; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg005803 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg005803
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDExH-box ATP-dependent RNA helicase DExH11
Genome locationscaffold11:1290733..1294806
RNA-Seq ExpressionSpg005803
SyntenySpg005803
Gene Ontology termsGO:0070478 - nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay (biological process)
GO:0055087 - Ski complex (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003724 - RNA helicase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsIPR012961 - ATP-dependent RNA helicase Ski2, C-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_023524999.1 DExH-box ATP-dependent RNA helicase DExH11 isoform X1 [Cucurbita pepo subsp. pepo]3.7e-13894.42Show/hide
Query:  LTVMQDLKLKDVNLVEAYKVWTDLLLKKVANKCHGCIKLVEHLKLAAEIKKHKEEVNNLKFQMSDEALQQMPDFQGRIDVLKDIGCINADLVVQIKGRVA
        L  ++DLKLKDVNLVEAYK WTDL+LK VANKCHGCIKL EHLKLA+EIKKHKEEVNNLKFQMSDEALQQMPDFQGRIDVLK+IGCINADLVVQIKGRVA
Subjt:  LTVMQDLKLKDVNLVEAYKVWTDLLLKKVANKCHGCIKLVEHLKLAAEIKKHKEEVNNLKFQMSDEALQQMPDFQGRIDVLKDIGCINADLVVQIKGRVA

Query:  CEMNSGEELICTECLFENQLDDLEPEEAVALMSAFVFQQKNTSEPSLTPKLSMAKKRLYETAIRLGQLQAQFRLQVDPEEYARDNLKFGLVEVVYEWAKG
        CEMNSGEELICTECLFENQLDDLEPEEAVALMSAFVFQQ+NTSEPSLTPKLSMAKKRLYETAIRLG+LQAQFRL VD EEYARDNLKFGLVEVVYEWAKG
Subjt:  CEMNSGEELICTECLFENQLDDLEPEEAVALMSAFVFQQKNTSEPSLTPKLSMAKKRLYETAIRLGQLQAQFRLQVDPEEYARDNLKFGLVEVVYEWAKG

Query:  TPFADICELTDVPEGMIVRTIVRLDETCREFKNAAAIMGNSALHKKMETASNAIKRDIVFAASLYITGL
        TPFADICELTDVPEGMIVRTIVRLDETCREFKNAAAIMGNSALHKKMETASNAIKRDIVF+ASLYITGL
Subjt:  TPFADICELTDVPEGMIVRTIVRLDETCREFKNAAAIMGNSALHKKMETASNAIKRDIVFAASLYITGL

XP_038896037.1 DExH-box ATP-dependent RNA helicase DExH11 isoform X1 [Benincasa hispida]5.7e-13995.54Show/hide
Query:  LTVMQDLKLKDVNLVEAYKVWTDLLLKKVANKCHGCIKLVEHLKLAAEIKKHKEEVNNLKFQMSDEALQQMPDFQGRIDVLKDIGCINADLVVQIKGRVA
        L  ++DLKLKDVNLVEAYK  TD+ LK V NKCHGCIKL EHLKLAAEIKKHKEEVNNLKFQMSDEALQQMPDFQGRIDVLK+IGCINADLVVQIKGRVA
Subjt:  LTVMQDLKLKDVNLVEAYKVWTDLLLKKVANKCHGCIKLVEHLKLAAEIKKHKEEVNNLKFQMSDEALQQMPDFQGRIDVLKDIGCINADLVVQIKGRVA

Query:  CEMNSGEELICTECLFENQLDDLEPEEAVALMSAFVFQQKNTSEPSLTPKLSMAKKRLYETAIRLGQLQAQFRLQVDPEEYARDNLKFGLVEVVYEWAKG
        CEMNSGEELICTECLFENQLDDLEPEEAVALMSAFVFQQKNTSEPSLTPKLSMAKKRLYETAIRLGQLQAQFRLQVDPEEYARDNLKFGLVEVVYEWAKG
Subjt:  CEMNSGEELICTECLFENQLDDLEPEEAVALMSAFVFQQKNTSEPSLTPKLSMAKKRLYETAIRLGQLQAQFRLQVDPEEYARDNLKFGLVEVVYEWAKG

Query:  TPFADICELTDVPEGMIVRTIVRLDETCREFKNAAAIMGNSALHKKMETASNAIKRDIVFAASLYITGL
        TPFADICELTDVPEGMIVRTIVRLDETCREFKNAAAIMGNSALHKKMETASNAIKRDIVFAASLYITGL
Subjt:  TPFADICELTDVPEGMIVRTIVRLDETCREFKNAAAIMGNSALHKKMETASNAIKRDIVFAASLYITGL

XP_038896038.1 DExH-box ATP-dependent RNA helicase DExH11 isoform X2 [Benincasa hispida]5.7e-13995.54Show/hide
Query:  LTVMQDLKLKDVNLVEAYKVWTDLLLKKVANKCHGCIKLVEHLKLAAEIKKHKEEVNNLKFQMSDEALQQMPDFQGRIDVLKDIGCINADLVVQIKGRVA
        L  ++DLKLKDVNLVEAYK  TD+ LK V NKCHGCIKL EHLKLAAEIKKHKEEVNNLKFQMSDEALQQMPDFQGRIDVLK+IGCINADLVVQIKGRVA
Subjt:  LTVMQDLKLKDVNLVEAYKVWTDLLLKKVANKCHGCIKLVEHLKLAAEIKKHKEEVNNLKFQMSDEALQQMPDFQGRIDVLKDIGCINADLVVQIKGRVA

Query:  CEMNSGEELICTECLFENQLDDLEPEEAVALMSAFVFQQKNTSEPSLTPKLSMAKKRLYETAIRLGQLQAQFRLQVDPEEYARDNLKFGLVEVVYEWAKG
        CEMNSGEELICTECLFENQLDDLEPEEAVALMSAFVFQQKNTSEPSLTPKLSMAKKRLYETAIRLGQLQAQFRLQVDPEEYARDNLKFGLVEVVYEWAKG
Subjt:  CEMNSGEELICTECLFENQLDDLEPEEAVALMSAFVFQQKNTSEPSLTPKLSMAKKRLYETAIRLGQLQAQFRLQVDPEEYARDNLKFGLVEVVYEWAKG

Query:  TPFADICELTDVPEGMIVRTIVRLDETCREFKNAAAIMGNSALHKKMETASNAIKRDIVFAASLYITGL
        TPFADICELTDVPEGMIVRTIVRLDETCREFKNAAAIMGNSALHKKMETASNAIKRDIVFAASLYITGL
Subjt:  TPFADICELTDVPEGMIVRTIVRLDETCREFKNAAAIMGNSALHKKMETASNAIKRDIVFAASLYITGL

XP_038896039.1 DExH-box ATP-dependent RNA helicase DExH11 isoform X3 [Benincasa hispida]5.7e-13995.54Show/hide
Query:  LTVMQDLKLKDVNLVEAYKVWTDLLLKKVANKCHGCIKLVEHLKLAAEIKKHKEEVNNLKFQMSDEALQQMPDFQGRIDVLKDIGCINADLVVQIKGRVA
        L  ++DLKLKDVNLVEAYK  TD+ LK V NKCHGCIKL EHLKLAAEIKKHKEEVNNLKFQMSDEALQQMPDFQGRIDVLK+IGCINADLVVQIKGRVA
Subjt:  LTVMQDLKLKDVNLVEAYKVWTDLLLKKVANKCHGCIKLVEHLKLAAEIKKHKEEVNNLKFQMSDEALQQMPDFQGRIDVLKDIGCINADLVVQIKGRVA

Query:  CEMNSGEELICTECLFENQLDDLEPEEAVALMSAFVFQQKNTSEPSLTPKLSMAKKRLYETAIRLGQLQAQFRLQVDPEEYARDNLKFGLVEVVYEWAKG
        CEMNSGEELICTECLFENQLDDLEPEEAVALMSAFVFQQKNTSEPSLTPKLSMAKKRLYETAIRLGQLQAQFRLQVDPEEYARDNLKFGLVEVVYEWAKG
Subjt:  CEMNSGEELICTECLFENQLDDLEPEEAVALMSAFVFQQKNTSEPSLTPKLSMAKKRLYETAIRLGQLQAQFRLQVDPEEYARDNLKFGLVEVVYEWAKG

Query:  TPFADICELTDVPEGMIVRTIVRLDETCREFKNAAAIMGNSALHKKMETASNAIKRDIVFAASLYITGL
        TPFADICELTDVPEGMIVRTIVRLDETCREFKNAAAIMGNSALHKKMETASNAIKRDIVFAASLYITGL
Subjt:  TPFADICELTDVPEGMIVRTIVRLDETCREFKNAAAIMGNSALHKKMETASNAIKRDIVFAASLYITGL

XP_038896040.1 DExH-box ATP-dependent RNA helicase DExH11 isoform X4 [Benincasa hispida]5.7e-13995.54Show/hide
Query:  LTVMQDLKLKDVNLVEAYKVWTDLLLKKVANKCHGCIKLVEHLKLAAEIKKHKEEVNNLKFQMSDEALQQMPDFQGRIDVLKDIGCINADLVVQIKGRVA
        L  ++DLKLKDVNLVEAYK  TD+ LK V NKCHGCIKL EHLKLAAEIKKHKEEVNNLKFQMSDEALQQMPDFQGRIDVLK+IGCINADLVVQIKGRVA
Subjt:  LTVMQDLKLKDVNLVEAYKVWTDLLLKKVANKCHGCIKLVEHLKLAAEIKKHKEEVNNLKFQMSDEALQQMPDFQGRIDVLKDIGCINADLVVQIKGRVA

Query:  CEMNSGEELICTECLFENQLDDLEPEEAVALMSAFVFQQKNTSEPSLTPKLSMAKKRLYETAIRLGQLQAQFRLQVDPEEYARDNLKFGLVEVVYEWAKG
        CEMNSGEELICTECLFENQLDDLEPEEAVALMSAFVFQQKNTSEPSLTPKLSMAKKRLYETAIRLGQLQAQFRLQVDPEEYARDNLKFGLVEVVYEWAKG
Subjt:  CEMNSGEELICTECLFENQLDDLEPEEAVALMSAFVFQQKNTSEPSLTPKLSMAKKRLYETAIRLGQLQAQFRLQVDPEEYARDNLKFGLVEVVYEWAKG

Query:  TPFADICELTDVPEGMIVRTIVRLDETCREFKNAAAIMGNSALHKKMETASNAIKRDIVFAASLYITGL
        TPFADICELTDVPEGMIVRTIVRLDETCREFKNAAAIMGNSALHKKMETASNAIKRDIVFAASLYITGL
Subjt:  TPFADICELTDVPEGMIVRTIVRLDETCREFKNAAAIMGNSALHKKMETASNAIKRDIVFAASLYITGL

TrEMBL top hitse value%identityAlignment
A0A5A7SQR7 DExH-box ATP-dependent RNA helicase DExH113.1e-13894.42Show/hide
Query:  LTVMQDLKLKDVNLVEAYKVWTDLLLKKVANKCHGCIKLVEHLKLAAEIKKHKEEVNNLKFQMSDEALQQMPDFQGRIDVLKDIGCINADLVVQIKGRVA
        L  ++DLKLKDVNLVEAYK  TD+ LK VANKCHGCIKL EHLKLAAEIKKHKEEVNNLKFQMSDEALQQMPDFQGRIDVLK+IGCIN+DLVVQ+KGRVA
Subjt:  LTVMQDLKLKDVNLVEAYKVWTDLLLKKVANKCHGCIKLVEHLKLAAEIKKHKEEVNNLKFQMSDEALQQMPDFQGRIDVLKDIGCINADLVVQIKGRVA

Query:  CEMNSGEELICTECLFENQLDDLEPEEAVALMSAFVFQQKNTSEPSLTPKLSMAKKRLYETAIRLGQLQAQFRLQVDPEEYARDNLKFGLVEVVYEWAKG
        CEMNSGEELICTECLFENQLD LEPEEAVALMSAFVFQQKNTSEPSLTPKLSMAKKRLYETAIRLGQLQAQFRLQ+DPEEYARDNLKFGLVEVVYEWAKG
Subjt:  CEMNSGEELICTECLFENQLDDLEPEEAVALMSAFVFQQKNTSEPSLTPKLSMAKKRLYETAIRLGQLQAQFRLQVDPEEYARDNLKFGLVEVVYEWAKG

Query:  TPFADICELTDVPEGMIVRTIVRLDETCREFKNAAAIMGNSALHKKMETASNAIKRDIVFAASLYITGL
        TPFADICELTDVPEGMIVRTIVRLDETCREFKNAAAIMGNSALHKKMETASNAIKRDIVFAASLYITGL
Subjt:  TPFADICELTDVPEGMIVRTIVRLDETCREFKNAAAIMGNSALHKKMETASNAIKRDIVFAASLYITGL

A0A6J1K6C8 DExH-box ATP-dependent RNA helicase DExH11 isoform X11.8e-13894.42Show/hide
Query:  LTVMQDLKLKDVNLVEAYKVWTDLLLKKVANKCHGCIKLVEHLKLAAEIKKHKEEVNNLKFQMSDEALQQMPDFQGRIDVLKDIGCINADLVVQIKGRVA
        L  ++DLKLKDVNLVEAYK WTDL+LK VANKCHGCIKL EHLKLA+EIKKHKEEVNNLKFQMSDEALQQMPDFQGRIDVLK+IGCINADLVVQIKGRVA
Subjt:  LTVMQDLKLKDVNLVEAYKVWTDLLLKKVANKCHGCIKLVEHLKLAAEIKKHKEEVNNLKFQMSDEALQQMPDFQGRIDVLKDIGCINADLVVQIKGRVA

Query:  CEMNSGEELICTECLFENQLDDLEPEEAVALMSAFVFQQKNTSEPSLTPKLSMAKKRLYETAIRLGQLQAQFRLQVDPEEYARDNLKFGLVEVVYEWAKG
        CEMNSGEELICTECLFENQLDDLEPEEAVALMSAFVFQQ+NTSEPSLTPKLSMAKKRLYETAIRLG+LQAQFRL VD EEYARDNLKFGLVEVVYEWAKG
Subjt:  CEMNSGEELICTECLFENQLDDLEPEEAVALMSAFVFQQKNTSEPSLTPKLSMAKKRLYETAIRLGQLQAQFRLQVDPEEYARDNLKFGLVEVVYEWAKG

Query:  TPFADICELTDVPEGMIVRTIVRLDETCREFKNAAAIMGNSALHKKMETASNAIKRDIVFAASLYITGL
        TPFADICELTDVPEGMIVRTIVRLDETCREFKNAAAIMGNSALHKKMETASNAIKRDIVF+ASLYITGL
Subjt:  TPFADICELTDVPEGMIVRTIVRLDETCREFKNAAAIMGNSALHKKMETASNAIKRDIVFAASLYITGL

A0A6J1KB75 DExH-box ATP-dependent RNA helicase DExH11 isoform X41.8e-13894.42Show/hide
Query:  LTVMQDLKLKDVNLVEAYKVWTDLLLKKVANKCHGCIKLVEHLKLAAEIKKHKEEVNNLKFQMSDEALQQMPDFQGRIDVLKDIGCINADLVVQIKGRVA
        L  ++DLKLKDVNLVEAYK WTDL+LK VANKCHGCIKL EHLKLA+EIKKHKEEVNNLKFQMSDEALQQMPDFQGRIDVLK+IGCINADLVVQIKGRVA
Subjt:  LTVMQDLKLKDVNLVEAYKVWTDLLLKKVANKCHGCIKLVEHLKLAAEIKKHKEEVNNLKFQMSDEALQQMPDFQGRIDVLKDIGCINADLVVQIKGRVA

Query:  CEMNSGEELICTECLFENQLDDLEPEEAVALMSAFVFQQKNTSEPSLTPKLSMAKKRLYETAIRLGQLQAQFRLQVDPEEYARDNLKFGLVEVVYEWAKG
        CEMNSGEELICTECLFENQLDDLEPEEAVALMSAFVFQQ+NTSEPSLTPKLSMAKKRLYETAIRLG+LQAQFRL VD EEYARDNLKFGLVEVVYEWAKG
Subjt:  CEMNSGEELICTECLFENQLDDLEPEEAVALMSAFVFQQKNTSEPSLTPKLSMAKKRLYETAIRLGQLQAQFRLQVDPEEYARDNLKFGLVEVVYEWAKG

Query:  TPFADICELTDVPEGMIVRTIVRLDETCREFKNAAAIMGNSALHKKMETASNAIKRDIVFAASLYITGL
        TPFADICELTDVPEGMIVRTIVRLDETCREFKNAAAIMGNSALHKKMETASNAIKRDIVF+ASLYITGL
Subjt:  TPFADICELTDVPEGMIVRTIVRLDETCREFKNAAAIMGNSALHKKMETASNAIKRDIVFAASLYITGL

A0A6J1KCV3 DExH-box ATP-dependent RNA helicase DExH11 isoform X31.8e-13894.42Show/hide
Query:  LTVMQDLKLKDVNLVEAYKVWTDLLLKKVANKCHGCIKLVEHLKLAAEIKKHKEEVNNLKFQMSDEALQQMPDFQGRIDVLKDIGCINADLVVQIKGRVA
        L  ++DLKLKDVNLVEAYK WTDL+LK VANKCHGCIKL EHLKLA+EIKKHKEEVNNLKFQMSDEALQQMPDFQGRIDVLK+IGCINADLVVQIKGRVA
Subjt:  LTVMQDLKLKDVNLVEAYKVWTDLLLKKVANKCHGCIKLVEHLKLAAEIKKHKEEVNNLKFQMSDEALQQMPDFQGRIDVLKDIGCINADLVVQIKGRVA

Query:  CEMNSGEELICTECLFENQLDDLEPEEAVALMSAFVFQQKNTSEPSLTPKLSMAKKRLYETAIRLGQLQAQFRLQVDPEEYARDNLKFGLVEVVYEWAKG
        CEMNSGEELICTECLFENQLDDLEPEEAVALMSAFVFQQ+NTSEPSLTPKLSMAKKRLYETAIRLG+LQAQFRL VD EEYARDNLKFGLVEVVYEWAKG
Subjt:  CEMNSGEELICTECLFENQLDDLEPEEAVALMSAFVFQQKNTSEPSLTPKLSMAKKRLYETAIRLGQLQAQFRLQVDPEEYARDNLKFGLVEVVYEWAKG

Query:  TPFADICELTDVPEGMIVRTIVRLDETCREFKNAAAIMGNSALHKKMETASNAIKRDIVFAASLYITGL
        TPFADICELTDVPEGMIVRTIVRLDETCREFKNAAAIMGNSALHKKMETASNAIKRDIVF+ASLYITGL
Subjt:  TPFADICELTDVPEGMIVRTIVRLDETCREFKNAAAIMGNSALHKKMETASNAIKRDIVFAASLYITGL

A0A6J1KFA8 DExH-box ATP-dependent RNA helicase DExH11 isoform X21.8e-13894.42Show/hide
Query:  LTVMQDLKLKDVNLVEAYKVWTDLLLKKVANKCHGCIKLVEHLKLAAEIKKHKEEVNNLKFQMSDEALQQMPDFQGRIDVLKDIGCINADLVVQIKGRVA
        L  ++DLKLKDVNLVEAYK WTDL+LK VANKCHGCIKL EHLKLA+EIKKHKEEVNNLKFQMSDEALQQMPDFQGRIDVLK+IGCINADLVVQIKGRVA
Subjt:  LTVMQDLKLKDVNLVEAYKVWTDLLLKKVANKCHGCIKLVEHLKLAAEIKKHKEEVNNLKFQMSDEALQQMPDFQGRIDVLKDIGCINADLVVQIKGRVA

Query:  CEMNSGEELICTECLFENQLDDLEPEEAVALMSAFVFQQKNTSEPSLTPKLSMAKKRLYETAIRLGQLQAQFRLQVDPEEYARDNLKFGLVEVVYEWAKG
        CEMNSGEELICTECLFENQLDDLEPEEAVALMSAFVFQQ+NTSEPSLTPKLSMAKKRLYETAIRLG+LQAQFRL VD EEYARDNLKFGLVEVVYEWAKG
Subjt:  CEMNSGEELICTECLFENQLDDLEPEEAVALMSAFVFQQKNTSEPSLTPKLSMAKKRLYETAIRLGQLQAQFRLQVDPEEYARDNLKFGLVEVVYEWAKG

Query:  TPFADICELTDVPEGMIVRTIVRLDETCREFKNAAAIMGNSALHKKMETASNAIKRDIVFAASLYITGL
        TPFADICELTDVPEGMIVRTIVRLDETCREFKNAAAIMGNSALHKKMETASNAIKRDIVF+ASLYITGL
Subjt:  TPFADICELTDVPEGMIVRTIVRLDETCREFKNAAAIMGNSALHKKMETASNAIKRDIVFAASLYITGL

SwissProt top hitse value%identityAlignment
F4JAA5 DExH-box ATP-dependent RNA helicase DExH117.8e-12380.67Show/hide
Query:  LTVMQDLKLKDVNLVEAYKVWTDLLLKKVANKCHGCIKLVEHLKLAAEIKKHKEEVNNLKFQMSDEALQQMPDFQGRIDVLKDIGCINADLVVQIKGRVA
        L  ++DLKLKD  LVE Y  WT+LL K   NKCHGC+KL EH+KLA EIKKHK ++ +L+FQMSDEAL QMP FQGRIDVLK+IGCI+ DLVVQIKGRVA
Subjt:  LTVMQDLKLKDVNLVEAYKVWTDLLLKKVANKCHGCIKLVEHLKLAAEIKKHKEEVNNLKFQMSDEALQQMPDFQGRIDVLKDIGCINADLVVQIKGRVA

Query:  CEMNSGEELICTECLFENQLDDLEPEEAVALMSAFVFQQKNTSEPSLTPKLSMAKKRLYETAIRLGQLQAQFRLQVDPEEYARDNLKFGLVEVVYEWAKG
        CEMNSGEELICT CLFENQ ++LEPEEAVA+MSAFVFQQKNTS P+LTPKL+ AK+RLY+TAIRLG+LQAQ+ LQ+DPEEYA++NLKFGLVEVVYEWAKG
Subjt:  CEMNSGEELICTECLFENQLDDLEPEEAVALMSAFVFQQKNTSEPSLTPKLSMAKKRLYETAIRLGQLQAQFRLQVDPEEYARDNLKFGLVEVVYEWAKG

Query:  TPFADICELTDVPEGMIVRTIVRLDETCREFKNAAAIMGNSALHKKMETASNAIKRDIVFAASLYITGL
        TPFA+ICELTDVPEG+IVRTIVRLDETCREFKNAAAIMGNSALHKKM+ ASNAIKRDIVFAASLY+TG+
Subjt:  TPFADICELTDVPEGMIVRTIVRLDETCREFKNAAAIMGNSALHKKMETASNAIKRDIVFAASLYITGL

O14232 ATP-dependent RNA helicase mtr48.3e-4036.67Show/hide
Query:  LTVMQDLKLKDVNLVEAYKVWTDLLLKKVANKCHGCIKLVEHLKLAAEIKKHK--EEVNNLKFQMSD-EALQQMPDFQGRIDVLKDIGCINADLVVQIKG
        L  ++++ +K+   ++  K    L  + ++N  H   +L E  K A  ++K    EEV +LK ++S   ++ Q+ +   R  VL+ +G   +D V+++KG
Subjt:  LTVMQDLKLKDVNLVEAYKVWTDLLLKKVANKCHGCIKLVEHLKLAAEIKKHK--EEVNNLKFQMSD-EALQQMPDFQGRIDVLKDIGCINADLVVQIKG

Query:  RVACEMNSGEELICTECLFENQLDDLEPEEAVALMSAFVFQQKNTSE-PSLTPKLSMAKKRLYETAIRLGQLQAQFRLQVDPEEYARDNLKFGLVEVVYE
        RVACE++SG+ L+ TE +F    +DL PE+  AL+S  VFQ+K+  E   +  +L+   K L E A R+ ++  + + +++ EEY  ++ K  L+EVVY 
Subjt:  RVACEMNSGEELICTECLFENQLDDLEPEEAVALMSAFVFQQKNTSE-PSLTPKLSMAKKRLYETAIRLGQLQAQFRLQVDPEEYARDNLKFGLVEVVYE

Query:  WAKGTPFADICELTDVPEGMIVRTIVRLDETCREFKNAAAIMGNSALHKKMETASNAIKRDIVFAASLYI
        WA G  FA IC++TDV EG ++R   RL+E  R+  +AA ++GN++L +KME     I RDIVF+ASLY+
Subjt:  WAKGTPFADICELTDVPEGMIVRTIVRLDETCREFKNAAAIMGNSALHKKMETASNAIKRDIVFAASLYI

O59801 Putative ATP-dependent RNA helicase C550.03c7.5e-4940.77Show/hide
Query:  KLKDVNLVEAYKVWTDLLLKKVANKCHGCIKLVEHLKLAAEIKKHKEEVNNLKFQMSDEALQQMPDFQGRIDVLKDIGCINADLVVQIKGRVACEMNSGE
        K++D    EA++    L  K   N        + H  LA +  + +  ++NL   +SD+ L+ +PD++ RI VL+++G I+A+  V +KGRVACE+NS  
Subjt:  KLKDVNLVEAYKVWTDLLLKKVANKCHGCIKLVEHLKLAAEIKKHKEEVNNLKFQMSDEALQQMPDFQGRIDVLKDIGCINADLVVQIKGRVACEMNSGE

Query:  ELICTECLFENQLDDLEPEEAVALMSAFVFQQKNTSEPSLTPKLSMAKKRLYETAIRLGQLQAQFR-LQVDPEEYARDNLKFGLVEVVYEWAKGTPFADI
        EL+ TE + EN L D   EE +AL+SAFVF +K   EP+++P L   K+ +   A ++ Q+Q  ++ L  +         +FGL+EV YEWA+G  F  I
Subjt:  ELICTECLFENQLDDLEPEEAVALMSAFVFQQKNTSEPSLTPKLSMAKKRLYETAIRLGQLQAQFR-LQVDPEEYARDNLKFGLVEVVYEWAKGTPFADI

Query:  CELTDVPEGMIVRTIVRLDETCREFKNAAAIMGNSALHKKMETASNAIKRDIVFAASLYI
         +LTDV EG IVRTI+RLDE  RE + AA ++G+S+++ KME   N I+R+IVF  SLY+
Subjt:  CELTDVPEGMIVRTIVRLDETCREFKNAAAIMGNSALHKKMETASNAIKRDIVFAASLYI

P35207 Antiviral helicase SKI27.3e-4443.83Show/hide
Query:  CIKLVEHLKLAAEIKKHKEEVNNLKFQMSDEALQQMPDFQGRIDVLKDIGCINADLVVQIKGRVACEMNSGEELICTECLFENQLDDLEPEEAVALMSAF
        C  L +H+    +    K+++  L   MSD+ L  +PD++ R+ VLKD   I+ +  V +KGRVACE+NSG EL+ TE + +N L   EPEE VAL+S F
Subjt:  CIKLVEHLKLAAEIKKHKEEVNNLKFQMSDEALQQMPDFQGRIDVLKDIGCINADLVVQIKGRVACEMNSGEELICTECLFENQLDDLEPEEAVALMSAF

Query:  VFQQKNTSE--PSLTPKLSMAKKRLYETAIRLGQL--QAQFRLQVDPEEYARDNLKFGLVEVVYEWAKGTPFADICELTDVPEGMIVRTIVRLDETCREF
        V++ K   E  P +TP+L+  K+R+ E   ++  +    Q  L  D  E+  D  +F ++ VVYEWA+G  F +I E++   EG +VR I  LDE CRE 
Subjt:  VFQQKNTSE--PSLTPKLSMAKKRLYETAIRLGQL--QAQFRLQVDPEEYARDNLKFGLVEVVYEWAKGTPFADICELTDVPEGMIVRTIVRLDETCREF

Query:  KNAAAIMGNSALHKKMETASNAIKRDIVFAASLYI
        K A+ I+GNS LH KM  A   IKRDIVFAASLY+
Subjt:  KNAAAIMGNSALHKKMETASNAIKRDIVFAASLYI

Q15477 Helicase SKI2W2.1e-4339.48Show/hide
Query:  LTVMQDLKLKDVNLVEAYKVWTDLLLKKVANKCHG--CIKL----VEHLKLAAEIKKHKEEVNNLKFQMSDEALQQMPDFQGRIDVLKDIGCINADLVVQ
        L  + DL+LKD+++VE       L  +K+     G  C+       ++LKL   ++  K E+  L+F +SD++L  +P++  R++VL+ +G ++    V+
Subjt:  LTVMQDLKLKDVNLVEAYKVWTDLLLKKVANKCHG--CIKL----VEHLKLAAEIKKHKEEVNNLKFQMSDEALQQMPDFQGRIDVLKDIGCINADLVVQ

Query:  IKGRVACEMNSGEELICTECLFENQLDDLEPEEAVALMSAFVFQQKNTSEPSLTPKLSMAKKRLYETAIRLGQLQAQFRLQVDPEEYARDNLKFGLVEVV
        + GRVAC M+S  EL+ TE +F+N L  L PEE  AL+S  V Q    +   L   L    +R+   A R+G++Q    L    EE+  + L FGLVEVV
Subjt:  IKGRVACEMNSGEELICTECLFENQLDDLEPEEAVALMSAFVFQQKNTSEPSLTPKLSMAKKRLYETAIRLGQLQAQFRLQVDPEEYARDNLKFGLVEVV

Query:  YEWAKGTPFADICELTDVPEGMIVRTIVRLDETCREFKNAAAIMGNSALHKKMETASNAIKRDIVFAASLY
        YEWA+G PF+++  L+  PEG++VR I RL E CR  + AA ++G   L  KMETA+  ++RDIVFAASLY
Subjt:  YEWAKGTPFADICELTDVPEGMIVRTIVRLDETCREFKNAAAIMGNSALHKKMETASNAIKRDIVFAASLY

Arabidopsis top hitse value%identityAlignment
AT1G59760.1 RNA helicase, ATP-dependent, SK12/DOB1 protein5.9e-3336.32Show/hide
Query:  KLAAEIKKHKEEVNNLKFQMSDEALQQMPDFQGRIDVLKDIGCINADLVVQIKGRVACEMNSGEELICTECLFENQLDDLEPEEAVALMSAFVFQQKNTS
        +L A+IK  K+ V       S  AL    + + R  VL+ +G I +D VV++KG+VACE++S EEL  TE +F     D + EE V+L+S FV++++   
Subjt:  KLAAEIKKHKEEVNNLKFQMSDEALQQMPDFQGRIDVLKDIGCINADLVVQIKGRVACEMNSGEELICTECLFENQLDDLEPEEAVALMSAFVFQQKNTS

Query:  EPSLTPKLSMAKKRLYETAIRLGQLQAQFRLQVDPEEYARDNLKFGLVEVVYEWAKGTPFADICELTDVPEGMIVRTIVRLDETCREFKNAAAIMGNSAL
              +L +   +L +TA R+ ++Q   ++++D E + + + +  ++E VY WAKG+ F ++ E+  V EG ++R I R++E  ++   AA  +G + L
Subjt:  EPSLTPKLSMAKKRLYETAIRLGQLQAQFRLQVDPEEYARDNLKFGLVEVVYEWAKGTPFADICELTDVPEGMIVRTIVRLDETCREFKNAAAIMGNSAL

Query:  HKKMETASNAIKRDIVFAASLYI
          K+E A + IKRDIVFAASLY+
Subjt:  HKKMETASNAIKRDIVFAASLYI

AT2G06990.1 RNA helicase, ATP-dependent, SK12/DOB1 protein8.5e-4033.46Show/hide
Query:  MQDLKLKDVNLVEAYKVWTDLLLKKVANKCHGC--IKLVEHLKLAAEIKKHKEEVNNLKFQMSDEALQQMPD-FQGRIDVLKDIGCINADLVVQIKGRVA
        ++D+ ++D  +V+      ++  K +A+  H     + ++  +  AE+     E+  LK +M D  LQ+  D  + R  VLK +G I+AD VVQ+KGR A
Subjt:  MQDLKLKDVNLVEAYKVWTDLLLKKVANKCHGC--IKLVEHLKLAAEIKKHKEEVNNLKFQMSDEALQQMPD-FQGRIDVLKDIGCINADLVVQIKGRVA

Query:  CEMNSGEELICTECLFENQLDDLEPEEAVALMSAFVFQQKNTSEPSLTPKLSMAKKRLYETAIRLGQLQAQFRLQVDPEEYARDNLKFGLVEVVYEWAKG
        C +++G+EL+ TE +F    +DL+  +  AL S F+   K+  + +L  +L+   ++L ++A ++ ++Q + +L++D EEY    ++  L++V+Y W+KG
Subjt:  CEMNSGEELICTECLFENQLDDLEPEEAVALMSAFVFQQKNTSEPSLTPKLSMAKKRLYETAIRLGQLQAQFRLQVDPEEYARDNLKFGLVEVVYEWAKG

Query:  TPFADICELTDVPEGMIVRTIVRLDETCREFKNAAAIMGNSALHKKMETASNAIKRDIVFAASLYI
          FA+I ++TD+ EG I+R+  RLDE   + + AA  +G S+L  K   AS +++R I+FA SLY+
Subjt:  TPFADICELTDVPEGMIVRTIVRLDETCREFKNAAAIMGNSALHKKMETASNAIKRDIVFAASLYI

AT3G46960.1 RNA helicase, ATP-dependent, SK12/DOB1 protein5.6e-12480.67Show/hide
Query:  LTVMQDLKLKDVNLVEAYKVWTDLLLKKVANKCHGCIKLVEHLKLAAEIKKHKEEVNNLKFQMSDEALQQMPDFQGRIDVLKDIGCINADLVVQIKGRVA
        L  ++DLKLKD  LVE Y  WT+LL K   NKCHGC+KL EH+KLA EIKKHK ++ +L+FQMSDEAL QMP FQGRIDVLK+IGCI+ DLVVQIKGRVA
Subjt:  LTVMQDLKLKDVNLVEAYKVWTDLLLKKVANKCHGCIKLVEHLKLAAEIKKHKEEVNNLKFQMSDEALQQMPDFQGRIDVLKDIGCINADLVVQIKGRVA

Query:  CEMNSGEELICTECLFENQLDDLEPEEAVALMSAFVFQQKNTSEPSLTPKLSMAKKRLYETAIRLGQLQAQFRLQVDPEEYARDNLKFGLVEVVYEWAKG
        CEMNSGEELICT CLFENQ ++LEPEEAVA+MSAFVFQQKNTS P+LTPKL+ AK+RLY+TAIRLG+LQAQ+ LQ+DPEEYA++NLKFGLVEVVYEWAKG
Subjt:  CEMNSGEELICTECLFENQLDDLEPEEAVALMSAFVFQQKNTSEPSLTPKLSMAKKRLYETAIRLGQLQAQFRLQVDPEEYARDNLKFGLVEVVYEWAKG

Query:  TPFADICELTDVPEGMIVRTIVRLDETCREFKNAAAIMGNSALHKKMETASNAIKRDIVFAASLYITGL
        TPFA+ICELTDVPEG+IVRTIVRLDETCREFKNAAAIMGNSALHKKM+ ASNAIKRDIVFAASLY+TG+
Subjt:  TPFADICELTDVPEGMIVRTIVRLDETCREFKNAAAIMGNSALHKKMETASNAIKRDIVFAASLYITGL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACATGTCCGCTTTACCATGATAGAGGATGTGATGTTGGGGGTTCCACAAGTTTGCACACGAGCATTGGCTTGACAGTTATGCAAGACTTGAAGTTGAAAGATGTGAA
TCTTGTGGAGGCGTACAAGGTTTGGACTGACTTATTGCTAAAGAAGGTTGCTAACAAGTGCCATGGGTGTATAAAATTGGTGGAGCACCTGAAATTAGCGGCAGAGATAA
AGAAACACAAAGAGGAAGTCAATAACCTTAAGTTTCAAATGTCAGACGAAGCACTTCAACAAATGCCAGACTTTCAGGGCCGGATTGACGTTTTAAAGGACATTGGCTGT
ATAAACGCTGACCTGGTGGTTCAAATTAAAGGTCGGGTTGCCTGCGAGATGAACTCTGGGGAGGAGTTGATCTGTACAGAGTGTTTATTTGAGAATCAATTGGACGACCT
TGAACCAGAAGAAGCAGTGGCATTAATGTCTGCTTTTGTGTTCCAGCAGAAAAATACCTCCGAACCTTCCCTTACCCCAAAGCTGTCTATGGCTAAAAAAAGATTGTACG
AGACAGCAATAAGACTTGGTCAGCTTCAAGCTCAGTTCAGACTTCAAGTCGACCCCGAGGAGTACGCCCGAGACAATCTTAAGTTCGGTCTTGTTGAAGTAGTCTACGAA
TGGGCAAAAGGAACACCATTTGCCGACATTTGTGAGCTCACAGATGTTCCTGAAGGTATGATAGTTAGAACTATAGTCAGATTGGACGAAACGTGTCGAGAATTCAAGAA
TGCAGCGGCTATTATGGGGAACTCTGCACTCCACAAGAAGATGGAAACGGCCTCAAATGCTATAAAGCGCGATATCGTCTTCGCTGCTAGTTTGTACATCACTGGACTCT
GA
mRNA sequenceShow/hide mRNA sequence
ATGACATGTCCGCTTTACCATGATAGAGGATGTGATGTTGGGGGTTCCACAAGTTTGCACACGAGCATTGGCTTGACAGTTATGCAAGACTTGAAGTTGAAAGATGTGAA
TCTTGTGGAGGCGTACAAGGTTTGGACTGACTTATTGCTAAAGAAGGTTGCTAACAAGTGCCATGGGTGTATAAAATTGGTGGAGCACCTGAAATTAGCGGCAGAGATAA
AGAAACACAAAGAGGAAGTCAATAACCTTAAGTTTCAAATGTCAGACGAAGCACTTCAACAAATGCCAGACTTTCAGGGCCGGATTGACGTTTTAAAGGACATTGGCTGT
ATAAACGCTGACCTGGTGGTTCAAATTAAAGGTCGGGTTGCCTGCGAGATGAACTCTGGGGAGGAGTTGATCTGTACAGAGTGTTTATTTGAGAATCAATTGGACGACCT
TGAACCAGAAGAAGCAGTGGCATTAATGTCTGCTTTTGTGTTCCAGCAGAAAAATACCTCCGAACCTTCCCTTACCCCAAAGCTGTCTATGGCTAAAAAAAGATTGTACG
AGACAGCAATAAGACTTGGTCAGCTTCAAGCTCAGTTCAGACTTCAAGTCGACCCCGAGGAGTACGCCCGAGACAATCTTAAGTTCGGTCTTGTTGAAGTAGTCTACGAA
TGGGCAAAAGGAACACCATTTGCCGACATTTGTGAGCTCACAGATGTTCCTGAAGGTATGATAGTTAGAACTATAGTCAGATTGGACGAAACGTGTCGAGAATTCAAGAA
TGCAGCGGCTATTATGGGGAACTCTGCACTCCACAAGAAGATGGAAACGGCCTCAAATGCTATAAAGCGCGATATCGTCTTCGCTGCTAGTTTGTACATCACTGGACTCT
GA
Protein sequenceShow/hide protein sequence
MTCPLYHDRGCDVGGSTSLHTSIGLTVMQDLKLKDVNLVEAYKVWTDLLLKKVANKCHGCIKLVEHLKLAAEIKKHKEEVNNLKFQMSDEALQQMPDFQGRIDVLKDIGC
INADLVVQIKGRVACEMNSGEELICTECLFENQLDDLEPEEAVALMSAFVFQQKNTSEPSLTPKLSMAKKRLYETAIRLGQLQAQFRLQVDPEEYARDNLKFGLVEVVYE
WAKGTPFADICELTDVPEGMIVRTIVRLDETCREFKNAAAIMGNSALHKKMETASNAIKRDIVFAASLYITGL