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Spg005568 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg005568
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold7:25424410..25426693
RNA-Seq ExpressionSpg005568
SyntenySpg005568
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025985.1 reverse transcriptase [Cucumis melo var. makuwa]2.1e-0952.24Show/hide
Query:  YLVEIELPMPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGGVTTWYQSS
        + VEIELP+PDTLPT         ++++  G      EDDV WLH +FR K  GG GGGV+TWYQSS
Subjt:  YLVEIELPMPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGGVTTWYQSS

KAA0037515.1 uncharacterized protein E6C27_scaffold277G001260 [Cucumis melo var. makuwa]2.4e-1062.5Show/hide
Query:  LVEIELPMPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGGVTTWYQ
        +VEIELP+ DTLP SAESS S+S S         + EDDV WLH +FR K AGG GGGVTTWYQ
Subjt:  LVEIELPMPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGGVTTWYQ

KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]4.9e-1151.65Show/hide
Query:  YLVEIELPMPDTLPTSAESSRSSSSSTFQ---EGQRVSL----------------------EEDDVRWLHAIFRTKLAGGLGGGVTTWYQS
        +LVEIELP+PD LPTSAESSRS+SS+  +   E   V +                        DDV WLHAIFR K AGG GGGVTTWYQS
Subjt:  YLVEIELPMPDTLPTSAESSRSSSSSTFQ---EGQRVSL----------------------EEDDVRWLHAIFRTKLAGGLGGGVTTWYQS

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]4.9e-1151.65Show/hide
Query:  YLVEIELPMPDTLPTSAESSRSSSSSTFQ---EGQRVSL----------------------EEDDVRWLHAIFRTKLAGGLGGGVTTWYQS
        +LVEIELP+PD LPTSAESSRS+SS+  +   E   V +                        DDV WLHAIFR K AGG GGGVTTWYQS
Subjt:  YLVEIELPMPDTLPTSAESSRSSSSSTFQ---EGQRVSL----------------------EEDDVRWLHAIFRTKLAGGLGGGVTTWYQS

TYK14494.1 uncharacterized protein E5676_scaffold15G00050 [Cucumis melo var. makuwa]1.9e-1061.54Show/hide
Query:  LVEIELPMPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGGVTTWYQS
        +VEIELP+ DTLPTSAESS S+S S         +  DDV WLH++FR K A G GGGVTTWYQS
Subjt:  LVEIELPMPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGGVTTWYQS

TrEMBL top hitse value%identityAlignment
A0A5A7SNE5 Reverse transcriptase1.0e-0952.24Show/hide
Query:  YLVEIELPMPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGGVTTWYQSS
        + VEIELP+PDTLPT         ++++  G      EDDV WLH +FR K  GG GGGV+TWYQSS
Subjt:  YLVEIELPMPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGGVTTWYQSS

A0A5A7T7M6 Reverse transcriptase2.4e-1151.65Show/hide
Query:  YLVEIELPMPDTLPTSAESSRSSSSSTFQ---EGQRVSL----------------------EEDDVRWLHAIFRTKLAGGLGGGVTTWYQS
        +LVEIELP+PD LPTSAESSRS+SS+  +   E   V +                        DDV WLHAIFR K AGG GGGVTTWYQS
Subjt:  YLVEIELPMPDTLPTSAESSRSSSSSTFQ---EGQRVSL----------------------EEDDVRWLHAIFRTKLAGGLGGGVTTWYQS

A0A5D3BSA6 Retrotrans_gag domain-containing protein1.2e-1062.5Show/hide
Query:  LVEIELPMPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGGVTTWYQ
        +VEIELP+ DTLP SAESS S+S S         + EDDV WLH +FR K AGG GGGVTTWYQ
Subjt:  LVEIELPMPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGGVTTWYQ

A0A5D3BTP3 Reverse transcriptase2.4e-1151.65Show/hide
Query:  YLVEIELPMPDTLPTSAESSRSSSSSTFQ---EGQRVSL----------------------EEDDVRWLHAIFRTKLAGGLGGGVTTWYQS
        +LVEIELP+PD LPTSAESSRS+SS+  +   E   V +                        DDV WLHAIFR K AGG GGGVTTWYQS
Subjt:  YLVEIELPMPDTLPTSAESSRSSSSSTFQ---EGQRVSL----------------------EEDDVRWLHAIFRTKLAGGLGGGVTTWYQS

A0A5D3CU23 Retrotrans_gag domain-containing protein9.0e-1161.54Show/hide
Query:  LVEIELPMPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGGVTTWYQS
        +VEIELP+ DTLPTSAESS S+S S         +  DDV WLH++FR K A G GGGVTTWYQS
Subjt:  LVEIELPMPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGGVTTWYQS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAAGTTTATGGTTTTTGAAATGGAAAACAGAGCACAGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGAATTCTGATGTGTACAAGTT
GATTCAGAAGCTCTATTTGGTAGAGATCGAGCTCCCGATGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTCTACGTTTCAGGAGGGTCAAC
GGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCTGGGAGGGGGTGTGACAACTTGGTATCAGAGCAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGAAGTTTATGGTTTTTGAAATGGAAAACAGAGCACAGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGAATTCTGATGTGTACAAGTT
GATTCAGAAGCTCTATTTGGTAGAGATCGAGCTCCCGATGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTCTACGTTTCAGGAGGGTCAAC
GGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCTGGGAGGGGGTGTGACAACTTGGTATCAGAGCAGTTAG
Protein sequenceShow/hide protein sequence
MRSLWFLKWKTEHRIFEQTRRISGVLWCFENSDVYKLIQKLYLVEIELPMPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGGVTTWYQSS