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Spg005784 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg005784
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionGRF-type domain-containing protein
Genome locationscaffold11:2727697..2728660
RNA-Seq ExpressionSpg005784
SyntenySpg005784
Gene Ontology termsGO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR010666 - Zinc finger, GRF-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAD1823597.1 unnamed protein product [Ananas comosus var. bracteatus]1.8e-1260Show/hide
Query:  CHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFDWCDPEVSEHSKEVIIKLRDEVGQLKK
        C CGL+A   TS T  NPGRRFYGC  YK N  GCGFF W DPE+ E  KE II+L +++G+LKK
Subjt:  CHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFDWCDPEVSEHSKEVIIKLRDEVGQLKK
KAG6471955.1 hypothetical protein ZIOFF_069408 [Zingiber officinale]6.8e-1250Show/hide
Query:  DNSETKNPSYCHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFDWCDPEVSEHSKEVI-------IKLRDEVGQLKK
        +  ET N S C+CGLRA L TSW + NPGRRF+ CP ++    GCGFF W DPE+SE +K +I        KL+ E+ +LKK
Subjt:  DNSETKNPSYCHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFDWCDPEVSEHSKEVI-------IKLRDEVGQLKK
KAG6514370.1 hypothetical protein ZIOFF_024723 [Zingiber officinale]3.1e-1252.63Show/hide
Query:  CHCGLRARLITSWTKRNPGRRFYGCPGYKGN----GSGCGFFDWCDPEVSEHSKEVI-------IKLRDEVGQLKK
        CHCGLRA L TSWT+ NPGR F+ CP Y+ +     +GCGFF W DPE+SE SK +I        KL+ E+ +LKK
Subjt:  CHCGLRARLITSWTKRNPGRRFYGCPGYKGN----GSGCGFFDWCDPEVSEHSKEVI-------IKLRDEVGQLKK
RZB70552.1 hypothetical protein D0Y65_035499 [Glycine soja]5.2e-1242.22Show/hide
Query:  EESIRGDNSETKNPSYCHCGLRARLITSWTKRNPGRRFYGCPGYKGNGS-GCGFFDWCDPEVSEHSKEVIIKLRDEVGQLKKIAQNLRRL
        E S     S+ ++  +C C + A L+TSWT+ NPGRRFYGC  YK  G+ GC FF W DP  +   K++I+ L  EV +LK   ++L+ +
Subjt:  EESIRGDNSETKNPSYCHCGLRARLITSWTKRNPGRRFYGCPGYKGNGS-GCGFFDWCDPEVSEHSKEVIIKLRDEVGQLKKIAQNLRRL
XP_042445187.1 uncharacterized protein LOC122030096 [Zingiber officinale]6.8e-1250Show/hide
Query:  DNSETKNPSYCHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFDWCDPEVSEHSKEVI-------IKLRDEVGQLKK
        +  ET N S C+CGLRA L TSW + NPGRRF+ CP ++    GCGFF W DPE+SE +K +I        KL+ E+ +LKK
Subjt:  DNSETKNPSYCHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFDWCDPEVSEHSKEVI-------IKLRDEVGQLKK
TrEMBL top hitse value%identityAlignment
A0A0B2QQH9 GRF-type domain-containing protein (Fragment)1.6e-1147.95Show/hide
Query:  SETKNPSYCHCGLRARLITSWTKRNPGRRFYGCPGYKGNG-SGCGFFDWCDPEVSEHSKEVIIKLRDEVGQLK
        SE ++  +C C + A L+TSWT+ NPGRRFYGC  YK  G   C FF W DP  +   K++I+ L  EV +LK
Subjt:  SETKNPSYCHCGLRARLITSWTKRNPGRRFYGCPGYKGNG-SGCGFFDWCDPEVSEHSKEVIIKLRDEVGQLK
A0A445HAE1 GRF-type domain-containing protein2.5e-1242.22Show/hide
Query:  EESIRGDNSETKNPSYCHCGLRARLITSWTKRNPGRRFYGCPGYKGNGS-GCGFFDWCDPEVSEHSKEVIIKLRDEVGQLKKIAQNLRRL
        E S     S+ ++  +C C + A L+TSWT+ NPGRRFYGC  YK  G+ GC FF W DP  +   K++I+ L  EV +LK   ++L+ +
Subjt:  EESIRGDNSETKNPSYCHCGLRARLITSWTKRNPGRRFYGCPGYKGNGS-GCGFFDWCDPEVSEHSKEVIIKLRDEVGQLKKIAQNLRRL
A0A445ILI1 GRF-type domain-containing protein9.6e-1242.22Show/hide
Query:  EESIRGDNSETKNPSYCHCGLRARLITSWTKRNPGRRFYGCPGYKGNGS-GCGFFDWCDPEVSEHSKEVIIKLRDEVGQLKKIAQNLRRL
        E S      E ++  +C C + A L+TSWT+ NPGRRFYGC  YK  G+ GC FF W DP  +   K++I+ L  EV +LK   ++L+ +
Subjt:  EESIRGDNSETKNPSYCHCGLRARLITSWTKRNPGRRFYGCPGYKGNGS-GCGFFDWCDPEVSEHSKEVIIKLRDEVGQLKKIAQNLRRL
A0A6V7NYI1 GRF-type domain-containing protein8.7e-1360Show/hide
Query:  CHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFDWCDPEVSEHSKEVIIKLRDEVGQLKK
        C CGL+A   TS T  NPGRRFYGC  YK N  GCGFF W DPE+ E  KE II+L +++G+LKK
Subjt:  CHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFDWCDPEVSEHSKEVIIKLRDEVGQLKK
A0A6V7P503 GRF-type domain-containing protein1.3e-1158.46Show/hide
Query:  CHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFDWCDPEVSEHSKEVIIKLRDEVGQLKK
        C CGL+A   TS T  N GRRFYGC  YK N  GCGFF W DPE+ E  KE II+L +++G+LKK
Subjt:  CHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFDWCDPEVSEHSKEVIIKLRDEVGQLKK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G54930.1 GRF zinc finger / Zinc knuckle protein5.0e-0542.86Show/hide
Query:  NPSYCHCGLRA---RLITSWTKRNPGRRFYGCPGYKGNGSGCGFFDWCD
        +P   HC   A     +TS T++NP RRFY CP        CG+F WCD
Subjt:  NPSYCHCGLRA---RLITSWTKRNPGRRFYGCPGYKGNGSGCGFFDWCD
AT3G42860.1 zinc knuckle (CCHC-type) family protein2.9e-0860.47Show/hide
Query:  CHCGLRARLI-TSWTKRNPGRRFYGCPGYKGNGSGCGFFDWCD
        C CG+   LI TS T +NPGR+FY CP  + NG GCGFF WCD
Subjt:  CHCGLRARLI-TSWTKRNPGRRFYGCPGYKGNGSGCGFFDWCD
AT5G33393.1 unknown protein1.9e-0436.36Show/hide
Query:  CHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFDWCDPEVS-EHSKEVIIKLRDEVGQLKK
        C+CG     I SWT  N GRRF+ C  +       GF  W D E      K  +++ RDE+  LK+
Subjt:  CHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFDWCDPEVS-EHSKEVIIKLRDEVGQLKK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCACGAGAAATGCCACAGAAACTTTCGAAAATTGCAATGGATAACTTTGAAGAGTCCATAAGAGGCGATAATAGTGAAACTAAGAACCCTAGCTACTGTCACTGTGG
GTTACGAGCTCGATTAATCACTTCATGGACAAAGAGGAACCCTGGAAGAAGATTCTATGGATGTCCTGGTTACAAGGGGAATGGTTCGGGATGTGGGTTTTTTGATTGGT
GTGATCCAGAAGTATCAGAACACAGCAAAGAAGTGATTATCAAACTAAGAGATGAAGTTGGTCAGTTGAAGAAGATTGCACAAAACTTGCGCCGTTTGGAGTGGTTGTAT
CGTGTAATAATTATAGTATTGGTGGGCATTTTAGTGATTGTATTTGGGTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCACGAGAAATGCCACAGAAACTTTCGAAAATTGCAATGGATAACTTTGAAGAGTCCATAAGAGGCGATAATAGTGAAACTAAGAACCCTAGCTACTGTCACTGTGG
GTTACGAGCTCGATTAATCACTTCATGGACAAAGAGGAACCCTGGAAGAAGATTCTATGGATGTCCTGGTTACAAGGGGAATGGTTCGGGATGTGGGTTTTTTGATTGGT
GTGATCCAGAAGTATCAGAACACAGCAAAGAAGTGATTATCAAACTAAGAGATGAAGTTGGTCAGTTGAAGAAGATTGCACAAAACTTGCGCCGTTTGGAGTGGTTGTAT
CGTGTAATAATTATAGTATTGGTGGGCATTTTAGTGATTGTATTTGGGTTTTGA
Protein sequenceShow/hide protein sequence
MSREMPQKLSKIAMDNFEESIRGDNSETKNPSYCHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFDWCDPEVSEHSKEVIIKLRDEVGQLKKIAQNLRRLEWLY
RVIIIVLVGILVIVFGF