; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg005682 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg005682
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold8:21569600..21572370
RNA-Seq ExpressionSpg005682
SyntenySpg005682
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032941.1 hypothetical protein E6C27_scaffold269G00150 [Cucumis melo var. makuwa]7.6e-1858.95Show/hide
Query:  MVATKEENQCLASTFTRPSTFQRLSVSTSKKSRSSTSVFDHLKVTDDQPQRKMDNLEVKLFDEVSSDKKLQSIVPSRMARKFSILINTEGSLKFE
        M   KEENQCL ST+TR S F+RLS+STSKK R STS FD LK+T+DQ QR+M  L+ K F E + D K+ S V SRM RK S+ INTEGS   +
Subjt:  MVATKEENQCLASTFTRPSTFQRLSVSTSKKSRSSTSVFDHLKVTDDQPQRKMDNLEVKLFDEVSSDKKLQSIVPSRMARKFSILINTEGSLKFE

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.4e-1859.57Show/hide
Query:  MSMVATKEENQCLASTFTRPSTFQRLSVSTSKKSRSSTSVFDHLKVTDDQPQRKMDNLEVKLFDEVSSDKKLQSIVPSRMARKFSILINTEGSL
        +SM   +EENQC  ST+ R S F+RLS+STSKK R STS FD LK+T+DQ QR+M +L+ K F E + D K+ S VPSRM RK S+ INTEGSL
Subjt:  MSMVATKEENQCLASTFTRPSTFQRLSVSTSKKSRSSTSVFDHLKVTDDQPQRKMDNLEVKLFDEVSSDKKLQSIVPSRMARKFSILINTEGSL

KAA0050734.1 gag protease polyprotein [Cucumis melo var. makuwa]3.4e-1859.57Show/hide
Query:  MSMVATKEENQCLASTFTRPSTFQRLSVSTSKKSRSSTSVFDHLKVTDDQPQRKMDNLEVKLFDEVSSDKKLQSIVPSRMARKFSILINTEGSL
        +SM   +EENQC  ST+ R S F+RLS+STSKK R STS FD LK+T+DQ QR+M +L+ K F E + D K+ S VPSRM RK S+ INTEGSL
Subjt:  MSMVATKEENQCLASTFTRPSTFQRLSVSTSKKSRSSTSVFDHLKVTDDQPQRKMDNLEVKLFDEVSSDKKLQSIVPSRMARKFSILINTEGSL

KAA0063719.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.6e-1860.64Show/hide
Query:  MSMVATKEENQCLASTFTRPSTFQRLSVSTSKKSRSSTSVFDHLKVTDDQPQRKMDNLEVKLFDEVSSDKKLQSIVPSRMARKFSILINTEGSL
        +SM   +EENQC  ST+ R STF+RLS+STSKK R STS FD LK+T+DQ QR+M  L+ K F E + D K+ S VPSRM RK S+ INTEGSL
Subjt:  MSMVATKEENQCLASTFTRPSTFQRLSVSTSKKSRSSTSVFDHLKVTDDQPQRKMDNLEVKLFDEVSSDKKLQSIVPSRMARKFSILINTEGSL

TYK18884.1 gag protease polyprotein [Cucumis melo var. makuwa]7.6e-1859.57Show/hide
Query:  MSMVATKEENQCLASTFTRPSTFQRLSVSTSKKSRSSTSVFDHLKVTDDQPQRKMDNLEVKLFDEVSSDKKLQSIVPSRMARKFSILINTEGSL
        +SM   +EENQC  ST+ R S F+RLS+STSKK R STS FD LK+T+DQ QR+M +L+ K F E + D K+ S VPSRM RK SI INT+GSL
Subjt:  MSMVATKEENQCLASTFTRPSTFQRLSVSTSKKSRSSTSVFDHLKVTDDQPQRKMDNLEVKLFDEVSSDKKLQSIVPSRMARKFSILINTEGSL

TrEMBL top hitse value%identityAlignment
A0A5A7STU1 Uncharacterized protein3.7e-1858.95Show/hide
Query:  MVATKEENQCLASTFTRPSTFQRLSVSTSKKSRSSTSVFDHLKVTDDQPQRKMDNLEVKLFDEVSSDKKLQSIVPSRMARKFSILINTEGSLKFE
        M   KEENQCL ST+TR S F+RLS+STSKK R STS FD LK+T+DQ QR+M  L+ K F E + D K+ S V SRM RK S+ INTEGS   +
Subjt:  MVATKEENQCLASTFTRPSTFQRLSVSTSKKSRSSTSVFDHLKVTDDQPQRKMDNLEVKLFDEVSSDKKLQSIVPSRMARKFSILINTEGSLKFE

A0A5A7TQ06 Retrotransposon gag protein1.7e-1859.57Show/hide
Query:  MSMVATKEENQCLASTFTRPSTFQRLSVSTSKKSRSSTSVFDHLKVTDDQPQRKMDNLEVKLFDEVSSDKKLQSIVPSRMARKFSILINTEGSL
        +SM   +EENQC  ST+ R S F+RLS+STSKK R STS FD LK+T+DQ QR+M +L+ K F E + D K+ S VPSRM RK S+ INTEGSL
Subjt:  MSMVATKEENQCLASTFTRPSTFQRLSVSTSKKSRSSTSVFDHLKVTDDQPQRKMDNLEVKLFDEVSSDKKLQSIVPSRMARKFSILINTEGSL

A0A5A7VDY3 Ty3-gypsy retrotransposon protein1.3e-1860.64Show/hide
Query:  MSMVATKEENQCLASTFTRPSTFQRLSVSTSKKSRSSTSVFDHLKVTDDQPQRKMDNLEVKLFDEVSSDKKLQSIVPSRMARKFSILINTEGSL
        +SM   +EENQC  ST+ R STF+RLS+STSKK R STS FD LK+T+DQ QR+M  L+ K F E + D K+ S VPSRM RK S+ INTEGSL
Subjt:  MSMVATKEENQCLASTFTRPSTFQRLSVSTSKKSRSSTSVFDHLKVTDDQPQRKMDNLEVKLFDEVSSDKKLQSIVPSRMARKFSILINTEGSL

A0A5D3BBF9 Gag protease polyprotein1.7e-1859.57Show/hide
Query:  MSMVATKEENQCLASTFTRPSTFQRLSVSTSKKSRSSTSVFDHLKVTDDQPQRKMDNLEVKLFDEVSSDKKLQSIVPSRMARKFSILINTEGSL
        +SM   +EENQC  ST+ R S F+RLS+STSKK R STS FD LK+T+DQ QR+M +L+ K F E + D K+ S VPSRM RK S+ INTEGSL
Subjt:  MSMVATKEENQCLASTFTRPSTFQRLSVSTSKKSRSSTSVFDHLKVTDDQPQRKMDNLEVKLFDEVSSDKKLQSIVPSRMARKFSILINTEGSL

A0A5D3D5Q0 Gag protease polyprotein3.7e-1859.57Show/hide
Query:  MSMVATKEENQCLASTFTRPSTFQRLSVSTSKKSRSSTSVFDHLKVTDDQPQRKMDNLEVKLFDEVSSDKKLQSIVPSRMARKFSILINTEGSL
        +SM   +EENQC  ST+ R S F+RLS+STSKK R STS FD LK+T+DQ QR+M +L+ K F E + D K+ S VPSRM RK SI INT+GSL
Subjt:  MSMVATKEENQCLASTFTRPSTFQRLSVSTSKKSRSSTSVFDHLKVTDDQPQRKMDNLEVKLFDEVSSDKKLQSIVPSRMARKFSILINTEGSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTATGGTCGCGACAAAAGAAGAAAATCAATGTTTGGCGTCCACCTTCACTCGACCTTCAACTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTC
AACATCTGTCTTTGATCACCTCAAAGTAACAGACGATCAACCTCAAAGAAAAATGGATAACTTAGAGGTCAAACTGTTCGATGAAGTAAGCAGTGACAAGAAGCTTCAAA
GTATTGTCCCGTCACGTATGGCAAGGAAATTCTCTATTCTCATAAATACAGAAGGTTCCTTGAAGTTTGAAGGTTCTCCGATGCATGCTCCTGCGTTGCTTCTTCTCCAA
GTTCGAAGGTTCTCGGCTTGCGTTGCTGCGCTACTTCCTTCTTCAAGTTCGAAGGTTCTCACATTGAGCTATTGTGCTCCTTCCTTCTCCAAGTTCAAATGTTCTGACGT
TGCGCTGCTTCCTTCACCAAGTTCGAAGGTTCTGACGTTGCGCTGCTTACTTCTCCAAGTTCGAAGGTTCTCATGCCACGCTGCTTCGCTGCTCCTTCTCCAAGTCCGAA
GTTCGAAGGTTCTCACGCTGCTTCGCTGCAATTCCTTCCTCCAAGTTCGAAGGGCCTCTCATGCTGCTTCGCTGCAGTTCCTTCCTCCTGCAACAGTTCCTTCCTCCAAG
TTCGAAGGTTCTCATGTTGTCCTCCTGCAACAGTTCCTTCTTCCAAGTTCGAAGGTTCTCACGCTGCGTCGCTGCAGTTCCTTCCTCCAAGTTAGAAGGGGTTCTCATGT
AGCGCCTACCTCCAATTCTTTCCCCCTGCAACTTCTTGTTCCTTCTCTCCAAGTTCGAAGGTTTTCTCGCTGCGCTGCTGTTCCTTCCTCCAAGTTCGAAGGTTCTCACG
TTGTCCTCCTGCAACAGTTCTTTCTTCGAAGTTCGAAAGTTCTCACGCTGCGTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGGGTTCTTATGCAGTGCCTTCCTCGAAG
TTCGAAGGTTCTCACGCTGCTTCTTCCTCACGTTGCTTCGCTACAGTTCCTTCCTCCGAAGGTTCTAACGCTGTTTCTGCTCCTCCGAAGGTTCTAACGCTGCCTCTGCT
TCGTCACGTTGCTTCGCTGCAGTTCCTTCCTCCTGTAGTTCCTTGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGTTGCTTCGTTGTTGTTCCTTCTCTAAATTCGAAG
GTTATCACGCTACGTTGTTCAAAGGTCCTTCCTCTTACACTGCATTGCATCGCCGTTCCTTCAACAAGTTCGAAGGTTCTAACGTTGAACAGGAAAGGAGCCTAAGTGGG
AATGACATCATAAGTGGGAATGACATCATGTGTCCTTGGGCCGAGGGACGTCGTAACAACAGAAGTCCAAAAGACGTCAATTGTCCTTGTACATATGCTGAAAGATGTTG
CAGCAATAAAGGAGCCCAAGTGGGAGGGACATCATGTGTCCTTGGGTCGGGGAACGTCATAGCAACAAAAGTCCAAAGACGTCAATTGTCCTTCAGTAAAGGAGCCCAAG
TGGGAGTGACATCATGTGTCCTTGGGCCGGGAAACGTCGTAGCAACAAAAGTCCAAAGACGTCAATTGTCCTTTTACTCTTATGCTGGAAGACGTTGCAGCAGAAAAGGA
GCCCAAGTGGGAGTGACATCATGTGTCCTTGTGCCGGAGAGCGTCGTAGCAACAAAATTCCAAAGACGTCATATGTCCTTGGATTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGTATGGTCGCGACAAAAGAAGAAAATCAATGTTTGGCGTCCACCTTCACTCGACCTTCAACTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTC
AACATCTGTCTTTGATCACCTCAAAGTAACAGACGATCAACCTCAAAGAAAAATGGATAACTTAGAGGTCAAACTGTTCGATGAAGTAAGCAGTGACAAGAAGCTTCAAA
GTATTGTCCCGTCACGTATGGCAAGGAAATTCTCTATTCTCATAAATACAGAAGGTTCCTTGAAGTTTGAAGGTTCTCCGATGCATGCTCCTGCGTTGCTTCTTCTCCAA
GTTCGAAGGTTCTCGGCTTGCGTTGCTGCGCTACTTCCTTCTTCAAGTTCGAAGGTTCTCACATTGAGCTATTGTGCTCCTTCCTTCTCCAAGTTCAAATGTTCTGACGT
TGCGCTGCTTCCTTCACCAAGTTCGAAGGTTCTGACGTTGCGCTGCTTACTTCTCCAAGTTCGAAGGTTCTCATGCCACGCTGCTTCGCTGCTCCTTCTCCAAGTCCGAA
GTTCGAAGGTTCTCACGCTGCTTCGCTGCAATTCCTTCCTCCAAGTTCGAAGGGCCTCTCATGCTGCTTCGCTGCAGTTCCTTCCTCCTGCAACAGTTCCTTCCTCCAAG
TTCGAAGGTTCTCATGTTGTCCTCCTGCAACAGTTCCTTCTTCCAAGTTCGAAGGTTCTCACGCTGCGTCGCTGCAGTTCCTTCCTCCAAGTTAGAAGGGGTTCTCATGT
AGCGCCTACCTCCAATTCTTTCCCCCTGCAACTTCTTGTTCCTTCTCTCCAAGTTCGAAGGTTTTCTCGCTGCGCTGCTGTTCCTTCCTCCAAGTTCGAAGGTTCTCACG
TTGTCCTCCTGCAACAGTTCTTTCTTCGAAGTTCGAAAGTTCTCACGCTGCGTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGGGTTCTTATGCAGTGCCTTCCTCGAAG
TTCGAAGGTTCTCACGCTGCTTCTTCCTCACGTTGCTTCGCTACAGTTCCTTCCTCCGAAGGTTCTAACGCTGTTTCTGCTCCTCCGAAGGTTCTAACGCTGCCTCTGCT
TCGTCACGTTGCTTCGCTGCAGTTCCTTCCTCCTGTAGTTCCTTGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGTTGCTTCGTTGTTGTTCCTTCTCTAAATTCGAAG
GTTATCACGCTACGTTGTTCAAAGGTCCTTCCTCTTACACTGCATTGCATCGCCGTTCCTTCAACAAGTTCGAAGGTTCTAACGTTGAACAGGAAAGGAGCCTAAGTGGG
AATGACATCATAAGTGGGAATGACATCATGTGTCCTTGGGCCGAGGGACGTCGTAACAACAGAAGTCCAAAAGACGTCAATTGTCCTTGTACATATGCTGAAAGATGTTG
CAGCAATAAAGGAGCCCAAGTGGGAGGGACATCATGTGTCCTTGGGTCGGGGAACGTCATAGCAACAAAAGTCCAAAGACGTCAATTGTCCTTCAGTAAAGGAGCCCAAG
TGGGAGTGACATCATGTGTCCTTGGGCCGGGAAACGTCGTAGCAACAAAAGTCCAAAGACGTCAATTGTCCTTTTACTCTTATGCTGGAAGACGTTGCAGCAGAAAAGGA
GCCCAAGTGGGAGTGACATCATGTGTCCTTGTGCCGGAGAGCGTCGTAGCAACAAAATTCCAAAGACGTCATATGTCCTTGGATTAA
Protein sequenceShow/hide protein sequence
MSMVATKEENQCLASTFTRPSTFQRLSVSTSKKSRSSTSVFDHLKVTDDQPQRKMDNLEVKLFDEVSSDKKLQSIVPSRMARKFSILINTEGSLKFEGSPMHAPALLLLQ
VRRFSACVAALLPSSSSKVLTLSYCAPSFSKFKCSDVALLPSPSSKVLTLRCLLLQVRRFSCHAASLLLLQVRSSKVLTLLRCNSFLQVRRASHAASLQFLPPATVPSSK
FEGSHVVLLQQFLLPSSKVLTLRRCSSFLQVRRGSHVAPTSNSFPLQLLVPSLQVRRFSRCAAVPSSKFEGSHVVLLQQFFLRSSKVLTLRRCSSFLQVRRGSYAVPSSK
FEGSHAASSSRCFATVPSSEGSNAVSAPPKVLTLPLLRHVASLQFLPPVVPCSFSPSSKVLTLLRCCSFSKFEGYHATLFKGPSSYTALHRRSFNKFEGSNVEQERSLSG
NDIISGNDIMCPWAEGRRNNRSPKDVNCPCTYAERCCSNKGAQVGGTSCVLGSGNVIATKVQRRQLSFSKGAQVGVTSCVLGPGNVVATKVQRRQLSFYSYAGRRCSRKG
AQVGVTSCVLVPESVVATKFQRRHMSLD