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Spg005689 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg005689
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionGag/pol protein
Genome locationscaffold8:20073577..20083732
RNA-Seq ExpressionSpg005689
SyntenySpg005689
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025994.1 retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa]5.0e-0666.67Show/hide
Query:  ETTWVRVANTPTQYAFLFGDKTEWEAGDMTTREGIHSFPLLG
        E + VRVA  PTQYA+ FGDKTEW AG+  T++GIHSFP LG
Subjt:  ETTWVRVANTPTQYAFLFGDKTEWEAGDMTTREGIHSFPLLG
KAA0042877.1 gag-pol polyprotein [Cucumis melo var. makuwa]1.2e-0460.47Show/hide
Query:  EETTWVRVANTPTQYAFLFGDKTEWEAGDMTTREGIHSFPLLG
        ++T  VRVA   TQYA+ FGDKTEW A ++ T++GIHSFP LG
Subjt:  EETTWVRVANTPTQYAFLFGDKTEWEAGDMTTREGIHSFPLLG
KAA0043328.1 gag/pol protein [Cucumis melo var. makuwa]1.9e-0560.98Show/hide
Query:  WVRVANTPTQYAFLFGDKTEWEAGDMTTREGIHSFPLLGEV
        ++RVA  PTQYA+ F DKTEW AG++ T++GIHSFP LG +
Subjt:  WVRVANTPTQYAFLFGDKTEWEAGDMTTREGIHSFPLLGEV
KAA0065950.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]7.8e-0773.68Show/hide
Query:  VRVANTPTQYAFLFGDKTEWEAGDMTTREGIHSFPLLG
        VRVA  PTQYA+ FGDKTEW AG++ T++GIHSFPLLG
Subjt:  VRVANTPTQYAFLFGDKTEWEAGDMTTREGIHSFPLLG
TYK27885.1 retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa]2.5e-0560.47Show/hide
Query:  WVRVANTPTQYAFLFGDKTEWEAGDMTTREGIHSFPLLGEVDE
        ++RVA  PTQYA+ F DKTEW AG++ T++GIH FP LG VD+
Subjt:  WVRVANTPTQYAFLFGDKTEWEAGDMTTREGIHSFPLLGEVDE
TrEMBL top hitse value%identityAlignment
A0A5A7SJY0 Retrotransposon protein putative ty3-gypsy sub-class2.4e-0666.67Show/hide
Query:  ETTWVRVANTPTQYAFLFGDKTEWEAGDMTTREGIHSFPLLG
        E + VRVA  PTQYA+ FGDKTEW AG+  T++GIHSFP LG
Subjt:  ETTWVRVANTPTQYAFLFGDKTEWEAGDMTTREGIHSFPLLG
A0A5A7TKJ4 Gag/pol protein9.3e-0660.98Show/hide
Query:  WVRVANTPTQYAFLFGDKTEWEAGDMTTREGIHSFPLLGEV
        ++RVA  PTQYA+ F DKTEW AG++ T++GIHSFP LG +
Subjt:  WVRVANTPTQYAFLFGDKTEWEAGDMTTREGIHSFPLLGEV
A0A5A7VFG5 Ty1-copia retrotransposon protein3.8e-0773.68Show/hide
Query:  VRVANTPTQYAFLFGDKTEWEAGDMTTREGIHSFPLLG
        VRVA  PTQYA+ FGDKTEW AG++ T++GIHSFPLLG
Subjt:  VRVANTPTQYAFLFGDKTEWEAGDMTTREGIHSFPLLG
A0A5D3C1P5 Gag-pol polyprotein6.0e-0560.47Show/hide
Query:  EETTWVRVANTPTQYAFLFGDKTEWEAGDMTTREGIHSFPLLG
        ++T  VRVA   TQYA+ FGDKTEW A ++ T++GIHSFP LG
Subjt:  EETTWVRVANTPTQYAFLFGDKTEWEAGDMTTREGIHSFPLLG
A0A5D3DX33 Retrovirus-related pol polyprotein from transposon tnt 1-941.2e-0560.47Show/hide
Query:  WVRVANTPTQYAFLFGDKTEWEAGDMTTREGIHSFPLLGEVDE
        ++RVA  PTQYA+ F DKTEW AG++ T++GIH FP LG VD+
Subjt:  WVRVANTPTQYAFLFGDKTEWEAGDMTTREGIHSFPLLGEVDE
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTAGGAGTGAATTCCGTCTTGCGAAACTATGTCCCCAGCTATCTATTCGATCTTATCCCCAAAATGGTAGGCTTGTCGAGTCGGCGATGCTGGCCACTCTCACCCA
TGCAGATCAAAGGATAATCTCTCATAAACTGGAGTTCATAGATAGCTCAGGATTAAGAACGAGTTACCTAGTGGATGAAGATTCAATATGTGAAGCGGAGGTTGTTTATG
ATGTTTACAAGGAGGATGAATGGCCAATAATGTCGACATTATTGGAATTCTTCGACGGGTCAAAATCAGAATATATGTTTAAGAAAGATGATTATAGTGATGTTAGCCTA
AGAAGCCATGGCGTGTATGTTGTGGATGAGTATCACCTTCATCCAATACAAACTCTCACTTATGATGAAACCGAGGAGGAAACAGATGATGACACAGAGGAGGAAAGGGA
CAGTCGGGTTCAGAAATTCTACACTCTGACAAAGACAAGAGTTCAGAATTTTAAAGCTCTCAAGCAGAACCAGAGAATTCAGAGAGACTCCACCAAGTCTAAAGACCGAA
ACTCTCTTAAATCCATAAGGCTGGGAGACCGACCCAGAGGAAAAGCCGACCAAAGGGCCGGGCCAACTTGGCCCGACCCATATGGTCGGCCGAGGCCCAAGGCCGAGGCC
GAGCTCGGTCACCTCCTCTCGGTCCCTGATGCCTCTAGTTGCCCCGGTTTCGCCTGGTTTGTCCCGAAACACCTCCGAATTCCTAAAAACCCTAGGAGCACGAGCAGCAT
CGGAGGCGGTGTGGCTAGCACCACACCGGTGTGCAGGTTTTCTCTTTTGCAGGCCACGTCTTCCCCCTCATGTACAAATTTACCGTTGGTGGCACGTGAAGGTCAGGGGG
TTCGAGCCCCCATTGTCCAACGTAAATCCGTCGTTGATACTCATGTTGTCTACAATATAAGGTTGAACTATGCTCTTGTTGGCGCTTCTTTACTATTAATGTCATTGGTT
GCAAGCAGGCTACAACGATCGTCTCAGCAGGATACAACAACTAATTTCGGTAGAACAGCAACCTCGAACTATTCGAATCTGGCTGAACTCTTGGATACTTGCTCTCAACT
TGACTCAAGATCAAAAGAAATAAGGAAAGAAGGAAGAATGCTCCAAATGGAATGGGATGATTCAAATGAAGAAACAACATGGGTGAGAGTGGCCAATACGCCGACTCAAT
ATGCCTTCCTTTTTGGGGACAAGACCGAGTGGGAGGCTGGGGACATGACAACACGAGAAGGAATTCACTCCTTCCCACTTCTAGGAGAAGTAGATGAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTAGGAGTGAATTCCGTCTTGCGAAACTATGTCCCCAGCTATCTATTCGATCTTATCCCCAAAATGGTAGGCTTGTCGAGTCGGCGATGCTGGCCACTCTCACCCA
TGCAGATCAAAGGATAATCTCTCATAAACTGGAGTTCATAGATAGCTCAGGATTAAGAACGAGTTACCTAGTGGATGAAGATTCAATATGTGAAGCGGAGGTTGTTTATG
ATGTTTACAAGGAGGATGAATGGCCAATAATGTCGACATTATTGGAATTCTTCGACGGGTCAAAATCAGAATATATGTTTAAGAAAGATGATTATAGTGATGTTAGCCTA
AGAAGCCATGGCGTGTATGTTGTGGATGAGTATCACCTTCATCCAATACAAACTCTCACTTATGATGAAACCGAGGAGGAAACAGATGATGACACAGAGGAGGAAAGGGA
CAGTCGGGTTCAGAAATTCTACACTCTGACAAAGACAAGAGTTCAGAATTTTAAAGCTCTCAAGCAGAACCAGAGAATTCAGAGAGACTCCACCAAGTCTAAAGACCGAA
ACTCTCTTAAATCCATAAGGCTGGGAGACCGACCCAGAGGAAAAGCCGACCAAAGGGCCGGGCCAACTTGGCCCGACCCATATGGTCGGCCGAGGCCCAAGGCCGAGGCC
GAGCTCGGTCACCTCCTCTCGGTCCCTGATGCCTCTAGTTGCCCCGGTTTCGCCTGGTTTGTCCCGAAACACCTCCGAATTCCTAAAAACCCTAGGAGCACGAGCAGCAT
CGGAGGCGGTGTGGCTAGCACCACACCGGTGTGCAGGTTTTCTCTTTTGCAGGCCACGTCTTCCCCCTCATGTACAAATTTACCGTTGGTGGCACGTGAAGGTCAGGGGG
TTCGAGCCCCCATTGTCCAACGTAAATCCGTCGTTGATACTCATGTTGTCTACAATATAAGGTTGAACTATGCTCTTGTTGGCGCTTCTTTACTATTAATGTCATTGGTT
GCAAGCAGGCTACAACGATCGTCTCAGCAGGATACAACAACTAATTTCGGTAGAACAGCAACCTCGAACTATTCGAATCTGGCTGAACTCTTGGATACTTGCTCTCAACT
TGACTCAAGATCAAAAGAAATAAGGAAAGAAGGAAGAATGCTCCAAATGGAATGGGATGATTCAAATGAAGAAACAACATGGGTGAGAGTGGCCAATACGCCGACTCAAT
ATGCCTTCCTTTTTGGGGACAAGACCGAGTGGGAGGCTGGGGACATGACAACACGAGAAGGAATTCACTCCTTCCCACTTCTAGGAGAAGTAGATGAGTGA
Protein sequenceShow/hide protein sequence
MGRSEFRLAKLCPQLSIRSYPQNGRLVESAMLATLTHADQRIISHKLEFIDSSGLRTSYLVDEDSICEAEVVYDVYKEDEWPIMSTLLEFFDGSKSEYMFKKDDYSDVSL
RSHGVYVVDEYHLHPIQTLTYDETEEETDDDTEEERDSRVQKFYTLTKTRVQNFKALKQNQRIQRDSTKSKDRNSLKSIRLGDRPRGKADQRAGPTWPDPYGRPRPKAEA
ELGHLLSVPDASSCPGFAWFVPKHLRIPKNPRSTSSIGGGVASTTPVCRFSLLQATSSPSCTNLPLVAREGQGVRAPIVQRKSVVDTHVVYNIRLNYALVGASLLLMSLV
ASRLQRSSQQDTTTNFGRTATSNYSNLAELLDTCSQLDSRSKEIRKEGRMLQMEWDDSNEETTWVRVANTPTQYAFLFGDKTEWEAGDMTTREGIHSFPLLGEVDE