; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg005675 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg005675
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionLysM domain-containing protein
Genome locationscaffold8:21789217..21789489
RNA-Seq ExpressionSpg005675
SyntenySpg005675
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR018392 - LysM domain
IPR036779 - LysM domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8647420.1 hypothetical protein Csa_003059 [Cucumis sativus]7.7e-2678.05Show/hide
Query:  SSAKVKVLALV-LVLSWSLWCCKCQDLM--ACEEIYVVCEGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFHH
        S +K KV++LV LVLS  +WCCK  +L+   CEEIYVV EGETLQ+ISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFHH
Subjt:  SSAKVKVLALV-LVLSWSLWCCKCQDLM--ACEEIYVVCEGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFHH

KAG6595189.1 hypothetical protein SDJN03_11742, partial [Cucurbita argyrosperma subsp. sororia]1.3e-2572.22Show/hide
Query:  MAERSSAKVKVLALVLVLS-WSLWCCKCQD-LMACEEIYVVCEGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITPF-HHIVDG
        MA+RSS++ + L LVLVLS W +WCC  Q+ LM C+EIYVV EGETLQ+ISEKCGDPFI E NPHIND DDVFPGLVIKITPF H  +DG
Subjt:  MAERSSAKVKVLALVLVLS-WSLWCCKCQD-LMACEEIYVVCEGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITPF-HHIVDG

OMO68297.1 hypothetical protein COLO4_29778 [Corchorus olitorius]1.2e-1890.2Show/hide
Query:  CEEIYVVCEGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFHH
        C+EIYVV EGETLQTISEKCGDP+IVEENPHI+DPDDVFPGLVIKITPFH+
Subjt:  CEEIYVVCEGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFHH

XP_009621487.1 uncharacterized protein LOC104113099 [Nicotiana tomentosiformis]1.5e-1867.07Show/hide
Query:  LALVLVLSW------SLWCCKCQ------DLMACEEIYVVCEGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITPF
        LA++LVLSW      S +  + Q      + M C+EIYVV EGETLQTISEKCGDPFIVEENPHI+DPDDVFPGL+IKITPF
Subjt:  LALVLVLSW------SLWCCKCQ------DLMACEEIYVVCEGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITPF

XP_019179717.1 PREDICTED: uncharacterized protein LOC109174930 [Ipomoea nil]6.9e-1997.96Show/hide
Query:  CEEIYVVCEGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITPF
        CEEIYVV EGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITPF
Subjt:  CEEIYVVCEGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITPF

TrEMBL top hitse value%identityAlignment
A0A1J6IY47 LysM domain-containing protein1.3e-1867.07Show/hide
Query:  LALVLVLSW------SLWCCKCQ------DLMACEEIYVVCEGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITPF
        LA++LVLSW      S +  + Q      + M C+EIYVV EGETLQTISEKCGDPFIVEENPHI+DPDDV+PGLVIKITPF
Subjt:  LALVLVLSW------SLWCCKCQ------DLMACEEIYVVCEGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITPF

A0A1R3HD93 LysM domain-containing protein5.7e-1990.2Show/hide
Query:  CEEIYVVCEGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFHH
        C+EIYVV EGETLQTISEKCGDP+IVEENPHI+DPDDVFPGLVIKITPFH+
Subjt:  CEEIYVVCEGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFHH

A0A1R3IHT9 LysM domain-containing protein5.7e-1990.2Show/hide
Query:  CEEIYVVCEGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFHH
        C+EIYVV EGETLQTISEKCGDP+IVEENPHI+DPDDVFPGLVIKITPFH+
Subjt:  CEEIYVVCEGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFHH

A0A1S4DFP9 uncharacterized protein LOC1078293277.5e-1967.07Show/hide
Query:  LALVLVLSW------SLWCCKCQ------DLMACEEIYVVCEGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITPF
        LA++LVLSW      S +  + Q      + M C+EIYVV EGETLQTISEKCGDPFIVEENPHI+DPDDVFPGL+IKITPF
Subjt:  LALVLVLSW------SLWCCKCQ------DLMACEEIYVVCEGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITPF

A0A6A2ZEX3 Transcription initiation factor TFIID subunit 12-like1.3e-1857.29Show/hide
Query:  MAERSSAKVKVLALVLVLSWSLWCCK-------CQDLM-----ACEEIYVVCEGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFHHI
        M E+ S K  V+ + ++L+ S  CC+        ++L      AC+EIYVV EGETLQTISEKCGDPFIVE NPHI+DPDDVFPGL+IK+TPF++I
Subjt:  MAERSSAKVKVLALVLVLSWSLWCCK-------CQDLM-----ACEEIYVVCEGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFHHI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G52790.1 peptidoglycan-binding LysM domain-containing protein8.2e-1879.59Show/hide
Query:  ACEEIYVVCEGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITP
        AC+EIY V EGETLQTISEKCGDP+IVE NPHI+D DD+FPGL+I+ITP
Subjt:  ACEEIYVVCEGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITP

AT4G25433.1 peptidoglycan-binding LysM domain-containing protein1.8e-1780.43Show/hide
Query:  CEEIYVVCEGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKI
        CEE+YVV EG+TL +ISEKCGDPFIVE NPHI+DPDDVFPGL+IK+
Subjt:  CEEIYVVCEGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKI

AT5G62150.1 peptidoglycan-binding LysM domain-containing protein1.1e-1980Show/hide
Query:  CEEIYVVCEGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFH
        CEEIY+V EGETL TI +KCGDPFIVE NPHI+DPDDVFPGLV+KI PF+
Subjt:  CEEIYVVCEGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGAGAGATCATCAGCAAAAGTGAAGGTTTTGGCTCTGGTTTTGGTTTTGAGCTGGTCATTATGGTGTTGCAAGTGCCAAGATTTGATGGCTTGTGAAGAGATATA
CGTTGTTTGTGAAGGAGAAACTTTGCAGACAATTAGTGAAAAGTGTGGAGATCCTTTTATTGTTGAAGAGAATCCTCATATCAATGATCCAGATGATGTTTTTCCTGGTT
TGGTCATCAAGATCACTCCTTTTCACCATATTGTCGATGGATTTCTCAGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCGAGAGATCATCAGCAAAAGTGAAGGTTTTGGCTCTGGTTTTGGTTTTGAGCTGGTCATTATGGTGTTGCAAGTGCCAAGATTTGATGGCTTGTGAAGAGATATA
CGTTGTTTGTGAAGGAGAAACTTTGCAGACAATTAGTGAAAAGTGTGGAGATCCTTTTATTGTTGAAGAGAATCCTCATATCAATGATCCAGATGATGTTTTTCCTGGTT
TGGTCATCAAGATCACTCCTTTTCACCATATTGTCGATGGATTTCTCAGCTGA
Protein sequenceShow/hide protein sequence
MAERSSAKVKVLALVLVLSWSLWCCKCQDLMACEEIYVVCEGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFHHIVDGFLS