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Spg005551 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg005551
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTransposon Ty3-I Gag-Pol polyprotein
Genome locationscaffold7:27779269..27783982
RNA-Seq ExpressionSpg005551
SyntenySpg005551
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008233 - peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051909.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]2.3e-2875.27Show/hide
Query:  PSASSRSDTDSINNPLHVPEGPITRSKEKKIQEAFTLHVQKLANAHQEAKNFEPKFLYNASLASQEENGVKMAREKSCILEDGTGDEKSVHNL
        PS     D DS+NN LHVPEGPIT+ K KKIQEAFTLHVQKLANA +E KNFE KFLYN S ASQEE+GVKMAREK C  EDGTG+EKSV NL
Subjt:  PSASSRSDTDSINNPLHVPEGPITRSKEKKIQEAFTLHVQKLANAHQEAKNFEPKFLYNASLASQEENGVKMAREKSCILEDGTGDEKSVHNL

KAA0067206.1 hypothetical protein E6C27_scaffold418G00080 [Cucumis melo var. makuwa]3.0e-2875.27Show/hide
Query:  PSASSRSDTDSINNPLHVPEGPITRSKEKKIQEAFTLHVQKLANAHQEAKNFEPKFLYNASLASQEENGVKMAREKSCILEDGTGDEKSVHNL
        PS     D DSINN LHVPEGPIT+ K KKIQEAFTLHVQKL NA +E KNFEPKFLYN S ASQEE+ +KMA EK C LEDGTGDEKSV NL
Subjt:  PSASSRSDTDSINNPLHVPEGPITRSKEKKIQEAFTLHVQKLANAHQEAKNFEPKFLYNASLASQEENGVKMAREKSCILEDGTGDEKSVHNL

TYK02449.1 F15O4.13 [Cucumis melo var. makuwa]6.8e-2875.27Show/hide
Query:  PSASSRSDTDSINNPLHVPEGPITRSKEKKIQEAFTLHVQKLANAHQEAKNFEPKFLYNASLASQEENGVKMAREKSCILEDGTGDEKSVHNL
        PS     D DS+NN LHVPEGPIT+ K KKIQEAFTLHVQKLANA +E KNFE KFLYN S ASQEE+GVKMAREK C LEDGT +EKSV NL
Subjt:  PSASSRSDTDSINNPLHVPEGPITRSKEKKIQEAFTLHVQKLANAHQEAKNFEPKFLYNASLASQEENGVKMAREKSCILEDGTGDEKSVHNL

TYK08102.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]6.8e-2868.93Show/hide
Query:  PSASSRSDTDSINNPLHVPEGPITRSKEKKIQEAFTLHVQKLANAHQEAKNFEPKFLYNASLASQEENGVKMAREKSCILEDGTGDEKS---VHNLFDVQ
        PS     D DS+NN LHVPEGPIT+ K KKIQEAFTLHVQKLANA +E KNFE KFLYN S ASQEE+GVKMAREK C LEDGTG+EK    + + FD++
Subjt:  PSASSRSDTDSINNPLHVPEGPITRSKEKKIQEAFTLHVQKLANAHQEAKNFEPKFLYNASLASQEENGVKMAREKSCILEDGTGDEKS---VHNLFDVQ

Query:  SIH
         IH
Subjt:  SIH

TYK26105.1 F15O4.13 [Cucumis melo var. makuwa]6.8e-2875.27Show/hide
Query:  PSASSRSDTDSINNPLHVPEGPITRSKEKKIQEAFTLHVQKLANAHQEAKNFEPKFLYNASLASQEENGVKMAREKSCILEDGTGDEKSVHNL
        PS     D DS+NN LHVPEGPIT+ K KKIQEAFTLHVQKLANA +E KNFE KFLYN S ASQEE+ VKMAREK C LEDGTG+EKSV NL
Subjt:  PSASSRSDTDSINNPLHVPEGPITRSKEKKIQEAFTLHVQKLANAHQEAKNFEPKFLYNASLASQEENGVKMAREKSCILEDGTGDEKSVHNL

TrEMBL top hitse value%identityAlignment
A0A5A7UEI2 Transposon Ty3-I Gag-Pol polyprotein1.1e-2875.27Show/hide
Query:  PSASSRSDTDSINNPLHVPEGPITRSKEKKIQEAFTLHVQKLANAHQEAKNFEPKFLYNASLASQEENGVKMAREKSCILEDGTGDEKSVHNL
        PS     D DS+NN LHVPEGPIT+ K KKIQEAFTLHVQKLANA +E KNFE KFLYN S ASQEE+GVKMAREK C  EDGTG+EKSV NL
Subjt:  PSASSRSDTDSINNPLHVPEGPITRSKEKKIQEAFTLHVQKLANAHQEAKNFEPKFLYNASLASQEENGVKMAREKSCILEDGTGDEKSVHNL

A0A5A7VL78 RT_RNaseH_2 domain-containing protein1.5e-2875.27Show/hide
Query:  PSASSRSDTDSINNPLHVPEGPITRSKEKKIQEAFTLHVQKLANAHQEAKNFEPKFLYNASLASQEENGVKMAREKSCILEDGTGDEKSVHNL
        PS     D DSINN LHVPEGPIT+ K KKIQEAFTLHVQKL NA +E KNFEPKFLYN S ASQEE+ +KMA EK C LEDGTGDEKSV NL
Subjt:  PSASSRSDTDSINNPLHVPEGPITRSKEKKIQEAFTLHVQKLANAHQEAKNFEPKFLYNASLASQEENGVKMAREKSCILEDGTGDEKSVHNL

A0A5D3BWE8 F15O4.133.3e-2875.27Show/hide
Query:  PSASSRSDTDSINNPLHVPEGPITRSKEKKIQEAFTLHVQKLANAHQEAKNFEPKFLYNASLASQEENGVKMAREKSCILEDGTGDEKSVHNL
        PS     D DS+NN LHVPEGPIT+ K KKIQEAFTLHVQKLANA +E KNFE KFLYN S ASQEE+GVKMAREK C LEDGT +EKSV NL
Subjt:  PSASSRSDTDSINNPLHVPEGPITRSKEKKIQEAFTLHVQKLANAHQEAKNFEPKFLYNASLASQEENGVKMAREKSCILEDGTGDEKSVHNL

A0A5D3C9X5 Transposon Ty3-I Gag-Pol polyprotein3.3e-2868.93Show/hide
Query:  PSASSRSDTDSINNPLHVPEGPITRSKEKKIQEAFTLHVQKLANAHQEAKNFEPKFLYNASLASQEENGVKMAREKSCILEDGTGDEKS---VHNLFDVQ
        PS     D DS+NN LHVPEGPIT+ K KKIQEAFTLHVQKLANA +E KNFE KFLYN S ASQEE+GVKMAREK C LEDGTG+EK    + + FD++
Subjt:  PSASSRSDTDSINNPLHVPEGPITRSKEKKIQEAFTLHVQKLANAHQEAKNFEPKFLYNASLASQEENGVKMAREKSCILEDGTGDEKS---VHNLFDVQ

Query:  SIH
         IH
Subjt:  SIH

A0A5D3DRJ1 F15O4.133.3e-2875.27Show/hide
Query:  PSASSRSDTDSINNPLHVPEGPITRSKEKKIQEAFTLHVQKLANAHQEAKNFEPKFLYNASLASQEENGVKMAREKSCILEDGTGDEKSVHNL
        PS     D DS+NN LHVPEGPIT+ K KKIQEAFTLHVQKLANA +E KNFE KFLYN S ASQEE+ VKMAREK C LEDGTG+EKSV NL
Subjt:  PSASSRSDTDSINNPLHVPEGPITRSKEKKIQEAFTLHVQKLANAHQEAKNFEPKFLYNASLASQEENGVKMAREKSCILEDGTGDEKSVHNL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGACTCAATATGCCTTCCTTTTTGGGGACAAGACCGAGTGGGAGGCTGGGGACATGACAACACAAGAAGGAATTCACTCCTTCTCACTTCTAGGAGAAGTAGATGA
GTGTCCATTAGGTCCCTCTGCTAGCTCGCGTTCTGATACGGATTCAATCAATAATCCATTGCATGTACCTGAAGGACCAATCACTAGGAGCAAGGAAAAGAAGATACAAG
AGGCTTTCACATTGCATGTTCAAAAGCTAGCAAATGCACATCAAGAGGCAAAGAATTTTGAACCCAAATTTTTGTATAATGCTAGTTTAGCAAGTCAAGAAGAGAATGGG
GTCAAGATGGCACGGGAAAAGTCGTGTATTTTGGAAGATGGCACGGGGGACGAAAAAAGTGTGCATAATTTGTTTGATGTTCAATCGATTCATTGGATTAGTTTTGATCA
ATCTAATTCTGAAGATCCTAGAAGGACCTCTAGCTTTGTAAGCTTAAGCATATTGGACGCTTATCACGTTCTTGATATTTCAGAGACGAGAACGACGTGGGAGGAAAATT
ACAAAACGAGATTTAAATCAAGTTTTGCTGCTACGTCCCTATATTCACAACGTGAGGTTCATGCTCGGCTTCGTATCGCCTTAGGCGCGGCCTCCCATCGGAAAGTGTTT
GCATGGATCAATAACAAGGTGAATGGGACAAATGTCTATAGTAAGTGGGAGCGGGGCACGTGTCAACGTATCTCTCGGTCTCCGCCCTTAGTTCGCACTGTGAGAGTCCT
ATGGTCCGCCAGCGTGTTGCCCTGGCGCAACCATCCCTTCGGAGGGCCTGATCATAGGATTCGGAACACCGTGAACTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCGACTCAATATGCCTTCCTTTTTGGGGACAAGACCGAGTGGGAGGCTGGGGACATGACAACACAAGAAGGAATTCACTCCTTCTCACTTCTAGGAGAAGTAGATGA
GTGTCCATTAGGTCCCTCTGCTAGCTCGCGTTCTGATACGGATTCAATCAATAATCCATTGCATGTACCTGAAGGACCAATCACTAGGAGCAAGGAAAAGAAGATACAAG
AGGCTTTCACATTGCATGTTCAAAAGCTAGCAAATGCACATCAAGAGGCAAAGAATTTTGAACCCAAATTTTTGTATAATGCTAGTTTAGCAAGTCAAGAAGAGAATGGG
GTCAAGATGGCACGGGAAAAGTCGTGTATTTTGGAAGATGGCACGGGGGACGAAAAAAGTGTGCATAATTTGTTTGATGTTCAATCGATTCATTGGATTAGTTTTGATCA
ATCTAATTCTGAAGATCCTAGAAGGACCTCTAGCTTTGTAAGCTTAAGCATATTGGACGCTTATCACGTTCTTGATATTTCAGAGACGAGAACGACGTGGGAGGAAAATT
ACAAAACGAGATTTAAATCAAGTTTTGCTGCTACGTCCCTATATTCACAACGTGAGGTTCATGCTCGGCTTCGTATCGCCTTAGGCGCGGCCTCCCATCGGAAAGTGTTT
GCATGGATCAATAACAAGGTGAATGGGACAAATGTCTATAGTAAGTGGGAGCGGGGCACGTGTCAACGTATCTCTCGGTCTCCGCCCTTAGTTCGCACTGTGAGAGTCCT
ATGGTCCGCCAGCGTGTTGCCCTGGCGCAACCATCCCTTCGGAGGGCCTGATCATAGGATTCGGAACACCGTGAACTCTTGA
Protein sequenceShow/hide protein sequence
MPTQYAFLFGDKTEWEAGDMTTQEGIHSFSLLGEVDECPLGPSASSRSDTDSINNPLHVPEGPITRSKEKKIQEAFTLHVQKLANAHQEAKNFEPKFLYNASLASQEENG
VKMAREKSCILEDGTGDEKSVHNLFDVQSIHWISFDQSNSEDPRRTSSFVSLSILDAYHVLDISETRTTWEENYKTRFKSSFAATSLYSQREVHARLRIALGAASHRKVF
AWINNKVNGTNVYSKWERGTCQRISRSPPLVRTVRVLWSASVLPWRNHPFGGPDHRIRNTVNS