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Spg005801 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg005801
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold11:114675..117432
RNA-Seq ExpressionSpg005801
SyntenySpg005801
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044237 - cellular metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
GO:0097159 - organic cyclic compound binding (molecular function)
GO:1901363 - heterocyclic compound binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031952.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]2.2e-1445.36Show/hide
Query:  KQARIQVKTNLCGFMPATIEIKDSYKGNIYLNFGDVSILDSPKIIHHSLELSDFSNPMDLFRIKQVMEDEGFDSQIQNPDVEYYGKFLEIPSVSRDP
        ++A+IQ K NLCGF+PATIEI D  +GNI+LNFG +S+ + P  +   L   +FSN +D+ R+ QVM+DEG       P  +Y      IPS+ R+P
Subjt:  KQARIQVKTNLCGFMPATIEIKDSYKGNIYLNFGDVSILDSPKIIHHSLELSDFSNPMDLFRIKQVMEDEGFDSQIQNPDVEYYGKFLEIPSVSRDP

KAA0047189.1 hypothetical protein E6C27_scaffold83G00690 [Cucumis melo var. makuwa]7.8e-2836.14Show/hide
Query:  SSVLRKRKVTYRIRKNQEVLNVNFADFWVVSRLFAHNSWKDIIEVLEFHFKSKISVNPLFAVKALLKFEDDKVVSSLDTVGKWKVSSNFHLLLEKWNK--
        SS L   K    + +N EV++ NF + W++++LFA +  + I ++LE +F++KI +NPLF   AL+  ++  +   +   GKW+V  +F+L  EKW+K  
Subjt:  SSVLRKRKVTYRIRKNQEVLNVNFADFWVVSRLFAHNSWKDIIEVLEFHFKSKISVNPLFAVKALLKFEDDKVVSSLDTVGKWKVSSNFHLLLEKWNK--

Query:  -----------------------------KQARIQVKTNLCGFMPATIEIKDSYKGNIYLNFGDVSILDSPKIIHHSLELSDFSNPMDLFRIKQVMEDEG
                                      +ARIQVK NLCGF+P+TIEI D  +GNI+LNFGD   L+ P     ++ +SDF   + L RI +V++DEG
Subjt:  -----------------------------KQARIQVKTNLCGFMPATIEIKDSYKGNIYLNFGDVSILDSPKIIHHSLELSDFSNPMDLFRIKQVMEDEG

Query:  FD
         D
Subjt:  FD

KAA0063414.1 uncharacterized protein E6C27_scaffold508G00510 [Cucumis melo var. makuwa]2.7e-2030.96Show/hide
Query:  GWFLRSVVWPFSGGRQFIHVPIGNSKVGCSLFKELVVD---------SIRSLMVSNAPVASGENSSV---LRKRKVTYRIRKNQEVLNVNFADFWVVSRL
        GW LR  VWP SGGR ++H+P+G ++ G   F  ++ D          IR   V    + +   S +     K K +  + KN EVL  +F    ++  +
Subjt:  GWFLRSVVWPFSGGRQFIHVPIGNSKVGCSLFKELVVD---------SIRSLMVSNAPVASGENSSV---LRKRKVTYRIRKNQEVLNVNFADFWVVSRL

Query:  FAHNSWKDIIEVLEFHFKSKISVNPLFAVKALLKFEDDKVVSSLDTVGKWKVSSNFHLLLEKWNKKQARIQVKTNLCGFMPATIEIKDSYKGNIYLNFGD
          +  W  I  +        +    +   KA+  F       SL T             +   N  +A+I+V  NLCGF+PA +E++D+++ NI+LNFGD
Subjt:  FAHNSWKDIIEVLEFHFKSKISVNPLFAVKALLKFEDDKVVSSLDTVGKWKVSSNFHLLLEKWNKKQARIQVKTNLCGFMPATIEIKDSYKGNIYLNFGD

Query:  VSILDSPKIIHHSLELSDFSNPMDLFRIKQVMEDEGFDS
        + +L++PK+I  +L +S  +N +DL RI QV+ DEG +S
Subjt:  VSILDSPKIIHHSLELSDFSNPMDLFRIKQVMEDEGFDS

TYJ99818.1 kinesin heavy chain-like [Cucumis melo var. makuwa]1.7e-2238.22Show/hide
Query:  KNQEVLNVNFADFWVVSRLFAHNSWKDIIEVLEFHFKSKISVNPLFAVKALLKFEDDKVVSSLDTVGKWKVSSNFHLLLEKWNKKQARIQVKTNLCGFMP
        +N EV   NF   W+V+++FA + W+ I + LE +F++KI +NPLF   A +  + D +   +   GKW+               +ARIQVK N CGF+P
Subjt:  KNQEVLNVNFADFWVVSRLFAHNSWKDIIEVLEFHFKSKISVNPLFAVKALLKFEDDKVVSSLDTVGKWKVSSNFHLLLEKWNKKQARIQVKTNLCGFMP

Query:  ATIEIKDSYKGNIYLNFGD---VSILDSPKIIHHSLELSDFSNPMDLFRIKQVMEDE
        +TIEI +  +GNI+ NFGD    ++L    ++  SL +  F+NP DL RI++V++DE
Subjt:  ATIEIKDSYKGNIYLNFGD---VSILDSPKIIHHSLELSDFSNPMDLFRIKQVMEDE

TYK16775.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]9.9e-1545.45Show/hide
Query:  NKKQARIQVKTNLCGFMPATIEIKDSYKGNIYLNFGDVSILDSPKIIHHSLELSDFSNPMDLFRIKQVMEDEGFDSQIQNPDVEYYGKFLEIPSVSRDP
        N  +A+IQ K NLCGF+PATIEI D  +GNI+LNFG +S+ + P  +   L   +FSN +D+ R+ QVM+DEG       P  +Y      IPS+ R+P
Subjt:  NKKQARIQVKTNLCGFMPATIEIKDSYKGNIYLNFGDVSILDSPKIIHHSLELSDFSNPMDLFRIKQVMEDEGFDSQIQNPDVEYYGKFLEIPSVSRDP

TrEMBL top hitse value%identityAlignment
A0A5A7SLN9 Retrotransposable element Tf21.1e-1445.36Show/hide
Query:  KQARIQVKTNLCGFMPATIEIKDSYKGNIYLNFGDVSILDSPKIIHHSLELSDFSNPMDLFRIKQVMEDEGFDSQIQNPDVEYYGKFLEIPSVSRDP
        ++A+IQ K NLCGF+PATIEI D  +GNI+LNFG +S+ + P  +   L   +FSN +D+ R+ QVM+DEG       P  +Y      IPS+ R+P
Subjt:  KQARIQVKTNLCGFMPATIEIKDSYKGNIYLNFGDVSILDSPKIIHHSLELSDFSNPMDLFRIKQVMEDEGFDSQIQNPDVEYYGKFLEIPSVSRDP

A0A5A7U128 Uncharacterized protein3.8e-2836.14Show/hide
Query:  SSVLRKRKVTYRIRKNQEVLNVNFADFWVVSRLFAHNSWKDIIEVLEFHFKSKISVNPLFAVKALLKFEDDKVVSSLDTVGKWKVSSNFHLLLEKWNK--
        SS L   K    + +N EV++ NF + W++++LFA +  + I ++LE +F++KI +NPLF   AL+  ++  +   +   GKW+V  +F+L  EKW+K  
Subjt:  SSVLRKRKVTYRIRKNQEVLNVNFADFWVVSRLFAHNSWKDIIEVLEFHFKSKISVNPLFAVKALLKFEDDKVVSSLDTVGKWKVSSNFHLLLEKWNK--

Query:  -----------------------------KQARIQVKTNLCGFMPATIEIKDSYKGNIYLNFGDVSILDSPKIIHHSLELSDFSNPMDLFRIKQVMEDEG
                                      +ARIQVK NLCGF+P+TIEI D  +GNI+LNFGD   L+ P     ++ +SDF   + L RI +V++DEG
Subjt:  -----------------------------KQARIQVKTNLCGFMPATIEIKDSYKGNIYLNFGDVSILDSPKIIHHSLELSDFSNPMDLFRIKQVMEDEG

Query:  FD
         D
Subjt:  FD

A0A5A7V878 DUF4283 domain-containing protein1.3e-2030.96Show/hide
Query:  GWFLRSVVWPFSGGRQFIHVPIGNSKVGCSLFKELVVD---------SIRSLMVSNAPVASGENSSV---LRKRKVTYRIRKNQEVLNVNFADFWVVSRL
        GW LR  VWP SGGR ++H+P+G ++ G   F  ++ D          IR   V    + +   S +     K K +  + KN EVL  +F    ++  +
Subjt:  GWFLRSVVWPFSGGRQFIHVPIGNSKVGCSLFKELVVD---------SIRSLMVSNAPVASGENSSV---LRKRKVTYRIRKNQEVLNVNFADFWVVSRL

Query:  FAHNSWKDIIEVLEFHFKSKISVNPLFAVKALLKFEDDKVVSSLDTVGKWKVSSNFHLLLEKWNKKQARIQVKTNLCGFMPATIEIKDSYKGNIYLNFGD
          +  W  I  +        +    +   KA+  F       SL T             +   N  +A+I+V  NLCGF+PA +E++D+++ NI+LNFGD
Subjt:  FAHNSWKDIIEVLEFHFKSKISVNPLFAVKALLKFEDDKVVSSLDTVGKWKVSSNFHLLLEKWNKKQARIQVKTNLCGFMPATIEIKDSYKGNIYLNFGD

Query:  VSILDSPKIIHHSLELSDFSNPMDLFRIKQVMEDEGFDS
        + +L++PK+I  +L +S  +N +DL RI QV+ DEG +S
Subjt:  VSILDSPKIIHHSLELSDFSNPMDLFRIKQVMEDEGFDS

A0A5D3BNW8 Kinesin heavy chain-like8.2e-2338.22Show/hide
Query:  KNQEVLNVNFADFWVVSRLFAHNSWKDIIEVLEFHFKSKISVNPLFAVKALLKFEDDKVVSSLDTVGKWKVSSNFHLLLEKWNKKQARIQVKTNLCGFMP
        +N EV   NF   W+V+++FA + W+ I + LE +F++KI +NPLF   A +  + D +   +   GKW+               +ARIQVK N CGF+P
Subjt:  KNQEVLNVNFADFWVVSRLFAHNSWKDIIEVLEFHFKSKISVNPLFAVKALLKFEDDKVVSSLDTVGKWKVSSNFHLLLEKWNKKQARIQVKTNLCGFMP

Query:  ATIEIKDSYKGNIYLNFGD---VSILDSPKIIHHSLELSDFSNPMDLFRIKQVMEDE
        +TIEI +  +GNI+ NFGD    ++L    ++  SL +  F+NP DL RI++V++DE
Subjt:  ATIEIKDSYKGNIYLNFGD---VSILDSPKIIHHSLELSDFSNPMDLFRIKQVMEDE

A0A5D3CZ35 DNA/RNA polymerases superfamily protein4.8e-1545.45Show/hide
Query:  NKKQARIQVKTNLCGFMPATIEIKDSYKGNIYLNFGDVSILDSPKIIHHSLELSDFSNPMDLFRIKQVMEDEGFDSQIQNPDVEYYGKFLEIPSVSRDP
        N  +A+IQ K NLCGF+PATIEI D  +GNI+LNFG +S+ + P  +   L   +FSN +D+ R+ QVM+DEG       P  +Y      IPS+ R+P
Subjt:  NKKQARIQVKTNLCGFMPATIEIKDSYKGNIYLNFGDVSILDSPKIIHHSLELSDFSNPMDLFRIKQVMEDEGFDSQIQNPDVEYYGKFLEIPSVSRDP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAAGCAAAGTACTGAAAATGGTTTAAATTTTCTTTTAGTCCCTTGCGTACAGGAGCTTAAATGCAGAGGGCAGACTTCAAACCTCAATGGGCTTCTCTCTCCCTC
GATTATCTTTGTTTCCATGATGGGGAAACTCCAAATCGTCTCTTCCTCCAGCATCCCTTTGCGGCCAGAGGGTAGTTATTTACGGACATTTTTGTTACCCCTGAGCTTGT
ATTTTCGATCTGAAAGTCATGGAGGTGATAAGTCGCAAGATTATGAACTCTTTTTATTGCGTTTGGTCTGGAGAGGAACGTTTTTTTGTGGAAGATATGGCTTTCAACAA
GCAATTTTGGGATGCTTTTGGGTAATTCGTTTAGGCAAACTTCGTTCTTCTTCAGGCTGGTTTTTGCGCAGTGTTGTTTGGCCTTTTTCAGGTGGTAGACAATTCATCCA
TGTGCCAATTGGAAATTCCAAAGTGGGTTGTTCTTTATTCAAGGAGCTTGTGGTCGATTCCATTAGGAGTTTAATGGTTTCTAATGCTCCAGTAGCTTCTGGGGAGAATT
CTTCAGTTCTTCGAAAACGTAAGGTTACTTACCGGATTAGAAAAAATCAGGAGGTTTTGAATGTTAATTTTGCAGATTTTTGGGTGGTGTCCAGATTATTTGCCCACAAT
AGTTGGAAAGATATTATTGAGGTTTTGGAGTTTCATTTCAAATCAAAGATTTCGGTCAATCCGCTTTTTGCAGTTAAAGCATTGCTCAAATTTGAAGATGATAAAGTTGT
TAGTTCATTAGATACGGTTGGGAAATGGAAGGTCTCTAGTAATTTTCATCTTTTGCTTGAAAAATGGAACAAAAAGCAAGCTAGAATTCAGGTTAAAACAAACTTATGTG
GTTTTATGCCGGCTACTATTGAAATTAAAGATAGTTACAAAGGGAATATTTATCTTAATTTTGGCGATGTGTCTATTCTGGATTCTCCGAAAATTATTCACCATAGCCTT
GAGTTGAGTGATTTTTCCAATCCAATGGACCTTTTTAGAATCAAACAAGTAATGGAAGATGAAGGGTTTGATTCTCAAATTCAAAATCCAGATGTTGAATACTATGGAAA
ATTTCTGGAAATTCCTTCTGTATCAAGGGACCCTAAGGTAATTTACAAGTTTGTTCAATTACCTTGTGATGTTTGTAATATGAAAGGGCTTTCTGTTTTGCCAAACATTT
CTGAAGTTGAAGAGTCAACAAAATTAAATTTTGATGATGATTTATTGTCAAGAAAGTCCTTTTCAGATCCCCTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGAAAGCAAAGTACTGAAAATGGTTTAAATTTTCTTTTAGTCCCTTGCGTACAGGAGCTTAAATGCAGAGGGCAGACTTCAAACCTCAATGGGCTTCTCTCTCCCTC
GATTATCTTTGTTTCCATGATGGGGAAACTCCAAATCGTCTCTTCCTCCAGCATCCCTTTGCGGCCAGAGGGTAGTTATTTACGGACATTTTTGTTACCCCTGAGCTTGT
ATTTTCGATCTGAAAGTCATGGAGGTGATAAGTCGCAAGATTATGAACTCTTTTTATTGCGTTTGGTCTGGAGAGGAACGTTTTTTTGTGGAAGATATGGCTTTCAACAA
GCAATTTTGGGATGCTTTTGGGTAATTCGTTTAGGCAAACTTCGTTCTTCTTCAGGCTGGTTTTTGCGCAGTGTTGTTTGGCCTTTTTCAGGTGGTAGACAATTCATCCA
TGTGCCAATTGGAAATTCCAAAGTGGGTTGTTCTTTATTCAAGGAGCTTGTGGTCGATTCCATTAGGAGTTTAATGGTTTCTAATGCTCCAGTAGCTTCTGGGGAGAATT
CTTCAGTTCTTCGAAAACGTAAGGTTACTTACCGGATTAGAAAAAATCAGGAGGTTTTGAATGTTAATTTTGCAGATTTTTGGGTGGTGTCCAGATTATTTGCCCACAAT
AGTTGGAAAGATATTATTGAGGTTTTGGAGTTTCATTTCAAATCAAAGATTTCGGTCAATCCGCTTTTTGCAGTTAAAGCATTGCTCAAATTTGAAGATGATAAAGTTGT
TAGTTCATTAGATACGGTTGGGAAATGGAAGGTCTCTAGTAATTTTCATCTTTTGCTTGAAAAATGGAACAAAAAGCAAGCTAGAATTCAGGTTAAAACAAACTTATGTG
GTTTTATGCCGGCTACTATTGAAATTAAAGATAGTTACAAAGGGAATATTTATCTTAATTTTGGCGATGTGTCTATTCTGGATTCTCCGAAAATTATTCACCATAGCCTT
GAGTTGAGTGATTTTTCCAATCCAATGGACCTTTTTAGAATCAAACAAGTAATGGAAGATGAAGGGTTTGATTCTCAAATTCAAAATCCAGATGTTGAATACTATGGAAA
ATTTCTGGAAATTCCTTCTGTATCAAGGGACCCTAAGGTAATTTACAAGTTTGTTCAATTACCTTGTGATGTTTGTAATATGAAAGGGCTTTCTGTTTTGCCAAACATTT
CTGAAGTTGAAGAGTCAACAAAATTAAATTTTGATGATGATTTATTGTCAAGAAAGTCCTTTTCAGATCCCCTGTAA
Protein sequenceShow/hide protein sequence
MGKQSTENGLNFLLVPCVQELKCRGQTSNLNGLLSPSIIFVSMMGKLQIVSSSSIPLRPEGSYLRTFLLPLSLYFRSESHGGDKSQDYELFLLRLVWRGTFFCGRYGFQQ
AILGCFWVIRLGKLRSSSGWFLRSVVWPFSGGRQFIHVPIGNSKVGCSLFKELVVDSIRSLMVSNAPVASGENSSVLRKRKVTYRIRKNQEVLNVNFADFWVVSRLFAHN
SWKDIIEVLEFHFKSKISVNPLFAVKALLKFEDDKVVSSLDTVGKWKVSSNFHLLLEKWNKKQARIQVKTNLCGFMPATIEIKDSYKGNIYLNFGDVSILDSPKIIHHSL
ELSDFSNPMDLFRIKQVMEDEGFDSQIQNPDVEYYGKFLEIPSVSRDPKVIYKFVQLPCDVCNMKGLSVLPNISEVEESTKLNFDDDLLSRKSFSDPL