQVPIHNQPGFSLPTE--SVVTPMGELFEILFSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFLTV

Query:  SQKMVQLPQYGEVDIIEECSRQE
        +       Q   ++I+E+ S  E
Subjt:  SQKMVQLPQYGEVDIIEECSRQE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAGCAGAGTACTGAGATGGAGAAAACAAGGAAAGATATTGAGGAGTTACGAGAAAAAATGGATGCAATTCTTGTCGCCCTGGAAAGAGGCAAAATAATACCTGA
TATTGCTCAGTCCAGCAATACAATGAATGACCCTCCAATCCGGCAATCAACAGGGGGTACTACTCCAAAATATCATCCATTGTACAATATTCCAGTAGAGCAGCACCCAT
TTCCATTTTTCAAGAATGAGCAAGTGCCTATACATAATCAACCTGGATTTTCACTACCCACAGAGAGCGTAGTGACTCCCATGGGAGAACTATTCGAAATATTATTCAGT
AATGGATACATTGGTGTAGAACGCCTCCAATTAGATTTGGGTGTCAGAGCATACGATGACAGTTTGATGTGTTCTTATCACACTGGGGCAAAAGGGCATTCTATCGACCA
ATGTCCTCATTTTCGTCTGAAGGTCCAGGAGTTGTTAGATTCACATTTTTTAACAGTTTCTCAAAAGATGGTTCAGCTCCCTCAGTATGGGGAAGTTGATATTATAGAAG
AATGCTCAAGGCAGGAAAGAGAAAAACGACTGGCTAGATTGGAGAGTCGTGAGCCGAAGTATCAAATGAATACCATTCCTCATCTTCATGATACCTTCATCTTTGCTGGA
ATAATTCATCCAGAATCTCAAGACCCTGCAATCATGGCTATAATCGAACAGAAGAAAGAAGCTGGTCCCTTGGTTTATCTGTGCCCAGAAGACTTTGAACTCAATAATTG
GACTGTAATGGAGCTACCATCATTTGTTAATGAGATATCAAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGAGCAGAGTACTGAGATGGAGAAAACAAGGAAAGATATTGAGGAGTTACGAGAAAAAATGGATGCAATTCTTGTCGCCCTGGAAAGAGGCAAAATAATACCTGA
TATTGCTCAGTCCAGCAATACAATGAATGACCCTCCAATCCGGCAATCAACAGGGGGTACTACTCCAAAATATCATCCATTGTACAATATTCCAGTAGAGCAGCACCCAT
TTCCATTTTTCAAGAATGAGCAAGTGCCTATACATAATCAACCTGGATTTTCACTACCCACAGAGAGCGTAGTGACTCCCATGGGAGAACTATTCGAAATATTATTCAGT
AATGGATACATTGGTGTAGAACGCCTCCAATTAGATTTGGGTGTCAGAGCATACGATGACAGTTTGATGTGTTCTTATCACACTGGGGCAAAAGGGCATTCTATCGACCA
ATGTCCTCATTTTCGTCTGAAGGTCCAGGAGTTGTTAGATTCACATTTTTTAACAGTTTCTCAAAAGATGGTTCAGCTCCCTCAGTATGGGGAAGTTGATATTATAGAAG
AATGCTCAAGGCAGGAAAGAGAAAAACGACTGGCTAGATTGGAGAGTCGTGAGCCGAAGTATCAAATGAATACCATTCCTCATCTTCATGATACCTTCATCTTTGCTGGA
ATAATTCATCCAGAATCTCAAGACCCTGCAATCATGGCTATAATCGAACAGAAGAAAGAAGCTGGTCCCTTGGTTTATCTGTGCCCAGAAGACTTTGAACTCAATAATTG
GACTGTAATGGAGCTACCATCATTTGTTAATGAGATATCAAAGTAA
Protein sequenceShow/hide protein sequence
MEEQSTEMEKTRKDIEELREKMDAILVALERGKIIPDIAQSSNTMNDPPIRQSTGGTTPKYHPLYNIPVEQHPFPFFKNEQVPIHNQPGFSLPTESVVTPMGELFEILFS
NGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFLTVSQKMVQLPQYGEVDIIEECSRQEREKRLARLESREPKYQMNTIPHLHDTFIFAG
IIHPESQDPAIMAIIEQKKEAGPLVYLCPEDFELNNWTVMELPSFVNEISK