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Spg005548 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg005548
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold7:28027956..28030210
RNA-Seq ExpressionSpg005548
SyntenySpg005548
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.0e-1039.01Show/hide
Query:  LFGLSYTEGTKRAQDFRAKQEDLWFSLVFRAYWGVQVESEALFGYISLLTLSILRDNDADVEIELLVPDTLPTSAESSRSSSSS----------------
        LFGL Y EGTKR +  R   +              +++   +F   SL TLS+LRDNDA VEIEL VPDTLPTSAESS S+SS+                
Subjt:  LFGLSYTEGTKRAQDFRAKQEDLWFSLVFRAYWGVQVESEALFGYISLLTLSILRDNDADVEIELLVPDTLPTSAESSRSSSSS----------------

Query:  -------------RFQEGQWVSLDEDDVCWLHAIFRIKLAG
                         G    +  D+VCWLHA+F  K AG
Subjt:  -------------RFQEGQWVSLDEDDVCWLHAIFRIKLAG

KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]2.0e-1065.15Show/hide
Query:  SLLTLSILRDNDADVEIELLVPDTLPTSAESSRSSSSSRFQEGQWVSLDEDDVCWLHAIFRIKLAG
        SL TLS+LRDNDA VEIEL VPDTLPTSAES  S+S S         +  DDVCWLHA+FR K AG
Subjt:  SLLTLSILRDNDADVEIELLVPDTLPTSAESSRSSSSSRFQEGQWVSLDEDDVCWLHAIFRIKLAG

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]6.3e-1261.33Show/hide
Query:  LLTLSILRDNDADVEIELLVPDTLPTSAESSRSSSSSRFQ--------EGQWVS--LDEDDVCWLHAIFRIKLAG
        L TLS+LRDNDA VEIEL VPDTLPTSAESS S+SS+  +        E  W++  + EDDVCWLHA+FR K AG
Subjt:  LLTLSILRDNDADVEIELLVPDTLPTSAESSRSSSSSRFQ--------EGQWVS--LDEDDVCWLHAIFRIKLAG

TYK00848.1 gag/pol protein [Cucumis melo var. makuwa]2.4e-1168.18Show/hide
Query:  SLLTLSILRDNDADVEIELLVPDTLPTSAESSRSSSSSRFQEGQWVSLDEDDVCWLHAIFRIKLAG
        SL TLS+L DNDA VEIELLVPDTLPTSAES RS+S S         +  DDVCWLHAIFR K AG
Subjt:  SLLTLSILRDNDADVEIELLVPDTLPTSAESSRSSSSSRFQEGQWVSLDEDDVCWLHAIFRIKLAG

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]6.3e-1261.33Show/hide
Query:  LLTLSILRDNDADVEIELLVPDTLPTSAESSRSSSSSRFQ--------EGQWVS--LDEDDVCWLHAIFRIKLAG
        L TLS+LRDNDA VEIEL VPDTLPTSAESS S+SS+  +        E  W++  + EDDVCWLHA+FR K AG
Subjt:  LLTLSILRDNDADVEIELLVPDTLPTSAESSRSSSSSRFQ--------EGQWVS--LDEDDVCWLHAIFRIKLAG

TrEMBL top hitse value%identityAlignment
A0A5A7U9X4 DNA/RNA polymerases superfamily protein9.8e-1139.01Show/hide
Query:  LFGLSYTEGTKRAQDFRAKQEDLWFSLVFRAYWGVQVESEALFGYISLLTLSILRDNDADVEIELLVPDTLPTSAESSRSSSSS----------------
        LFGL Y EGTKR +  R   +              +++   +F   SL TLS+LRDNDA VEIEL VPDTLPTSAESS S+SS+                
Subjt:  LFGLSYTEGTKRAQDFRAKQEDLWFSLVFRAYWGVQVESEALFGYISLLTLSILRDNDADVEIELLVPDTLPTSAESSRSSSSS----------------

Query:  -------------RFQEGQWVSLDEDDVCWLHAIFRIKLAG
                         G    +  D+VCWLHA+F  K AG
Subjt:  -------------RFQEGQWVSLDEDDVCWLHAIFRIKLAG

A0A5A7VMG9 Reverse transcriptase3.1e-1261.33Show/hide
Query:  LLTLSILRDNDADVEIELLVPDTLPTSAESSRSSSSSRFQ--------EGQWVS--LDEDDVCWLHAIFRIKLAG
        L TLS+LRDNDA VEIEL VPDTLPTSAESS S+SS+  +        E  W++  + EDDVCWLHA+FR K AG
Subjt:  LLTLSILRDNDADVEIELLVPDTLPTSAESSRSSSSSRFQ--------EGQWVS--LDEDDVCWLHAIFRIKLAG

A0A5D3BAD1 Retrotrans_gag domain-containing protein9.8e-1165.15Show/hide
Query:  SLLTLSILRDNDADVEIELLVPDTLPTSAESSRSSSSSRFQEGQWVSLDEDDVCWLHAIFRIKLAG
        SL TLS+LRDNDA VEIEL VPDTLPTSAES  S+S S         +  DDVCWLHA+FR K AG
Subjt:  SLLTLSILRDNDADVEIELLVPDTLPTSAESSRSSSSSRFQEGQWVSLDEDDVCWLHAIFRIKLAG

A0A5D3BP54 Gag/pol protein1.2e-1168.18Show/hide
Query:  SLLTLSILRDNDADVEIELLVPDTLPTSAESSRSSSSSRFQEGQWVSLDEDDVCWLHAIFRIKLAG
        SL TLS+L DNDA VEIELLVPDTLPTSAES RS+S S         +  DDVCWLHAIFR K AG
Subjt:  SLLTLSILRDNDADVEIELLVPDTLPTSAESSRSSSSSRFQEGQWVSLDEDDVCWLHAIFRIKLAG

A0A5D3DX39 Reverse transcriptase3.1e-1261.33Show/hide
Query:  LLTLSILRDNDADVEIELLVPDTLPTSAESSRSSSSSRFQ--------EGQWVS--LDEDDVCWLHAIFRIKLAG
        L TLS+LRDNDA VEIEL VPDTLPTSAESS S+SS+  +        E  W++  + EDDVCWLHA+FR K AG
Subjt:  LLTLSILRDNDADVEIELLVPDTLPTSAESSRSSSSSRFQ--------EGQWVS--LDEDDVCWLHAIFRIKLAG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAACCTCTGGTTTTTTATTCGGTTTGAGTTACACAGAAGGAACTAAGAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGGTTTTTCGAGC
ATACTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGTTATATTTCGTTGTTGACGTTGAGTATACTCCGTGACAACGATGCTGACGTCGAGATCGAGCTCCTGGTGC
CTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTCAAGGTTTCAGGAGGGTCAATGGGTATCGTTAGATGAGGACGATGTCTGTTGGCTTCACGCC
ATCTTCCGGATTAAGCTAGCAGGT
mRNA sequenceShow/hide mRNA sequence
ATGCCAACCTCTGGTTTTTTATTCGGTTTGAGTTACACAGAAGGAACTAAGAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGGTTTTTCGAGC
ATACTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGTTATATTTCGTTGTTGACGTTGAGTATACTCCGTGACAACGATGCTGACGTCGAGATCGAGCTCCTGGTGC
CTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTCAAGGTTTCAGGAGGGTCAATGGGTATCGTTAGATGAGGACGATGTCTGTTGGCTTCACGCC
ATCTTCCGGATTAAGCTAGCAGGT
Protein sequenceShow/hide protein sequence
MPTSGFLFGLSYTEGTKRAQDFRAKQEDLWFSLVFRAYWGVQVESEALFGYISLLTLSILRDNDADVEIELLVPDTLPTSAESSRSSSSSRFQEGQWVSLDEDDVCWLHA
IFRIKLAG