; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg005782 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg005782
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionU2 small nuclear ribonucleoprotein B
Genome locationscaffold11:409806..414122
RNA-Seq ExpressionSpg005782
SyntenySpg005782
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005686 - U2 snRNP (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004137370.1 U2 small nuclear ribonucleoprotein B'' 2 [Cucumis sativus]2.2e-10495.65Show/hide
Query:  ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRAEEAH
        ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFY+KPMRIQYAKTKSDC+AKADGSFVPREKKKKQEEKAE+KRRAEE H
Subjt:  ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRAEEAH

Query:  QSVMPNGTTAENGGANPTFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPM
        QS MPNGTT ENGG+N TFRHANPSA EATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPM
Subjt:  QSVMPNGTTAENGGANPTFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPM

Query:  AISFAKK
        AISFAKK
Subjt:  AISFAKK

XP_008457301.1 PREDICTED: U2 small nuclear ribonucleoprotein B'' 2-like [Cucumis melo]1.3e-10496.14Show/hide
Query:  ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRAEEAH
        ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFY+KPMRIQYAKTKSDCVAKADG+FVPREKKKKQEEKAE+KRRAEEAH
Subjt:  ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRAEEAH

Query:  QSVMPNGTTAENGGANPTFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPM
        QS MPNGTT ENGG+N TFRHANPSA EATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPM
Subjt:  QSVMPNGTTAENGGANPTFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPM

Query:  AISFAKK
        AISFAKK
Subjt:  AISFAKK

XP_022154903.1 U2 small nuclear ribonucleoprotein B'' 2-like [Momordica charantia]2.9e-10495.65Show/hide
Query:  ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRAEEAH
        ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAK+KSDCVAKADGSFVPREKKKKQEEKAERKRRAE++H
Subjt:  ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRAEEAH

Query:  QSVMPNGTTAENGGANPTFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPM
        QS MPNGTT ENG +N TFRHANPSAPEA PNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPM
Subjt:  QSVMPNGTTAENGGANPTFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPM

Query:  AISFAKK
        AISFAKK
Subjt:  AISFAKK

XP_022949507.1 U2 small nuclear ribonucleoprotein B'' 2-like [Cucurbita moschata]1.2e-10597.1Show/hide
Query:  ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRAEEAH
        ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRR EE H
Subjt:  ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRAEEAH

Query:  QSVMPNGTTAENGGANPTFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPM
        QS MPNG TAENGG+N TFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPM
Subjt:  QSVMPNGTTAENGGANPTFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPM

Query:  AISFAKK
        AISFAKK
Subjt:  AISFAKK

XP_023525708.1 U2 small nuclear ribonucleoprotein B'' 2-like isoform X1 [Cucurbita pepo subsp. pepo]2.6e-10596.62Show/hide
Query:  ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRAEEAH
        ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRR +E H
Subjt:  ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRAEEAH

Query:  QSVMPNGTTAENGGANPTFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPM
        QS MPNG TAENGG+N TFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPM
Subjt:  QSVMPNGTTAENGGANPTFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPM

Query:  AISFAKK
        AISFAKK
Subjt:  AISFAKK

TrEMBL top hitse value%identityAlignment
A0A0A0LPT7 Uncharacterized protein1.1e-10495.65Show/hide
Query:  ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRAEEAH
        ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFY+KPMRIQYAKTKSDC+AKADGSFVPREKKKKQEEKAE+KRRAEE H
Subjt:  ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRAEEAH

Query:  QSVMPNGTTAENGGANPTFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPM
        QS MPNGTT ENGG+N TFRHANPSA EATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPM
Subjt:  QSVMPNGTTAENGGANPTFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPM

Query:  AISFAKK
        AISFAKK
Subjt:  AISFAKK

A0A1S3C564 U2 small nuclear ribonucleoprotein B'' 2-like6.3e-10596.14Show/hide
Query:  ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRAEEAH
        ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFY+KPMRIQYAKTKSDCVAKADG+FVPREKKKKQEEKAE+KRRAEEAH
Subjt:  ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRAEEAH

Query:  QSVMPNGTTAENGGANPTFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPM
        QS MPNGTT ENGG+N TFRHANPSA EATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPM
Subjt:  QSVMPNGTTAENGGANPTFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPM

Query:  AISFAKK
        AISFAKK
Subjt:  AISFAKK

A0A5D3BF51 U2 small nuclear ribonucleoprotein B'' 2-like6.3e-10596.14Show/hide
Query:  ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRAEEAH
        ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFY+KPMRIQYAKTKSDCVAKADG+FVPREKKKKQEEKAE+KRRAEEAH
Subjt:  ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRAEEAH

Query:  QSVMPNGTTAENGGANPTFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPM
        QS MPNGTT ENGG+N TFRHANPSA EATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPM
Subjt:  QSVMPNGTTAENGGANPTFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPM

Query:  AISFAKK
        AISFAKK
Subjt:  AISFAKK

A0A6J1GC84 U2 small nuclear ribonucleoprotein B'' 2-like5.7e-10697.1Show/hide
Query:  ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRAEEAH
        ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRR EE H
Subjt:  ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRAEEAH

Query:  QSVMPNGTTAENGGANPTFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPM
        QS MPNG TAENGG+N TFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPM
Subjt:  QSVMPNGTTAENGGANPTFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPM

Query:  AISFAKK
        AISFAKK
Subjt:  AISFAKK

A0A6J1KA04 U2 small nuclear ribonucleoprotein B'' 2-like5.7e-10697.1Show/hide
Query:  ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRAEEAH
        ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRR EE H
Subjt:  ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRAEEAH

Query:  QSVMPNGTTAENGGANPTFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPM
        QS MPNG TAENGG+N TFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPM
Subjt:  QSVMPNGTTAENGGANPTFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPM

Query:  AISFAKK
        AISFAKK
Subjt:  AISFAKK

SwissProt top hitse value%identityAlignment
B8AM21 U2 small nuclear ribonucleoprotein B''9.4e-7473.21Show/hide
Query:  ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEK-AERKRRAEEA
        ELKRSLYAL SQYGRILDVVALKTP+LRGQAWV FSE+TAA+NA R +Q F FY K MR+QYAKTKSDC+A  DGS  P+EK+KKQEEK AE+KRRAEEA
Subjt:  ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEK-AERKRRAEEA

Query:  HQSVMPNGTTAENGGANPTFRHANPS-APEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQH
         QS  PN     NG      R    S  P A PNNILFI+NLP ET+SMMLQ+LFQQYPGFREVRMIEAKPGIAFVE+EDD QS +AMQALQGFKI P +
Subjt:  HQSVMPNGTTAENGGANPTFRHANPS-APEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQH

Query:  PMAISFAKK
        PMAIS+AKK
Subjt:  PMAISFAKK

O22922 U2 small nuclear ribonucleoprotein B''3.7e-7872.04Show/hide
Query:  ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRAEEAH
        ELKRSLY LFSQ+GRILDVVALKTP+LRGQAWV FSEVTAA +AVRQMQNFPFYDKPMR+QYAK KSDC+AKA+G+FVP++KK+KQEEK ERKR   +  
Subjt:  ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRAEEAH

Query:  QSV---MPNGTTAENGGANPTFRHANPSAPEA-TPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDP
         +      NG +A NG   P+F+   PS  E   PNNILFI+NLPHET+SMMLQ+LF+QYPGF+E+RMI+AKPGIAFVE+EDDVQ+S+AMQ LQGFKI P
Subjt:  QSV---MPNGTTAENGGANPTFRHANPSAPEA-TPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDP

Query:  QHPMAISFAKK
        Q+PM ISFAKK
Subjt:  QHPMAISFAKK

Q10MR0 U2 small nuclear ribonucleoprotein B''2.1e-7372.73Show/hide
Query:  ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEK-AERKRRAEEA
        ELKRSLYAL SQYGRILDVVALKTP+LRGQAWV FSE+TAA+NA R +Q F FY K MR+QYAKT+SDC+A  DGS  P+EK+KKQEEK AE+KRRAEEA
Subjt:  ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEK-AERKRRAEEA

Query:  HQSVMPNGTTAENGGANPTFRHANPS-APEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQH
         QS  PN     NG      R    S  P A PNNILFI+NLP ET+SMMLQ+LFQQYPGFREVRMIEAKPGIAFVE+EDD QS +AMQALQGFKI P +
Subjt:  HQSVMPNGTTAENGGANPTFRHANPS-APEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQH

Query:  PMAISFAKK
        PMAIS+AKK
Subjt:  PMAISFAKK

Q39244 U1 small nuclear ribonucleoprotein A4.2e-5857.99Show/hide
Query:  ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRAEEAH
        ELK+SL A+FSQ+G+IL+++A KT + +GQAWV F    +AS A+ +M NFPFYDK MRIQYAKTKSD VAKADG+FVPREK+K+ EEK   K++ ++ H
Subjt:  ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRAEEAH

Query:  QSV---MP-NGTTAENGGANPTFRHA------NPSAPE--ATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQA
         S    MP N       GA P            P+ PE  A PNNILF++NLPHET+ M+LQ+LF QY GF+EVRMIEAKPGIAFVEF D++QS++AMQ 
Subjt:  QSV---MP-NGTTAENGGANPTFRHA------NPSAPE--ATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQA

Query:  LQGFKIDPQHPMAISFAKK
        LQGFKI  Q+ M I++AKK
Subjt:  LQGFKIDPQHPMAISFAKK

Q8H1S6 U2 small nuclear ribonucleoprotein B'' 25.0e-8377.4Show/hide
Query:  ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRAEEAH
        ELKRSLY LFSQ+GR+LDVVALKTP+LRGQAWV F+EVTAASNAVRQMQNFPFYDKPMRIQYAK+KSD V KA+GSFVP+EKK KQEEK ERKR AEE  
Subjt:  ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRAEEAH

Query:  QSVMPNGTTAENGGANPTFRHANPSAPEA-TPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHP
        Q  MPNG T +NG   P F+   PS  +   PNNILFI NLP ET+SMMLQ+LF+QYPGF+E+RMIEAKPGIAFVE+EDDVQSSMAMQALQGFKI PQ+P
Subjt:  QSVMPNGTTAENGGANPTFRHANPSAPEA-TPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHP

Query:  MAISFAKK
        M +SFAKK
Subjt:  MAISFAKK

Arabidopsis top hitse value%identityAlignment
AT1G06960.1 RNA-binding (RRM/RBD/RNP motifs) family protein3.5e-8477.4Show/hide
Query:  ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRAEEAH
        ELKRSLY LFSQ+GR+LDVVALKTP+LRGQAWV F+EVTAASNAVRQMQNFPFYDKPMRIQYAK+KSD V KA+GSFVP+EKK KQEEK ERKR AEE  
Subjt:  ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRAEEAH

Query:  QSVMPNGTTAENGGANPTFRHANPSAPEA-TPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHP
        Q  MPNG T +NG   P F+   PS  +   PNNILFI NLP ET+SMMLQ+LF+QYPGF+E+RMIEAKPGIAFVE+EDDVQSSMAMQALQGFKI PQ+P
Subjt:  QSVMPNGTTAENGGANPTFRHANPSAPEA-TPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHP

Query:  MAISFAKK
        M +SFAKK
Subjt:  MAISFAKK

AT1G06960.2 RNA-binding (RRM/RBD/RNP motifs) family protein2.3e-8376.81Show/hide
Query:  ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRAEEAH
        ELKRSLY LFSQ+GR+LDVVALKTP+LRGQAWV F+EVTAASNAVRQMQNFPFYDKPMRIQYAK+KSD V KA+GSFVP+EKK KQEEK ERKR AEE  
Subjt:  ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRAEEAH

Query:  QSVMPNGTTAENGGANPTFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPM
        Q  MPNG T +NG   P       + P   PNNILFI NLP ET+SMMLQ+LF+QYPGF+E+RMIEAKPGIAFVE+EDDVQSSMAMQALQGFKI PQ+PM
Subjt:  QSVMPNGTTAENGGANPTFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPM

Query:  AISFAKK
         +SFAKK
Subjt:  AISFAKK

AT1G06960.3 RNA-binding (RRM/RBD/RNP motifs) family protein4.9e-7876.14Show/hide
Query:  QYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRAEEAHQSVMPNGTTAE
        ++GR+LDVVALKTP+LRGQAWV F+EVTAASNAVRQMQNFPFYDKPMRIQYAK+KSD V KA+GSFVP+EKK KQEEK ERKR AEE  Q  MPNG T +
Subjt:  QYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRAEEAHQSVMPNGTTAE

Query:  NGGANPTFRHANPSAPEA-TPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
        NG   P F+   PS  +   PNNILFI NLP ET+SMMLQ+LF+QYPGF+E+RMIEAKPGIAFVE+EDDVQSSMAMQALQGFKI PQ+PM +SFAKK
Subjt:  NGGANPTFRHANPSAPEA-TPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK

AT2G30260.1 U2 small nuclear ribonucleoprotein B2.6e-7972.04Show/hide
Query:  ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRAEEAH
        ELKRSLY LFSQ+GRILDVVALKTP+LRGQAWV FSEVTAA +AVRQMQNFPFYDKPMR+QYAK KSDC+AKA+G+FVP++KK+KQEEK ERKR   +  
Subjt:  ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRAEEAH

Query:  QSV---MPNGTTAENGGANPTFRHANPSAPEA-TPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDP
         +      NG +A NG   P+F+   PS  E   PNNILFI+NLPHET+SMMLQ+LF+QYPGF+E+RMI+AKPGIAFVE+EDDVQ+S+AMQ LQGFKI P
Subjt:  QSV---MPNGTTAENGGANPTFRHANPSAPEA-TPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDP

Query:  QHPMAISFAKK
        Q+PM ISFAKK
Subjt:  QHPMAISFAKK

AT2G47580.1 spliceosomal protein U1A3.0e-5957.99Show/hide
Query:  ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRAEEAH
        ELK+SL A+FSQ+G+IL+++A KT + +GQAWV F    +AS A+ +M NFPFYDK MRIQYAKTKSD VAKADG+FVPREK+K+ EEK   K++ ++ H
Subjt:  ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRAEEAH

Query:  QSV---MP-NGTTAENGGANPTFRHA------NPSAPE--ATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQA
         S    MP N       GA P            P+ PE  A PNNILF++NLPHET+ M+LQ+LF QY GF+EVRMIEAKPGIAFVEF D++QS++AMQ 
Subjt:  QSV---MP-NGTTAENGGANPTFRHA------NPSAPE--ATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQA

Query:  LQGFKIDPQHPMAISFAKK
        LQGFKI  Q+ M I++AKK
Subjt:  LQGFKIDPQHPMAISFAKK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTTTGGAGGGAAGCTTCTTTCCCCGAATGGTTTGGGTTTGTTATTAATGCTCTGTTCTTTTGGGCTTGGGTTGAATATTGGAGGCCCATTAGCAAGGCGTTGGAT
ACCGAAACTTGGAGTGGCTAGGGCTCCATCCTGCTTCCGCCGAGCCGAAGGCGCTGAACGTGAACCACCATGTTATCGGGGGATATACCGCCGAATCAGACCATATACAT
TAAGAATCTCAATGAGAAGGTCAAGAAAGAAGGTTGCGGAGGTTGAGGCAATGAACGGAGCTGAGACTGAAGTTGCTGGGGCGGTGGGCGGGGCTGATTTTGAATTGAAG
AGGTCCCTTTATGCTTTGTTTTCTCAATATGGAAGGATCCTTGATGTTGTTGCCTTGAAGACACCAAGGCTTCGAGGGCAAGCATGGGTTGCATTCAGTGAAGTGACCGC
AGCTAGCAATGCTGTGCGGCAGATGCAAAATTTCCCATTCTATGATAAACCTATGCGAATTCAATATGCCAAAACCAAATCAGATTGTGTTGCTAAAGCTGATGGAAGCT
TTGTGCCAAGGGAGAAGAAAAAGAAGCAAGAGGAAAAAGCTGAAAGAAAGCGACGTGCTGAAGAAGCGCACCAATCTGTAATGCCCAATGGAACAACTGCTGAGAATGGA
GGTGCAAATCCCACATTCCGTCATGCAAATCCAAGTGCTCCAGAAGCTACTCCAAACAATATACTATTTATTGAGAATTTGCCACATGAAACGTCTAGTATGATGTTGCA
AGTACTCTTCCAACAATATCCTGGATTCAGGGAAGTCCGGATGATTGAAGCGAAGCCGGGTATTGCTTTTGTTGAGTTTGAAGATGATGTTCAATCCTCTATGGCGATGC
AGGCTCTTCAAGGCTTTAAAATTGACCCCCAACATCCCATGGCTATCTCTTTTGCAAAGAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGTTTTGGAGGGAAGCTTCTTTCCCCGAATGGTTTGGGTTTGTTATTAATGCTCTGTTCTTTTGGGCTTGGGTTGAATATTGGAGGCCCATTAGCAAGGCGTTGGAT
ACCGAAACTTGGAGTGGCTAGGGCTCCATCCTGCTTCCGCCGAGCCGAAGGCGCTGAACGTGAACCACCATGTTATCGGGGGATATACCGCCGAATCAGACCATATACAT
TAAGAATCTCAATGAGAAGGTCAAGAAAGAAGGTTGCGGAGGTTGAGGCAATGAACGGAGCTGAGACTGAAGTTGCTGGGGCGGTGGGCGGGGCTGATTTTGAATTGAAG
AGGTCCCTTTATGCTTTGTTTTCTCAATATGGAAGGATCCTTGATGTTGTTGCCTTGAAGACACCAAGGCTTCGAGGGCAAGCATGGGTTGCATTCAGTGAAGTGACCGC
AGCTAGCAATGCTGTGCGGCAGATGCAAAATTTCCCATTCTATGATAAACCTATGCGAATTCAATATGCCAAAACCAAATCAGATTGTGTTGCTAAAGCTGATGGAAGCT
TTGTGCCAAGGGAGAAGAAAAAGAAGCAAGAGGAAAAAGCTGAAAGAAAGCGACGTGCTGAAGAAGCGCACCAATCTGTAATGCCCAATGGAACAACTGCTGAGAATGGA
GGTGCAAATCCCACATTCCGTCATGCAAATCCAAGTGCTCCAGAAGCTACTCCAAACAATATACTATTTATTGAGAATTTGCCACATGAAACGTCTAGTATGATGTTGCA
AGTACTCTTCCAACAATATCCTGGATTCAGGGAAGTCCGGATGATTGAAGCGAAGCCGGGTATTGCTTTTGTTGAGTTTGAAGATGATGTTCAATCCTCTATGGCGATGC
AGGCTCTTCAAGGCTTTAAAATTGACCCCCAACATCCCATGGCTATCTCTTTTGCAAAGAAGTAA
Protein sequenceShow/hide protein sequence
MGFGGKLLSPNGLGLLLMLCSFGLGLNIGGPLARRWIPKLGVARAPSCFRRAEGAEREPPCYRGIYRRIRPYTLRISMRRSRKKVAEVEAMNGAETEVAGAVGGADFELK
RSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRAEEAHQSVMPNGTTAENG
GANPTFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK