; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg005676 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg005676
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDNA-directed RNA polymerase V subunit 5C-like
Genome locationscaffold8:20833563..20835418
RNA-Seq ExpressionSpg005676
SyntenySpg005676
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8661093.1 hypothetical protein F3Y22_tig00116939pilonHSYRG00213 [Hibiscus syriacus]4.3e-1828.87Show/hide
Query:  REVCENPRNYAPALVHDFYRAQWQEEVNEVMVRGHTVAFSSACINNVYELRDI--------PNAEGNALLGCLDNDFLRVVLLAMARPGAKWDGHDTAR-
        ++   +P +   +LV +FY   ++     + VRG  + F+S  IN+ + L+D+          A+ N   G L++         +     +W+G  T+R 
Subjt:  REVCENPRNYAPALVHDFYRAQWQEEVNEVMVRGHTVAFSSACINNVYELRDI--------PNAEGNALLGCLDNDFLRVVLLAMARPGAKWDGHDTAR-

Query:  TLKSQLLDFEATCWMHWVKNRIMPTTHDATLSLQRVILVYCIMQGTPIDLGQILVETLRQTAAKPKGAMFCPGLVTHLCRTSGLVPAVDEEIRP
        ++  + L   A  W H++KN++MPT+H+ T+SL R++L++ IM   PID+G I+V+ +     K   A+  P L+T LCR   +     +EI P
Subjt:  TLKSQLLDFEATCWMHWVKNRIMPTTHDATLSLQRVILVYCIMQGTPIDLGQILVETLRQTAAKPKGAMFCPGLVTHLCRTSGLVPAVDEEIRP

KAE8718449.1 hypothetical protein F3Y22_tig00110013pilonHSYRG00240 [Hibiscus syriacus]3.6e-1729.12Show/hide
Query:  NPRNYAPALVHDFYRAQWQEEVNEVMVRGHTVAFSSACINNVYELRDIPNAEGNALL-GCLDNDFLRVVLLAMARPGAKWDGHDTAR-TLKSQLLDFEAT
        +P +   +LV +FY    +   + + VRG  + F+S  IN  + L+++   +G+A+     D++    VL  +     +W+G  T+R ++  + L   A 
Subjt:  NPRNYAPALVHDFYRAQWQEEVNEVMVRGHTVAFSSACINNVYELRDIPNAEGNALL-GCLDNDFLRVVLLAMARPGAKWDGHDTAR-TLKSQLLDFEAT

Query:  CWMHWVKNRIMPTTHDATLSLQRVILVYCIMQGTPIDLGQILVETLRQTAAKPKGAMFCPGLVTHLCRTSGLVPAVDEEIRP
         W H++K+++MPT+H+ T+SL R++L++ ++   PID+G+I+V+ +     K   A+  P L+T LCR   +     +EI P
Subjt:  CWMHWVKNRIMPTTHDATLSLQRVILVYCIMQGTPIDLGQILVETLRQTAAKPKGAMFCPGLVTHLCRTSGLVPAVDEEIRP

PON35554.1 hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii]1.5e-1830.8Show/hide
Query:  HRKREVCENPRNYAPALVHDFYRAQWQEEVNEVMVRGHTVAFSSACINNVYELRDIPNAEGNALLGCLDNDFLRVVLLAMARPGAKWD-GHDTARTLKSQ
        H  ++ C +P +    LV +FY        N V VRG  V++S   IN V+ L D  +     +    ++D +  VL  +A  GA+W+     A T    
Subjt:  HRKREVCENPRNYAPALVHDFYRAQWQEEVNEVMVRGHTVAFSSACINNVYELRDIPNAEGNALLGCLDNDFLRVVLLAMARPGAKWD-GHDTARTLKSQ

Query:  LLDFEATCWMHWVKNRIMPTTHDATLSLQRVILVYCIMQGTPIDLGQILVETLRQTAAKPKGAMFCPGLVTHLCRTSGLVPAVDEEIRPMRKDFDDQWWT
         L   A  W H++K+ ++PTTH  T+S  R++L++ ++ G  I++G+++   +R  AA+  GA+F P L+T LCR +     V+EE      + D     
Subjt:  LLDFEATCWMHWVKNRIMPTTHDATLSLQRVILVYCIMQGTPIDLGQILVETLRQTAAKPKGAMFCPGLVTHLCRTSGLVPAVDEEIRPMRKDFDDQWWT

Query:  RVTSTHDRRLQGSTQQPASASQPT
        R+T         STQQP+S+   T
Subjt:  RVTSTHDRRLQGSTQQPASASQPT

PON46472.1 hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii]1.3e-1932.14Show/hide
Query:  HRKREVCENPRNYAPALVHDFYRAQWQEEVNEVMVRGHTVAFSSACINNVYELRDIPNAEGNALLGCLDNDFLRVVLLAMARPGAKWD-GHDTARTLKSQ
        H  ++ C +P +    LV +FY      E N V VRG  V++S   IN V+ L D P  E +  +  +    L  VL  +A  GA+W+     A T    
Subjt:  HRKREVCENPRNYAPALVHDFYRAQWQEEVNEVMVRGHTVAFSSACINNVYELRDIPNAEGNALLGCLDNDFLRVVLLAMARPGAKWD-GHDTARTLKSQ

Query:  LLDFEATCWMHWVKNRIMPTTHDATLSLQRVILVYCIMQGTPIDLGQILVETLRQTAAKPKGAMFCPGLVTHLCRTSGLVPAVDEEIRPMRKDFDDQWWT
         L   A  W H++K+R++PTTH  T+S  R++L++ ++ G  I++G+++   +R  AA+  GA+F P L+T LCR +     V+EE      + D     
Subjt:  LLDFEATCWMHWVKNRIMPTTHDATLSLQRVILVYCIMQGTPIDLGQILVETLRQTAAKPKGAMFCPGLVTHLCRTSGLVPAVDEEIRPMRKDFDDQWWT

Query:  RVTSTHDRRLQGSTQQPASASQPT
        R+          STQQP+S+   T
Subjt:  RVTSTHDRRLQGSTQQPASASQPT

PON70375.1 hypothetical protein PanWU01x14_080440 [Parasponia andersonii]4.7e-1731.18Show/hide
Query:  HRKREVCENPRNYAPALVHDFYRAQWQEEVNEVMVRGHTVAFSSACINNVYELRDIPNAEGNALLGCLDNDFLRVVLLAMARPGAKWD-GHDTARTLKSQ
        H  +  C +P +    LV +FY      + + V +RG  V  S   IN ++ L D P  E +  +  +    L +VL  +A  GA+W+     A T    
Subjt:  HRKREVCENPRNYAPALVHDFYRAQWQEEVNEVMVRGHTVAFSSACINNVYELRDIPNAEGNALLGCLDNDFLRVVLLAMARPGAKWD-GHDTARTLKSQ

Query:  LLDFEATCWMHWVKNRIMPTTHDATLSLQRVILVYCIMQGTPIDLGQILVETLRQTAAKPKGAMFCPGLVTHLCRTSGLVPAVDEE
         L+  A  W H++K+R++PTTH  T+S + V L+Y ++ G  I++G+++   +   AA+  GA+F P L+T +CR +     V+EE
Subjt:  LLDFEATCWMHWVKNRIMPTTHDATLSLQRVILVYCIMQGTPIDLGQILVETLRQTAAKPKGAMFCPGLVTHLCRTSGLVPAVDEE

TrEMBL top hitse value%identityAlignment
A0A2P5AGA5 Uncharacterized protein (Fragment)7.1e-1930.8Show/hide
Query:  HRKREVCENPRNYAPALVHDFYRAQWQEEVNEVMVRGHTVAFSSACINNVYELRDIPNAEGNALLGCLDNDFLRVVLLAMARPGAKWD-GHDTARTLKSQ
        H  ++ C +P +    LV +FY        N V VRG  V++S   IN V+ L D  +     +    ++D +  VL  +A  GA+W+     A T    
Subjt:  HRKREVCENPRNYAPALVHDFYRAQWQEEVNEVMVRGHTVAFSSACINNVYELRDIPNAEGNALLGCLDNDFLRVVLLAMARPGAKWD-GHDTARTLKSQ

Query:  LLDFEATCWMHWVKNRIMPTTHDATLSLQRVILVYCIMQGTPIDLGQILVETLRQTAAKPKGAMFCPGLVTHLCRTSGLVPAVDEEIRPMRKDFDDQWWT
         L   A  W H++K+ ++PTTH  T+S  R++L++ ++ G  I++G+++   +R  AA+  GA+F P L+T LCR +     V+EE      + D     
Subjt:  LLDFEATCWMHWVKNRIMPTTHDATLSLQRVILVYCIMQGTPIDLGQILVETLRQTAAKPKGAMFCPGLVTHLCRTSGLVPAVDEEIRPMRKDFDDQWWT

Query:  RVTSTHDRRLQGSTQQPASASQPT
        R+T         STQQP+S+   T
Subjt:  RVTSTHDRRLQGSTQQPASASQPT

A0A2P5BCG4 Uncharacterized protein (Fragment)6.5e-2032.14Show/hide
Query:  HRKREVCENPRNYAPALVHDFYRAQWQEEVNEVMVRGHTVAFSSACINNVYELRDIPNAEGNALLGCLDNDFLRVVLLAMARPGAKWD-GHDTARTLKSQ
        H  ++ C +P +    LV +FY      E N V VRG  V++S   IN V+ L D P  E +  +  +    L  VL  +A  GA+W+     A T    
Subjt:  HRKREVCENPRNYAPALVHDFYRAQWQEEVNEVMVRGHTVAFSSACINNVYELRDIPNAEGNALLGCLDNDFLRVVLLAMARPGAKWD-GHDTARTLKSQ

Query:  LLDFEATCWMHWVKNRIMPTTHDATLSLQRVILVYCIMQGTPIDLGQILVETLRQTAAKPKGAMFCPGLVTHLCRTSGLVPAVDEEIRPMRKDFDDQWWT
         L   A  W H++K+R++PTTH  T+S  R++L++ ++ G  I++G+++   +R  AA+  GA+F P L+T LCR +     V+EE      + D     
Subjt:  LLDFEATCWMHWVKNRIMPTTHDATLSLQRVILVYCIMQGTPIDLGQILVETLRQTAAKPKGAMFCPGLVTHLCRTSGLVPAVDEEIRPMRKDFDDQWWT

Query:  RVTSTHDRRLQGSTQQPASASQPT
        R+          STQQP+S+   T
Subjt:  RVTSTHDRRLQGSTQQPASASQPT

A0A2P5DAQ2 Uncharacterized protein2.3e-1731.18Show/hide
Query:  HRKREVCENPRNYAPALVHDFYRAQWQEEVNEVMVRGHTVAFSSACINNVYELRDIPNAEGNALLGCLDNDFLRVVLLAMARPGAKWD-GHDTARTLKSQ
        H  +  C +P +    LV +FY      + + V +RG  V  S   IN ++ L D P  E +  +  +    L +VL  +A  GA+W+     A T    
Subjt:  HRKREVCENPRNYAPALVHDFYRAQWQEEVNEVMVRGHTVAFSSACINNVYELRDIPNAEGNALLGCLDNDFLRVVLLAMARPGAKWD-GHDTARTLKSQ

Query:  LLDFEATCWMHWVKNRIMPTTHDATLSLQRVILVYCIMQGTPIDLGQILVETLRQTAAKPKGAMFCPGLVTHLCRTSGLVPAVDEE
         L+  A  W H++K+R++PTTH  T+S + V L+Y ++ G  I++G+++   +   AA+  GA+F P L+T +CR +     V+EE
Subjt:  LLDFEATCWMHWVKNRIMPTTHDATLSLQRVILVYCIMQGTPIDLGQILVETLRQTAAKPKGAMFCPGLVTHLCRTSGLVPAVDEE

A0A6A2WM54 Uncharacterized protein2.1e-1828.87Show/hide
Query:  REVCENPRNYAPALVHDFYRAQWQEEVNEVMVRGHTVAFSSACINNVYELRDI--------PNAEGNALLGCLDNDFLRVVLLAMARPGAKWDGHDTAR-
        ++   +P +   +LV +FY   ++     + VRG  + F+S  IN+ + L+D+          A+ N   G L++         +     +W+G  T+R 
Subjt:  REVCENPRNYAPALVHDFYRAQWQEEVNEVMVRGHTVAFSSACINNVYELRDI--------PNAEGNALLGCLDNDFLRVVLLAMARPGAKWDGHDTAR-

Query:  TLKSQLLDFEATCWMHWVKNRIMPTTHDATLSLQRVILVYCIMQGTPIDLGQILVETLRQTAAKPKGAMFCPGLVTHLCRTSGLVPAVDEEIRP
        ++  + L   A  W H++KN++MPT+H+ T+SL R++L++ IM   PID+G I+V+ +     K   A+  P L+T LCR   +     +EI P
Subjt:  TLKSQLLDFEATCWMHWVKNRIMPTTHDATLSLQRVILVYCIMQGTPIDLGQILVETLRQTAAKPKGAMFCPGLVTHLCRTSGLVPAVDEEIRP

A0A6A3BU96 Uncharacterized protein1.8e-1729.12Show/hide
Query:  NPRNYAPALVHDFYRAQWQEEVNEVMVRGHTVAFSSACINNVYELRDIPNAEGNALL-GCLDNDFLRVVLLAMARPGAKWDGHDTAR-TLKSQLLDFEAT
        +P +   +LV +FY    +   + + VRG  + F+S  IN  + L+++   +G+A+     D++    VL  +     +W+G  T+R ++  + L   A 
Subjt:  NPRNYAPALVHDFYRAQWQEEVNEVMVRGHTVAFSSACINNVYELRDIPNAEGNALL-GCLDNDFLRVVLLAMARPGAKWDGHDTAR-TLKSQLLDFEAT

Query:  CWMHWVKNRIMPTTHDATLSLQRVILVYCIMQGTPIDLGQILVETLRQTAAKPKGAMFCPGLVTHLCRTSGLVPAVDEEIRP
         W H++K+++MPT+H+ T+SL R++L++ ++   PID+G+I+V+ +     K   A+  P L+T LCR   +     +EI P
Subjt:  CWMHWVKNRIMPTTHDATLSLQRVILVYCIMQGTPIDLGQILVETLRQTAAKPKGAMFCPGLVTHLCRTSGLVPAVDEEIRP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGAATTAGGCGAGGACGGCGACGCAAACCGTCTGCGAGAAGAGCAAGAAAAAGCTGCTGCAGAGGAAACTGGGCGCAAGGCCACCGCAGATGAAAACGCAGCCGA
AGAAGGAGAAAGCACCGGCAAGCAGGCGCAAGATCCAGTCGCCGCAGAAATTGCCGCAACCAACTTAGCTATCATCGCGGCTGCTCTGGAAGTAGAATCTTCTGATTCCG
AGGATGAGCTCCCCCTAACTCATCGCCGCAACATCCAGCCGACAGGGGTAGTCATCCAAAAACCCTCTGAAAGACCTGCGGCAGCCCCAAGCAATAAGAGGAAAGCGCCC
ACCGCATCTAAAAGCAAAGGAAAAGAAAAAAGTGGGCACAGGAAAAGGGAAGTTTGCGAGAACCCTCGCAACTACGCCCCTGCGCTAGTCCATGACTTCTACCGAGCACA
GTGGCAAGAAGAAGTCAACGAAGTAATGGTTCGAGGCCACACAGTCGCATTCTCCTCCGCATGCATCAACAATGTATACGAGCTGCGAGATATCCCAAACGCGGAAGGGA
ATGCGCTCCTCGGCTGCCTCGACAACGACTTCCTGAGAGTAGTACTCCTTGCGATGGCCCGACCTGGAGCCAAGTGGGACGGCCACGACACTGCGAGAACCCTGAAGTCG
CAGCTGCTTGACTTTGAAGCCACCTGCTGGATGCATTGGGTGAAGAACCGCATCATGCCCACAACGCATGATGCCACATTGAGCCTTCAACGGGTAATCCTTGTTTATTG
CATCATGCAGGGAACCCCAATCGACTTGGGCCAGATCCTCGTCGAAACATTGCGCCAGACCGCCGCAAAACCTAAAGGCGCAATGTTTTGCCCAGGCCTTGTCACCCATT
TATGCCGCACATCCGGCCTTGTGCCCGCAGTAGATGAAGAAATCCGACCCATGCGGAAGGACTTCGACGACCAATGGTGGACACGCGTGACCAGCACCCACGACAGGCGT
TTGCAAGGAAGCACACAGCAACCAGCCTCCGCATCCCAACCCACCGAGCCTACGCCTGCGCCTGAAATACAAAAGAGAAAAAGGAGCAAGCAAACCGCAGGCCGAAACCC
ACCACCAGCCGCAAGGACCCCTCAATCTACTCCACCAGCGCAGAAAGCTTACCACCGCCACCACCAATTGTCTAGAACACACCTCCTCCGCAGCACGACGAAGACTTGCG
ATCAGAGGAGATTTTCGAAAGCCTCTTTCCCTAGTCCCCATCACAATGACGAAGTTCCTGTGCCGAGCCCGACACCGCAAGCCACAGCTTCTGCAAGCGCAAGACAGGCT
GCGGCTAATCTATTGATTGATGTAGATTTAGCCCTTATCTTTTCGGAGTTGCGGCAGATAATACAAGAAGGTGTAGAGCCCCTTCGCCGGCAGCAAGAAAGGATGTGCCA
GCAACAGGAATTGCTGCGAAAGCAACAAGATGAGCTGTCGCAGCGAGTAAATGCCTTAGTCCTTTTTCTGATGCGATGGACTAAAGGTTTTGGCAGCTTGCCAGCCACGC
CCAACTTATTCGTACAGACAGTTTCGCCACAAAGACCCTCTAGCACTGGCCCATCCCAGGTGCACGGTTCCATGCCTCCGCCTGCGCCGAGGGATCCAAGAGCTCCACCA
CCACCGCCACCGCAGGGATAG
mRNA sequenceShow/hide mRNA sequence
ATGGGAGAATTAGGCGAGGACGGCGACGCAAACCGTCTGCGAGAAGAGCAAGAAAAAGCTGCTGCAGAGGAAACTGGGCGCAAGGCCACCGCAGATGAAAACGCAGCCGA
AGAAGGAGAAAGCACCGGCAAGCAGGCGCAAGATCCAGTCGCCGCAGAAATTGCCGCAACCAACTTAGCTATCATCGCGGCTGCTCTGGAAGTAGAATCTTCTGATTCCG
AGGATGAGCTCCCCCTAACTCATCGCCGCAACATCCAGCCGACAGGGGTAGTCATCCAAAAACCCTCTGAAAGACCTGCGGCAGCCCCAAGCAATAAGAGGAAAGCGCCC
ACCGCATCTAAAAGCAAAGGAAAAGAAAAAAGTGGGCACAGGAAAAGGGAAGTTTGCGAGAACCCTCGCAACTACGCCCCTGCGCTAGTCCATGACTTCTACCGAGCACA
GTGGCAAGAAGAAGTCAACGAAGTAATGGTTCGAGGCCACACAGTCGCATTCTCCTCCGCATGCATCAACAATGTATACGAGCTGCGAGATATCCCAAACGCGGAAGGGA
ATGCGCTCCTCGGCTGCCTCGACAACGACTTCCTGAGAGTAGTACTCCTTGCGATGGCCCGACCTGGAGCCAAGTGGGACGGCCACGACACTGCGAGAACCCTGAAGTCG
CAGCTGCTTGACTTTGAAGCCACCTGCTGGATGCATTGGGTGAAGAACCGCATCATGCCCACAACGCATGATGCCACATTGAGCCTTCAACGGGTAATCCTTGTTTATTG
CATCATGCAGGGAACCCCAATCGACTTGGGCCAGATCCTCGTCGAAACATTGCGCCAGACCGCCGCAAAACCTAAAGGCGCAATGTTTTGCCCAGGCCTTGTCACCCATT
TATGCCGCACATCCGGCCTTGTGCCCGCAGTAGATGAAGAAATCCGACCCATGCGGAAGGACTTCGACGACCAATGGTGGACACGCGTGACCAGCACCCACGACAGGCGT
TTGCAAGGAAGCACACAGCAACCAGCCTCCGCATCCCAACCCACCGAGCCTACGCCTGCGCCTGAAATACAAAAGAGAAAAAGGAGCAAGCAAACCGCAGGCCGAAACCC
ACCACCAGCCGCAAGGACCCCTCAATCTACTCCACCAGCGCAGAAAGCTTACCACCGCCACCACCAATTGTCTAGAACACACCTCCTCCGCAGCACGACGAAGACTTGCG
ATCAGAGGAGATTTTCGAAAGCCTCTTTCCCTAGTCCCCATCACAATGACGAAGTTCCTGTGCCGAGCCCGACACCGCAAGCCACAGCTTCTGCAAGCGCAAGACAGGCT
GCGGCTAATCTATTGATTGATGTAGATTTAGCCCTTATCTTTTCGGAGTTGCGGCAGATAATACAAGAAGGTGTAGAGCCCCTTCGCCGGCAGCAAGAAAGGATGTGCCA
GCAACAGGAATTGCTGCGAAAGCAACAAGATGAGCTGTCGCAGCGAGTAAATGCCTTAGTCCTTTTTCTGATGCGATGGACTAAAGGTTTTGGCAGCTTGCCAGCCACGC
CCAACTTATTCGTACAGACAGTTTCGCCACAAAGACCCTCTAGCACTGGCCCATCCCAGGTGCACGGTTCCATGCCTCCGCCTGCGCCGAGGGATCCAAGAGCTCCACCA
CCACCGCCACCGCAGGGATAG
Protein sequenceShow/hide protein sequence
MGELGEDGDANRLREEQEKAAAEETGRKATADENAAEEGESTGKQAQDPVAAEIAATNLAIIAAALEVESSDSEDELPLTHRRNIQPTGVVIQKPSERPAAAPSNKRKAP
TASKSKGKEKSGHRKREVCENPRNYAPALVHDFYRAQWQEEVNEVMVRGHTVAFSSACINNVYELRDIPNAEGNALLGCLDNDFLRVVLLAMARPGAKWDGHDTARTLKS
QLLDFEATCWMHWVKNRIMPTTHDATLSLQRVILVYCIMQGTPIDLGQILVETLRQTAAKPKGAMFCPGLVTHLCRTSGLVPAVDEEIRPMRKDFDDQWWTRVTSTHDRR
LQGSTQQPASASQPTEPTPAPEIQKRKRSKQTAGRNPPPAARTPQSTPPAQKAYHRHHQLSRTHLLRSTTKTCDQRRFSKASFPSPHHNDEVPVPSPTPQATASASARQA
AANLLIDVDLALIFSELRQIIQEGVEPLRRQQERMCQQQELLRKQQDELSQRVNALVLFLMRWTKGFGSLPATPNLFVQTVSPQRPSSTGPSQVHGSMPPPAPRDPRAPP
PPPPQG