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Spg005533 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg005533
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold7:25432351..25439534
RNA-Seq ExpressionSpg005533
SyntenySpg005533
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]2.1e-0675Show/hide
Query:  FSFLQVEIKLPVPDTLPTSAESSRSSSSTWVELYIESVYI
        FS   VEI+LPVPD LPTSAESSRS+SSTW+ELY ESV++
Subjt:  FSFLQVEIKLPVPDTLPTSAESSRSSSSTWVELYIESVYI
KAA0040194.1 gag/pol protein [Cucumis melo var. makuwa]3.3e-0758.33Show/hide
Query:  VEIKLPVPDTLPTSAESSRSSSSTWVELYIESVYIVNVLFYVSGGSTAVGFAAANDSAGV
        VEI+LP+PDTLPTSAESS S+SSTW+ELY ESV+ V +LFY    + A  +     SAG+
Subjt:  VEIKLPVPDTLPTSAESSRSSSSTWVELYIESVYIVNVLFYVSGGSTAVGFAAANDSAGV
KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]3.3e-0758.33Show/hide
Query:  VEIKLPVPDTLPTSAESSRSSSSTWVELYIESVYIVNVLFYVSGGSTAVGFAAANDSAGV
        VEI+LPVPDTLPTSAESS+S+SSTW+ELY ESV+ V +LFY         +     SAG+
Subjt:  VEIKLPVPDTLPTSAESSRSSSSTWVELYIESVYIVNVLFYVSGGSTAVGFAAANDSAGV
TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]2.1e-0675Show/hide
Query:  FSFLQVEIKLPVPDTLPTSAESSRSSSSTWVELYIESVYI
        FS   VEI+LPVPD LPTSAESSRS+SSTW+ELY ESV++
Subjt:  FSFLQVEIKLPVPDTLPTSAESSRSSSSTWVELYIESVYI
TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]3.3e-0758.33Show/hide
Query:  VEIKLPVPDTLPTSAESSRSSSSTWVELYIESVYIVNVLFYVSGGSTAVGFAAANDSAGV
        VEI+LP+PDTLPTSAESS S+SSTW+ELY ESV+ V +LFY    + A  +     SAG+
Subjt:  VEIKLPVPDTLPTSAESSRSSSSTWVELYIESVYIVNVLFYVSGGSTAVGFAAANDSAGV
TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase1.0e-0675Show/hide
Query:  FSFLQVEIKLPVPDTLPTSAESSRSSSSTWVELYIESVYI
        FS   VEI+LPVPD LPTSAESSRS+SSTW+ELY ESV++
Subjt:  FSFLQVEIKLPVPDTLPTSAESSRSSSSTWVELYIESVYI
A0A5A7T9P7 Gag/pol protein1.6e-0758.33Show/hide
Query:  VEIKLPVPDTLPTSAESSRSSSSTWVELYIESVYIVNVLFYVSGGSTAVGFAAANDSAGV
        VEI+LP+PDTLPTSAESS S+SSTW+ELY ESV+ V +LFY    + A  +     SAG+
Subjt:  VEIKLPVPDTLPTSAESSRSSSSTWVELYIESVYIVNVLFYVSGGSTAVGFAAANDSAGV
A0A5A7UAH6 CCHC-type domain-containing protein1.6e-0758.33Show/hide
Query:  VEIKLPVPDTLPTSAESSRSSSSTWVELYIESVYIVNVLFYVSGGSTAVGFAAANDSAGV
        VEI+LPVPDTLPTSAESS+S+SSTW+ELY ESV+ V +LFY         +     SAG+
Subjt:  VEIKLPVPDTLPTSAESSRSSSSTWVELYIESVYIVNVLFYVSGGSTAVGFAAANDSAGV
A0A5D3BTP3 Reverse transcriptase1.0e-0675Show/hide
Query:  FSFLQVEIKLPVPDTLPTSAESSRSSSSTWVELYIESVYI
        FS   VEI+LPVPD LPTSAESSRS+SSTW+ELY ESV++
Subjt:  FSFLQVEIKLPVPDTLPTSAESSRSSSSTWVELYIESVYI
A0A5D3DR18 Gag/pol protein1.6e-0758.33Show/hide
Query:  VEIKLPVPDTLPTSAESSRSSSSTWVELYIESVYIVNVLFYVSGGSTAVGFAAANDSAGV
        VEI+LP+PDTLPTSAESS S+SSTW+ELY ESV+ V +LFY    + A  +     SAG+
Subjt:  VEIKLPVPDTLPTSAESSRSSSSTWVELYIESVYIVNVLFYVSGGSTAVGFAAANDSAGV
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGAACCTCGAATCTGTGTTGTCTGTGTTCGGGGCATTTCTGGACAAATTGGTTGGGAATCCCGTTTTTCATTTCTTCAGGTAGAGATCAAGCTCCCGGTGCCTGA
TACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCCGTCTATATTGTAAATGTTTTGTTCTACGTTTCAGGAGGGT
CAACGGCGGTTGGTTTTGCTGCAGCAAACGATTCTGCTGGGGTTTCACTGAATCTTCTGGACCCTGCGGGAGACGCGACACATCAGCCATTGAATTTTGGTTTCTACGCT
GGGACTAAAAGCGAAATCACCAACGATGTTTTAGACACCACCATGAGATTTCCCCGTTGTCTTGGGGCAGAAGTTGTCGTAGCGTCGCGACGCTACCGCGATTCTGGATT
TTTCCTCGCTGATCACCTAGCGTCGAGACGCTCTAGTCCTAGCGTCGAGACGCTAGGCCTTCTAAAAGCCGATTTTGCGGATTTTTGCCTCCTTTCTTCTTTCTTTTGGG
CTTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGAGAACCTCGAATCTGTGTTGTCTGTGTTCGGGGCATTTCTGGACAAATTGGTTGGGAATCCCGTTTTTCATTTCTTCAGGTAGAGATCAAGCTCCCGGTGCCTGA
TACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCCGTCTATATTGTAAATGTTTTGTTCTACGTTTCAGGAGGGT
CAACGGCGGTTGGTTTTGCTGCAGCAAACGATTCTGCTGGGGTTTCACTGAATCTTCTGGACCCTGCGGGAGACGCGACACATCAGCCATTGAATTTTGGTTTCTACGCT
GGGACTAAAAGCGAAATCACCAACGATGTTTTAGACACCACCATGAGATTTCCCCGTTGTCTTGGGGCAGAAGTTGTCGTAGCGTCGCGACGCTACCGCGATTCTGGATT
TTTCCTCGCTGATCACCTAGCGTCGAGACGCTCTAGTCCTAGCGTCGAGACGCTAGGCCTTCTAAAAGCCGATTTTGCGGATTTTTGCCTCCTTTCTTCTTTCTTTTGGG
CTTTTTAG
Protein sequenceShow/hide protein sequence
MREPRICVVCVRGISGQIGWESRFSFLQVEIKLPVPDTLPTSAESSRSSSSTWVELYIESVYIVNVLFYVSGGSTAVGFAAANDSAGVSLNLLDPAGDATHQPLNFGFYA
GTKSEITNDVLDTTMRFPRCLGAEVVVASRRYRDSGFFLADHLASRRSSPSVETLGLLKADFADFCLLSSFFWAF