; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg005624 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg005624
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationscaffold8:19671810..19674071
RNA-Seq ExpressionSpg005624
SyntenySpg005624
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0065961.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.9e-0730.24Show/hide
Query:  MTPKKAPTKVTTLSDSYTKLVTRSHSKGIEIKEDQMPLIVASRISKLIEESSKDKLVIKDNPLFDTFTPTFDRSKDAPNRDVMSVMMRTICSGNAPANGD
        MT  K  +K +  SD+YT+ VT S SKGI  K+DQ  +I  S + +L+ E SK ++VIK+NPL+D F     +SK   + DVMSVMM  +    A A  +
Subjt:  MTPKKAPTKVTTLSDSYTKLVTRSHSKGIEIKEDQMPLIVASRISKLIEESSKDKLVIKDNPLFDTFTPTFDRSKDAPNRDVMSVMMRTICSGNAPANGD

Query:  KELAEQRVEVADLRPHLVLRMWKLRLNCARKLIRKVAPTEERIVKESFRGECARKRKLKAEILCMHLDLRITQRKMHPRCGRNWAFRQNTEIRGICTESS
        +++            +L++++ K  LN      R V+  E   +KE  +GE       +   L +    R+T+  +   C +  A + +     I ++ +
Subjt:  KELAEQRVEVADLRPHLVLRMWKLRLNCARKLIRKVAPTEERIVKESFRGECARKRKLKAEILCMHLDLRITQRKMHPRCGRNWAFRQNTEIRGICTESS

Query:  KNPQF
        K+  F
Subjt:  KNPQF

KAA0066578.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]7.2e-0733.55Show/hide
Query:  MTPKKAPTKVTTLSDSYTKLVTRSHSKGIEIKEDQMPLIVASRISKLIEESSKDKLVIKDNPLFDTFTPTFDRSKDAPNRDVMSVMMRTICSGNAPANGD
        M  KKA +K +  SD+Y   +TRS SKGI  ++DQ    VA  I K + ES K  + +K+NPL+D    T  +SK     DVMSVMM  I +  A  + +
Subjt:  MTPKKAPTKVTTLSDSYTKLVTRSHSKGIEIKEDQMPLIVASRISKLIEESSKDKLVIKDNPLFDTFTPTFDRSKDAPNRDVMSVMMRTICSGNAPANGD

Query:  KELAEQRVEVADLRPHLVL----RMW-KLRLNCARKLIRKVAPTEERIVKES
        +++    ++V + R H +     +MW +     ++ L+ K    E+ +V+E+
Subjt:  KELAEQRVEVADLRPHLVL----RMW-KLRLNCARKLIRKVAPTEERIVKES

TYK09810.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]7.2e-0743.3Show/hide
Query:  MTPKKAPTKVTTLSDSYTKLVTRSHSKGIEIKEDQMPLIVASRISKLIEESSKDKLVIKDNPLFDTFTPTFDRSKDAPNRDVMSVMMRTICSGNAPA
        M  KK+ +K +  S++Y   +T + SKGI  ++DQ  +IV S I K + ES KD +VIK+NPL+D F  +F +SK   + DVMSV+M  I +  A A
Subjt:  MTPKKAPTKVTTLSDSYTKLVTRSHSKGIEIKEDQMPLIVASRISKLIEESSKDKLVIKDNPLFDTFTPTFDRSKDAPNRDVMSVMMRTICSGNAPA

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]9.5e-0739.66Show/hide
Query:  MTPKKAPTKVTTLSDSYTKLVTRSHSKGIEIKEDQMPLIVASRISKLIEESSKDKLVIKDNPLFDTFTPTFDRSKDAPNRDVMSVMMRTICSGNAPANGD
        M  KKA +K +  SD+YT  +TRS SKGI   +DQ   I A  I K + ES K  +VIK+NPL++ +     RS    + DVMSVMM  +    A A  +
Subjt:  MTPKKAPTKVTTLSDSYTKLVTRSHSKGIEIKEDQMPLIVASRISKLIEESSKDKLVIKDNPLFDTFTPTFDRSKDAPNRDVMSVMMRTICSGNAPANGD

Query:  KELAEQRVEVADLRPH
        +++    ++V D R H
Subjt:  KELAEQRVEVADLRPH

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]9.5e-0739.66Show/hide
Query:  MTPKKAPTKVTTLSDSYTKLVTRSHSKGIEIKEDQMPLIVASRISKLIEESSKDKLVIKDNPLFDTFTPTFDRSKDAPNRDVMSVMMRTICSGNAPANGD
        M  KKA +K +  SD+YT  +TRS SKGI   +DQ   I A  I K + ES K  +VIK+NPL++ +     RS    + DVMSVMM  +    A A  +
Subjt:  MTPKKAPTKVTTLSDSYTKLVTRSHSKGIEIKEDQMPLIVASRISKLIEESSKDKLVIKDNPLFDTFTPTFDRSKDAPNRDVMSVMMRTICSGNAPANGD

Query:  KELAEQRVEVADLRPH
        +++    ++V D R H
Subjt:  KELAEQRVEVADLRPH

TrEMBL top hitse value%identityAlignment
A0A5A7V1D2 Ty3-gypsy retrotransposon protein6.0e-0748.81Show/hide
Query:  KKAPTKVTTLSDSYTKLVTRSHSKGIEIKEDQMPLIVASRISKLIEESSKDKLVIKDNPLFDTFTPTFDRSKDAPNRDVMSVMM
        KK  +K +  SD YT  +TRS SKGI  ++DQ    VA  I K + ESSK  +VIK+NPL+D    TF +SK   + D+MSVMM
Subjt:  KKAPTKVTTLSDSYTKLVTRSHSKGIEIKEDQMPLIVASRISKLIEESSKDKLVIKDNPLFDTFTPTFDRSKDAPNRDVMSVMM

A0A5A7VFQ8 Ty3-gypsy retrotransposon protein3.5e-0733.55Show/hide
Query:  MTPKKAPTKVTTLSDSYTKLVTRSHSKGIEIKEDQMPLIVASRISKLIEESSKDKLVIKDNPLFDTFTPTFDRSKDAPNRDVMSVMMRTICSGNAPANGD
        M  KKA +K +  SD+Y   +TRS SKGI  ++DQ    VA  I K + ES K  + +K+NPL+D    T  +SK     DVMSVMM  I +  A  + +
Subjt:  MTPKKAPTKVTTLSDSYTKLVTRSHSKGIEIKEDQMPLIVASRISKLIEESSKDKLVIKDNPLFDTFTPTFDRSKDAPNRDVMSVMMRTICSGNAPANGD

Query:  KELAEQRVEVADLRPHLVL----RMW-KLRLNCARKLIRKVAPTEERIVKES
        +++    ++V + R H +     +MW +     ++ L+ K    E+ +V+E+
Subjt:  KELAEQRVEVADLRPHLVL----RMW-KLRLNCARKLIRKVAPTEERIVKES

A0A5A7VJT9 Ty3-gypsy retrotransposon protein9.2e-0830.24Show/hide
Query:  MTPKKAPTKVTTLSDSYTKLVTRSHSKGIEIKEDQMPLIVASRISKLIEESSKDKLVIKDNPLFDTFTPTFDRSKDAPNRDVMSVMMRTICSGNAPANGD
        MT  K  +K +  SD+YT+ VT S SKGI  K+DQ  +I  S + +L+ E SK ++VIK+NPL+D F     +SK   + DVMSVMM  +    A A  +
Subjt:  MTPKKAPTKVTTLSDSYTKLVTRSHSKGIEIKEDQMPLIVASRISKLIEESSKDKLVIKDNPLFDTFTPTFDRSKDAPNRDVMSVMMRTICSGNAPANGD

Query:  KELAEQRVEVADLRPHLVLRMWKLRLNCARKLIRKVAPTEERIVKESFRGECARKRKLKAEILCMHLDLRITQRKMHPRCGRNWAFRQNTEIRGICTESS
        +++            +L++++ K  LN      R V+  E   +KE  +GE       +   L +    R+T+  +   C +  A + +     I ++ +
Subjt:  KELAEQRVEVADLRPHLVLRMWKLRLNCARKLIRKVAPTEERIVKESFRGECARKRKLKAEILCMHLDLRITQRKMHPRCGRNWAFRQNTEIRGICTESS

Query:  KNPQF
        K+  F
Subjt:  KNPQF

A0A5D3BSX5 Ty3-gypsy retrotransposon protein6.0e-0748.81Show/hide
Query:  KKAPTKVTTLSDSYTKLVTRSHSKGIEIKEDQMPLIVASRISKLIEESSKDKLVIKDNPLFDTFTPTFDRSKDAPNRDVMSVMM
        KK  +K +  SD YT  +TRS SKGI  ++DQ    VA  I K + ESSK  +VIK+NPL+D    TF +SK   + D+MSVMM
Subjt:  KKAPTKVTTLSDSYTKLVTRSHSKGIEIKEDQMPLIVASRISKLIEESSKDKLVIKDNPLFDTFTPTFDRSKDAPNRDVMSVMM

A0A5D3CEN8 Ty3-gypsy retrotransposon protein3.5e-0743.3Show/hide
Query:  MTPKKAPTKVTTLSDSYTKLVTRSHSKGIEIKEDQMPLIVASRISKLIEESSKDKLVIKDNPLFDTFTPTFDRSKDAPNRDVMSVMMRTICSGNAPA
        M  KK+ +K +  S++Y   +T + SKGI  ++DQ  +IV S I K + ES KD +VIK+NPL+D F  +F +SK   + DVMSV+M  I +  A A
Subjt:  MTPKKAPTKVTTLSDSYTKLVTRSHSKGIEIKEDQMPLIVASRISKLIEESSKDKLVIKDNPLFDTFTPTFDRSKDAPNRDVMSVMMRTICSGNAPA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACACCAAAGAAAGCTCCCACAAAGGTTACAACATTGAGTGACTCTTACACAAAACTTGTCACCCGTAGTCATTCTAAAGGAATTGAAATCAAGGAGGATCAGATGCC
TCTCATTGTTGCAAGTAGGATTTCGAAACTGATTGAGGAATCCTCCAAAGACAAGCTTGTTATCAAGGACAACCCATTATTCGACACATTCACTCCGACCTTTGATAGAT
CGAAGGATGCACCAAATCGTGACGTGATGTCTGTTATGATGAGGACAATTTGTAGTGGAAATGCGCCCGCAAATGGAGATAAAGAGTTAGCAGAGCAAAGAGTTGAAGTT
GCAGATTTGCGCCCACATTTGGTCCTGAGAATGTGGAAATTGCGTTTGAATTGCGCCCGCAAACTGATAAGAAAAGTAGCCCCAACTGAAGAAAGAATTGTCAAGGAGTC
TTTTCGAGGAGAATGTGCCCGCAAGAGGAAGTTAAAAGCTGAAATATTGTGCATGCATCTAGACTTGAGGATAACACAGAGGAAAATGCACCCGAGATGCGGCCGCAACT
GGGCTTTCCGACAAAATACCGAGATTCGTGGGATTTGCACAGAATCATCCAAAAATCCCCAATTCGGCATCAAATCTCAGAGGATCGTGGATTCTTACCTTCTAAGGCCT
TCTCACACTGATCTCGGCAGTCAACCTTACCTTCCACGGTCTATAAAAGGGGACTAA
mRNA sequenceShow/hide mRNA sequence
ATGACACCAAAGAAAGCTCCCACAAAGGTTACAACATTGAGTGACTCTTACACAAAACTTGTCACCCGTAGTCATTCTAAAGGAATTGAAATCAAGGAGGATCAGATGCC
TCTCATTGTTGCAAGTAGGATTTCGAAACTGATTGAGGAATCCTCCAAAGACAAGCTTGTTATCAAGGACAACCCATTATTCGACACATTCACTCCGACCTTTGATAGAT
CGAAGGATGCACCAAATCGTGACGTGATGTCTGTTATGATGAGGACAATTTGTAGTGGAAATGCGCCCGCAAATGGAGATAAAGAGTTAGCAGAGCAAAGAGTTGAAGTT
GCAGATTTGCGCCCACATTTGGTCCTGAGAATGTGGAAATTGCGTTTGAATTGCGCCCGCAAACTGATAAGAAAAGTAGCCCCAACTGAAGAAAGAATTGTCAAGGAGTC
TTTTCGAGGAGAATGTGCCCGCAAGAGGAAGTTAAAAGCTGAAATATTGTGCATGCATCTAGACTTGAGGATAACACAGAGGAAAATGCACCCGAGATGCGGCCGCAACT
GGGCTTTCCGACAAAATACCGAGATTCGTGGGATTTGCACAGAATCATCCAAAAATCCCCAATTCGGCATCAAATCTCAGAGGATCGTGGATTCTTACCTTCTAAGGCCT
TCTCACACTGATCTCGGCAGTCAACCTTACCTTCCACGGTCTATAAAAGGGGACTAA
Protein sequenceShow/hide protein sequence
MTPKKAPTKVTTLSDSYTKLVTRSHSKGIEIKEDQMPLIVASRISKLIEESSKDKLVIKDNPLFDTFTPTFDRSKDAPNRDVMSVMMRTICSGNAPANGDKELAEQRVEV
ADLRPHLVLRMWKLRLNCARKLIRKVAPTEERIVKESFRGECARKRKLKAEILCMHLDLRITQRKMHPRCGRNWAFRQNTEIRGICTESSKNPQFGIKSQRIVDSYLLRP
SHTDLGSQPYLPRSIKGD