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Spg005649 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg005649
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description40S ribosomal protein S13
Genome locationscaffold8:20908505..20912679
RNA-Seq ExpressionSpg005649
SyntenySpg005649
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005829 - cytosol (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000589 - Ribosomal protein S15
IPR009068 - S15/NS1, RNA-binding
IPR023029 - Ribosomal protein S15P


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA7047311.1 unnamed protein product [Microthlaspi erraticum]2.8e-2156.03Show/hide
Query:  WPKEKNREIDESKTKESSGLFEDNWMQGV--DKKGRPIV--VGYGYVIFALEKIWLAPEIPKDFCHLIKKVVSIRKHLQRNRKDNDSKFRLILVESRIHR
        W K  ++++DES  K +      + +  +  D  G P V  V    ++  L+   LAPEIP+D  HLIKK V+IRKHL+RNRKD DSKFRLILVESRIHR
Subjt:  WPKEKNREIDESKTKESSGLFEDNWMQGV--DKKGRPIV--VGYGYVIFALEKIWLAPEIPKDFCHLIKKVVSIRKHLQRNRKDNDSKFRLILVESRIHR

Query:  LAWYYKKTKKLPPVWK
        LA YYKKTKKLPPVWK
Subjt:  LAWYYKKTKKLPPVWK

EXC17873.1 40S ribosomal protein S13 [Morus notabilis]2.1e-2163.27Show/hide
Query:  KESSGLFEDNWMQGVDKKGRPIVVGYGYVIFALEKIWLAPEIPKDFCHLIKKVVSIRKHLQRNRKDNDSKFRLILVESRIHRLAWYYKKTKKLPPVWK
        K SS   E+N  +   K   P  +G    +   +   LAPEIP+D  HLIKK VSIRKHL+RNRKD DSKFRLILVESRIHRLA YYKKTKKLPPVWK
Subjt:  KESSGLFEDNWMQGVDKKGRPIVVGYGYVIFALEKIWLAPEIPKDFCHLIKKVVSIRKHLQRNRKDNDSKFRLILVESRIHRLAWYYKKTKKLPPVWK

KAF3581922.1 hypothetical protein DY000_02032103 [Brassica cretica]2.8e-2156.03Show/hide
Query:  WPKEKNREIDESKTKESSGLFEDNWMQGV--DKKGRPIV--VGYGYVIFALEKIWLAPEIPKDFCHLIKKVVSIRKHLQRNRKDNDSKFRLILVESRIHR
        W K  ++++DES  K +      + +  +  D  G P V  V    ++  L+   LAPEIP+D  HLIKK V+IRKHL+RNRKD DSKFRLILVESRIHR
Subjt:  WPKEKNREIDESKTKESSGLFEDNWMQGV--DKKGRPIV--VGYGYVIFALEKIWLAPEIPKDFCHLIKKVVSIRKHLQRNRKDNDSKFRLILVESRIHR

Query:  LAWYYKKTKKLPPVWK
        LA YYKKTKKLPPVWK
Subjt:  LAWYYKKTKKLPPVWK

KAG6390141.1 hypothetical protein SASPL_151623 [Salvia splendens]1.1e-2276.62Show/hide
Query:  IVVGYGYVIFALEKIWLAPEIPKDFCHLIKKVVSIRKHLQRNRKDNDSKFRLILVESRIHRLAWYYKKTKKLPPVWK
        I+ G+G V+  L  +WLAPEIP+D  HLIKK V+IRKHL+RNRKD DSKFRLILVESRIHRLA YYKKTKKLPPVWK
Subjt:  IVVGYGYVIFALEKIWLAPEIPKDFCHLIKKVVSIRKHLQRNRKDNDSKFRLILVESRIHRLAWYYKKTKKLPPVWK

XP_011076311.1 40S ribosomal protein S13-like [Sesamum indicum]1.2e-2175.68Show/hide
Query:  GYGYVIFALEKIWLAPEIPKDFCHLIKKVVSIRKHLQRNRKDNDSKFRLILVESRIHRLAWYYKKTKKLPPVWK
        G G ++  L+   LAPEIP+D  HLIKK V+IRKHL+RNRKD DSKFRLILVESRIHRLA YYKKTKKLPPVWK
Subjt:  GYGYVIFALEKIWLAPEIPKDFCHLIKKVVSIRKHLQRNRKDNDSKFRLILVESRIHRLAWYYKKTKKLPPVWK

TrEMBL top hitse value%identityAlignment
A0A0D3DUP7 Ribosomal_S13_N domain-containing protein1.3e-2156.03Show/hide
Query:  WPKEKNREIDESKTKESSGLFEDNWMQGV--DKKGRPIV--VGYGYVIFALEKIWLAPEIPKDFCHLIKKVVSIRKHLQRNRKDNDSKFRLILVESRIHR
        W K  ++++DES  K +      + +  +  D  G P V  V    ++  L+   LAPEIP+D  HLIKK V+IRKHL+RNRKD DSKFRLILVESRIHR
Subjt:  WPKEKNREIDESKTKESSGLFEDNWMQGV--DKKGRPIV--VGYGYVIFALEKIWLAPEIPKDFCHLIKKVVSIRKHLQRNRKDNDSKFRLILVESRIHR

Query:  LAWYYKKTKKLPPVWK
        LA YYKKTKKLPPVWK
Subjt:  LAWYYKKTKKLPPVWK

A0A1J3J0L1 40S ribosomal protein S13-21.0e-2156.03Show/hide
Query:  WPKEKNREIDESKTKESSGLFEDNWMQGV--DKKGRPIV--VGYGYVIFALEKIWLAPEIPKDFCHLIKKVVSIRKHLQRNRKDNDSKFRLILVESRIHR
        W K  ++++DES  K +      + +  +  D  G P V  V    ++  L+   LAPEIP+D  HLIKK V+IRKHL+RNRKD DSKFRLILVESRIHR
Subjt:  WPKEKNREIDESKTKESSGLFEDNWMQGV--DKKGRPIV--VGYGYVIFALEKIWLAPEIPKDFCHLIKKVVSIRKHLQRNRKDNDSKFRLILVESRIHR

Query:  LAWYYKKTKKLPPVWK
        LA YYKKTKKLPPVWK
Subjt:  LAWYYKKTKKLPPVWK

A0A4D9B4Z4 Small subunit ribosomal protein S13e5.5e-2376.62Show/hide
Query:  IVVGYGYVIFALEKIWLAPEIPKDFCHLIKKVVSIRKHLQRNRKDNDSKFRLILVESRIHRLAWYYKKTKKLPPVWK
        I+ G+G V+  L  +WLAPEIP+D  HLIKK V+IRKHL+RNRKD DSKFRLILVESRIHRLA YYKKTKKLPPVWK
Subjt:  IVVGYGYVIFALEKIWLAPEIPKDFCHLIKKVVSIRKHLQRNRKDNDSKFRLILVESRIHRLAWYYKKTKKLPPVWK

A0A6I9T785 40S ribosomal protein S13-like6.0e-2275.68Show/hide
Query:  GYGYVIFALEKIWLAPEIPKDFCHLIKKVVSIRKHLQRNRKDNDSKFRLILVESRIHRLAWYYKKTKKLPPVWK
        G G ++  L+   LAPEIP+D  HLIKK V+IRKHL+RNRKD DSKFRLILVESRIHRLA YYKKTKKLPPVWK
Subjt:  GYGYVIFALEKIWLAPEIPKDFCHLIKKVVSIRKHLQRNRKDNDSKFRLILVESRIHRLAWYYKKTKKLPPVWK

W9RYU7 40S ribosomal protein S131.0e-2163.27Show/hide
Query:  KESSGLFEDNWMQGVDKKGRPIVVGYGYVIFALEKIWLAPEIPKDFCHLIKKVVSIRKHLQRNRKDNDSKFRLILVESRIHRLAWYYKKTKKLPPVWK
        K SS   E+N  +   K   P  +G    +   +   LAPEIP+D  HLIKK VSIRKHL+RNRKD DSKFRLILVESRIHRLA YYKKTKKLPPVWK
Subjt:  KESSGLFEDNWMQGVDKKGRPIVVGYGYVIFALEKIWLAPEIPKDFCHLIKKVVSIRKHLQRNRKDNDSKFRLILVESRIHRLAWYYKKTKKLPPVWK

SwissProt top hitse value%identityAlignment
P46298 40S ribosomal protein S139.0e-2386.89Show/hide
Query:  LAPEIPKDFCHLIKKVVSIRKHLQRNRKDNDSKFRLILVESRIHRLAWYYKKTKKLPPVWK
        LAPEIP+D  HLIKK VSIRKHL+R RKD DSKFRLILVESRIHRLA YYKKTKKLPPVWK
Subjt:  LAPEIPKDFCHLIKKVVSIRKHLQRNRKDNDSKFRLILVESRIHRLAWYYKKTKKLPPVWK

P59223 40S ribosomal protein S13-18.1e-2456.03Show/hide
Query:  WPKEKNREIDESKTKESSGLFEDNWMQGV--DKKGRPIV--VGYGYVIFALEKIWLAPEIPKDFCHLIKKVVSIRKHLQRNRKDNDSKFRLILVESRIHR
        W K   +++DES  K +      + +  +  D  G P V  V    ++  L+   LAPEIP+D  HLIKK V+IRKHL+RNRKD DSKFRLILVESRIHR
Subjt:  WPKEKNREIDESKTKESSGLFEDNWMQGV--DKKGRPIV--VGYGYVIFALEKIWLAPEIPKDFCHLIKKVVSIRKHLQRNRKDNDSKFRLILVESRIHR

Query:  LAWYYKKTKKLPPVWK
        LA YYKKTKKLPPVWK
Subjt:  LAWYYKKTKKLPPVWK

P59224 40S ribosomal protein S13-23.6e-2456.03Show/hide
Query:  WPKEKNREIDESKTKESSGLFEDNWMQGV--DKKGRPIV--VGYGYVIFALEKIWLAPEIPKDFCHLIKKVVSIRKHLQRNRKDNDSKFRLILVESRIHR
        W K  ++++DES  K +      + +  +  D  G P V  V    ++  L+   LAPEIP+D  HLIKK V+IRKHL+RNRKD DSKFRLILVESRIHR
Subjt:  WPKEKNREIDESKTKESSGLFEDNWMQGV--DKKGRPIV--VGYGYVIFALEKIWLAPEIPKDFCHLIKKVVSIRKHLQRNRKDNDSKFRLILVESRIHR

Query:  LAWYYKKTKKLPPVWK
        LA YYKKTKKLPPVWK
Subjt:  LAWYYKKTKKLPPVWK

P62302 40S ribosomal protein S138.1e-2488.52Show/hide
Query:  LAPEIPKDFCHLIKKVVSIRKHLQRNRKDNDSKFRLILVESRIHRLAWYYKKTKKLPPVWK
        LAPEIP+D  HLIKK VSIRKHL+RNRKD DSKFRLILVESRIHRLA YYKKTKKLPPVWK
Subjt:  LAPEIPKDFCHLIKKVVSIRKHLQRNRKDNDSKFRLILVESRIHRLAWYYKKTKKLPPVWK

Q69UI2 40S ribosomal protein S13-12.0e-2265.88Show/hide
Query:  DKKGRPIV--VGYGYVIFALEKIWLAPEIPKDFCHLIKKVVSIRKHLQRNRKDNDSKFRLILVESRIHRLAWYYKKTKKLPPVWK
        D+ G P+V  V    ++  L+   LAPEIP+D   LIKK V+IRKHL+RNRKD DSKFRLILVESRIHRLA YYK+TKKLPP WK
Subjt:  DKKGRPIV--VGYGYVIFALEKIWLAPEIPKDFCHLIKKVVSIRKHLQRNRKDNDSKFRLILVESRIHRLAWYYKKTKKLPPVWK

Arabidopsis top hitse value%identityAlignment
AT3G60770.1 Ribosomal protein S13/S155.8e-2556.03Show/hide
Query:  WPKEKNREIDESKTKESSGLFEDNWMQGV--DKKGRPIV--VGYGYVIFALEKIWLAPEIPKDFCHLIKKVVSIRKHLQRNRKDNDSKFRLILVESRIHR
        W K   +++DES  K +      + +  +  D  G P V  V    ++  L+   LAPEIP+D  HLIKK V+IRKHL+RNRKD DSKFRLILVESRIHR
Subjt:  WPKEKNREIDESKTKESSGLFEDNWMQGV--DKKGRPIV--VGYGYVIFALEKIWLAPEIPKDFCHLIKKVVSIRKHLQRNRKDNDSKFRLILVESRIHR

Query:  LAWYYKKTKKLPPVWK
        LA YYKKTKKLPPVWK
Subjt:  LAWYYKKTKKLPPVWK

AT4G00100.1 ribosomal protein S13A2.6e-2556.03Show/hide
Query:  WPKEKNREIDESKTKESSGLFEDNWMQGV--DKKGRPIV--VGYGYVIFALEKIWLAPEIPKDFCHLIKKVVSIRKHLQRNRKDNDSKFRLILVESRIHR
        W K  ++++DES  K +      + +  +  D  G P V  V    ++  L+   LAPEIP+D  HLIKK V+IRKHL+RNRKD DSKFRLILVESRIHR
Subjt:  WPKEKNREIDESKTKESSGLFEDNWMQGV--DKKGRPIV--VGYGYVIFALEKIWLAPEIPKDFCHLIKKVVSIRKHLQRNRKDNDSKFRLILVESRIHR

Query:  LAWYYKKTKKLPPVWK
        LA YYKKTKKLPPVWK
Subjt:  LAWYYKKTKKLPPVWK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTGTCCCCTCCCCTCCGGCGAACAGCTCCGACGACGGCACAGCAGTAGTGGCGGTTCATCGGCGATTTCTGCGTGGTTCCGTTCAGCAAGCATTCCCTTCAAATTT
CGGCGATTCAAGCAGTGGGTCTTCGACTTTCAACGTCTTTGAGCAATTTCGACATTGGCCAAAAGAGAAGAATAGAGAAATTGATGAGAGCAAGACCAAGGAATCCTCCG
GCCTTTTTGAAGATAATTGGATGCAAGGTGTTGATAAGAAGGGACGTCCAATTGTAGTCGGCTATGGTTATGTAATCTTTGCTCTAGAGAAAATATGGCTAGCTCCTGAA
ATCCCAAAGGATTTTTGCCATCTCATCAAGAAAGTTGTTTCAATCAGAAAGCATTTGCAGAGAAACAGGAAAGATAATGATTCCAAGTTCAGGTTGATTTTGGTGGAGAG
TAGGATCCATCGCCTAGCCTGGTATTACAAGAAGACAAAGAAACTTCCCCCTGTTTGGAAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGTGTCCCCTCCCCTCCGGCGAACAGCTCCGACGACGGCACAGCAGTAGTGGCGGTTCATCGGCGATTTCTGCGTGGTTCCGTTCAGCAAGCATTCCCTTCAAATTT
CGGCGATTCAAGCAGTGGGTCTTCGACTTTCAACGTCTTTGAGCAATTTCGACATTGGCCAAAAGAGAAGAATAGAGAAATTGATGAGAGCAAGACCAAGGAATCCTCCG
GCCTTTTTGAAGATAATTGGATGCAAGGTGTTGATAAGAAGGGACGTCCAATTGTAGTCGGCTATGGTTATGTAATCTTTGCTCTAGAGAAAATATGGCTAGCTCCTGAA
ATCCCAAAGGATTTTTGCCATCTCATCAAGAAAGTTGTTTCAATCAGAAAGCATTTGCAGAGAAACAGGAAAGATAATGATTCCAAGTTCAGGTTGATTTTGGTGGAGAG
TAGGATCCATCGCCTAGCCTGGTATTACAAGAAGACAAAGAAACTTCCCCCTGTTTGGAAGTAG
Protein sequenceShow/hide protein sequence
MCVPSPPANSSDDGTAVVAVHRRFLRGSVQQAFPSNFGDSSSGSSTFNVFEQFRHWPKEKNREIDESKTKESSGLFEDNWMQGVDKKGRPIVVGYGYVIFALEKIWLAPE
IPKDFCHLIKKVVSIRKHLQRNRKDNDSKFRLILVESRIHRLAWYYKKTKKLPPVWK