; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg005810 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg005810
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold11:1121387..1122227
RNA-Seq ExpressionSpg005810
SyntenySpg005810
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_015385025.1 uncharacterized protein LOC107176703 [Citrus sinensis]2.7e-1023.46Show/hide
Query:  CGRSKKVCDSMFARVDAQIPIRNNFLDRIIWLAKHLGREEFERACITFWSLWNDRNNF---NNNVPLMDFSKRCEWICDYWEKTRNAQMVTKSTRVRDKE
        C  ++KV    +   + Q  +R + L  +  L K +   E E   + +W +W+ RN        V  M    + +   + +++    +  +K    R ++
Subjt:  CGRSKKVCDSMFARVDAQIPIRNNFLDRIIWLAKHLGREEFERACITFWSLWNDRNNF---NNNVPLMDFSKRCEWICDYWEKTRNAQMVTKSTRVRDKE

Query:  ISVMERQEEYAGINGDVVYLYTDAAVRTCVIGVGFGVVITRPQGGLVAA---------------MELMKPSALSPLAAEISKAVVYSDSNNAIMMIRDET
        +S   +Q+++         +  DAAV T     G GVVI  PQG ++ A                E +K      L A ++  ++ +D      +   +T
Subjt:  ISVMERQEEYAGINGDVVYLYTDAAVRTCVIGVGFGVVITRPQGGLVAA---------------MELMKPSALSPLAAEISKAVVYSDSNNAIMMIRDET

Query:  QITTDVYHWILRIRTMSAAFEALTFYHVPREDNKRADFLAKRALDRRNCMLWLGNFPPEI
            ++   I  I +    F++L+  HVPR  N  A  LAKRAL     + W  NFPP++
Subjt:  QITTDVYHWILRIRTMSAAFEALTFYHVPREDNKRADFLAKRALDRRNCMLWLGNFPPEI

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]8.6e-1728.52Show/hide
Query:  CGRSKKVCDSMFARVDAQIPIRN-NFLDRIIWLAKHLGREEFERACITFWSLWNDRNNFNNNVPLMDFSKRCEWICDYWEKTRNAQMVTKSTRVRDKEIS
        C R++++  ++F  +       N +FL+    L + L  ++   A IT W +WNDRN+  +   +     +CEW+  + +    AQM   S R +     
Subjt:  CGRSKKVCDSMFARVDAQIPIRN-NFLDRIIWLAKHLGREEFERACITFWSLWNDRNNFNNNVPLMDFSKRCEWICDYWEKTRNAQMVTKSTRVRDKEIS

Query:  VMERQEEYAGINGDVVYLYTDAAVRTCVIGVGFGVVITRPQGGLVAAMELMKPSALSPLAAEI---------------SKAVVYSDSNNAIMMIRDETQI
        V++     + ++   + L TDAA R       FG +I      LVAA  +  P  LSPL AEI               +   V SDS  AI +IR+E   
Subjt:  VMERQEEYAGINGDVVYLYTDAAVRTCVIGVGFGVVITRPQGGLVAAMELMKPSALSPLAAEI---------------SKAVVYSDSNNAIMMIRDETQI

Query:  TTDVYHWILRIRTMSAAFEALTFYHVPREDNKRADFLAKRALDRRNC-MLWLGNFP
          D  +W++ I+ ++  F  ++F H  R+ N+ A  LAK  +   +    WL NFP
Subjt:  TTDVYHWILRIRTMSAAFEALTFYHVPREDNKRADFLAKRALDRRNC-MLWLGNFP

XP_024033146.1 uncharacterized protein LOC112095446 [Citrus clementina]3.5e-1023.46Show/hide
Query:  CGRSKKVCDSMFARVDAQIPIRNNFLDRIIWLAKHLGREEFERACITFWSLWNDRNNF---NNNVPLMDFSKRCEWICDYWEKTRNAQMVTKSTRVRDKE
        C  ++KV    +   + Q  +R + L  +  L K +   E E   + +W +W+ RN        V  M    + +   + +++    +  +K    R ++
Subjt:  CGRSKKVCDSMFARVDAQIPIRNNFLDRIIWLAKHLGREEFERACITFWSLWNDRNNF---NNNVPLMDFSKRCEWICDYWEKTRNAQMVTKSTRVRDKE

Query:  ISVMERQEEYAGINGDVVYLYTDAAVRTCVIGVGFGVVITRPQGGLVAA---------------MELMKPSALSPLAAEISKAVVYSDSNNAIMMIRDET
        +S   +Q+++         +  DAAV T     G GVVI  PQG ++ A                E +K      L A ++  ++ +D      +   +T
Subjt:  ISVMERQEEYAGINGDVVYLYTDAAVRTCVIGVGFGVVITRPQGGLVAA---------------MELMKPSALSPLAAEISKAVVYSDSNNAIMMIRDET

Query:  QITTDVYHWILRIRTMSAAFEALTFYHVPREDNKRADFLAKRALDRRNCMLWLGNFPPEI
            ++   I  I +    F++L+  HVPR  N  A  LAKRAL     + W  NFPP++
Subjt:  QITTDVYHWILRIRTMSAAFEALTFYHVPREDNKRADFLAKRALDRRNCMLWLGNFPPEI

XP_024046732.1 uncharacterized protein LOC112101057 [Citrus clementina]2.7e-1023.46Show/hide
Query:  CGRSKKVCDSMFARVDAQIPIRNNFLDRIIWLAKHLGREEFERACITFWSLWNDRNNF---NNNVPLMDFSKRCEWICDYWEKTRNAQMVTKSTRVRDKE
        C  ++KV    +   + Q  +R   L  +  L K +   E E   + +W +W+ RN        V  M    + +   + +++    +  +K    R ++
Subjt:  CGRSKKVCDSMFARVDAQIPIRNNFLDRIIWLAKHLGREEFERACITFWSLWNDRNNF---NNNVPLMDFSKRCEWICDYWEKTRNAQMVTKSTRVRDKE

Query:  ISVMERQEEYAGINGDVVYLYTDAAVRTCVIGVGFGVVITRPQGGLV---------------AAMELMKPSALSPLAAEISKAVVYSDSNNAIMMIRDET
        +S   +Q+++         +  DAAV T     G GVVI  PQG ++               A  E +K      L A ++  ++ +D      +   +T
Subjt:  ISVMERQEEYAGINGDVVYLYTDAAVRTCVIGVGFGVVITRPQGGLV---------------AAMELMKPSALSPLAAEISKAVVYSDSNNAIMMIRDET

Query:  QITTDVYHWILRIRTMSAAFEALTFYHVPREDNKRADFLAKRALDRRNCMLWLGNFPPEI
            ++   I  I +    F++L+  HVPR  N  A  LAKRAL     + W  NFPP++
Subjt:  QITTDVYHWILRIRTMSAAFEALTFYHVPREDNKRADFLAKRALDRRNCMLWLGNFPPEI

XP_024950112.1 uncharacterized protein LOC112496847 [Citrus sinensis]3.5e-1026.96Show/hide
Query:  LAKHLGREEFERACITFWSLWNDRNN--FNNNV--PLMDFSKRCEWICDYWEKTRNAQMVTKSTRVRDKEISVMERQEEYAGINGDVVYLYTDAAVRTCV
        +AK L + + E      WS W  RN   F+     P++  +K  E +   +++ R  Q    S       IS+ E+Q+E+     +V  +  DAA  +  
Subjt:  LAKHLGREEFERACITFWSLWNDRNN--FNNNV--PLMDFSKRCEWICDYWEKTRNAQMVTKSTRVRDKEISVMERQEEYAGINGDVVYLYTDAAVRTCV

Query:  IGVGFGVVITRPQGGLVAA---MELMKPSALSPLA------------AEISKAVVYSDSNNAIMMIRDETQITTDVYHWILRIRTMSAAFEALTFYHVPR
        +  G G VI    G +VAA     L+K SA    A            A++S  ++ SD    + ++ +     ++++  IL I+     F+ +   H+PR
Subjt:  IGVGFGVVITRPQGGLVAA---MELMKPSALSPLA------------AEISKAVVYSDSNNAIMMIRDETQITTDVYHWILRIRTMSAAFEALTFYHVPR

Query:  EDNKRADFLAKRALDRRNCMLWLGNFPPEI
          N  A +LAK AL + +  +WLGN P E+
Subjt:  EDNKRADFLAKRALDRRNCMLWLGNFPPEI

TrEMBL top hitse value%identityAlignment
A0A6J1DX30 uncharacterized protein LOC1110248744.1e-1728.52Show/hide
Query:  CGRSKKVCDSMFARVDAQIPIRN-NFLDRIIWLAKHLGREEFERACITFWSLWNDRNNFNNNVPLMDFSKRCEWICDYWEKTRNAQMVTKSTRVRDKEIS
        C R++++  ++F  +       N +FL+    L + L  ++   A IT W +WNDRN+  +   +     +CEW+  + +    AQM   S R +     
Subjt:  CGRSKKVCDSMFARVDAQIPIRN-NFLDRIIWLAKHLGREEFERACITFWSLWNDRNNFNNNVPLMDFSKRCEWICDYWEKTRNAQMVTKSTRVRDKEIS

Query:  VMERQEEYAGINGDVVYLYTDAAVRTCVIGVGFGVVITRPQGGLVAAMELMKPSALSPLAAEI---------------SKAVVYSDSNNAIMMIRDETQI
        V++     + ++   + L TDAA R       FG +I      LVAA  +  P  LSPL AEI               +   V SDS  AI +IR+E   
Subjt:  VMERQEEYAGINGDVVYLYTDAAVRTCVIGVGFGVVITRPQGGLVAAMELMKPSALSPLAAEI---------------SKAVVYSDSNNAIMMIRDETQI

Query:  TTDVYHWILRIRTMSAAFEALTFYHVPREDNKRADFLAKRALDRRNC-MLWLGNFP
          D  +W++ I+ ++  F  ++F H  R+ N+ A  LAK  +   +    WL NFP
Subjt:  TTDVYHWILRIRTMSAAFEALTFYHVPREDNKRADFLAKRALDRRNC-MLWLGNFP

A0A7J6E4T6 Uncharacterized protein1.2e-0825Show/hide
Query:  DRIIWLAKHLGREEFERACITFWSLWNDRNNFNNNVPLMDFSKRCEWICDYWEKTRNAQMVTKSTRVRDKEISVMERQEEYAGINGDVVYLYTDAAVRTC
        D+I  + K L   EFE      W++W +RN   N++P M+  +   W+   + K       T  T    KE  V   Q+ +       + + +DAAV   
Subjt:  DRIIWLAKHLGREEFERACITFWSLWNDRNNFNNNVPLMDFSKRCEWICDYWEKTRNAQMVTKSTRVRDKEISVMERQEEYAGINGDVVYLYTDAAVRTC

Query:  VIGVGFGVVITRPQGGLVAAMELMKPSALS---------------PLAAEISKAVVYSDSNNAIMMIRDETQITTDVYHWILRIRTMSAAFEALTFYHVP
        V GVG G +  +  G L++A  +   S  S               P AAE ++  +       +  I+D+ +  T   + I +I  +   F ++   HV 
Subjt:  VIGVGFGVVITRPQGGLVAAMELMKPSALS---------------PLAAEISKAVVYSDSNNAIMMIRDETQITTDVYHWILRIRTMSAAFEALTFYHVP

Query:  REDNKRADFLAKRALDRRNCMLWLGNFP
        R +N+ A+ LA++ LD +    +  +FP
Subjt:  REDNKRADFLAKRALDRRNCMLWLGNFP

A0A7J6G5T3 Uncharacterized protein9.3e-0923.04Show/hide
Query:  REEFERACITFWSLWNDRNNFNNNVPLMDFSKRCEWICDYWEKTRNAQMVTKSTRVRDKEISVMERQEEYAGINGDVVYLYTDAAVRTCVIGVGFGVVIT
        R+EFE      W++W +RN   N +P M+  +   W+ + + K     +         K++ V    + +   +   + + +DAA+     GVG G V  
Subjt:  REEFERACITFWSLWNDRNNFNNNVPLMDFSKRCEWICDYWEKTRNAQMVTKSTRVRDKEISVMERQEEYAGINGDVVYLYTDAAVRTCVIGVGFGVVIT

Query:  RPQGGLVAAMELMKPSALS---------------PLAAEISKAVVYSDSNNAIMMIRDETQITTDVYHWILRIRTMSAAFEALTFYHVPREDNKRADFLA
           G L++A  +  PS  S               P A + S+  V +D    +  I+ +  I T   + I ++  +   F ++  +HV R +NK A+ LA
Subjt:  RPQGGLVAAMELMKPSALS---------------PLAAEISKAVVYSDSNNAIMMIRDETQITTDVYHWILRIRTMSAAFEALTFYHVPREDNKRADFLA

Query:  KRALDRRNCMLWLGNFP
        ++ L  +    +   FP
Subjt:  KRALDRRNCMLWLGNFP

A0A7J6HMG9 RNase H domain-containing protein9.3e-0922.81Show/hide
Query:  DRIIWLAKHLGREEFERACITFWSLWNDRNNFNNNVPLMDFSKRCEWICDYWEKTRNAQMVTKSTRVRDKEISVMERQEEYAGINGDVVYLYTDAAVRTC
        D ++ + + + R EFE      W++W +RN   N +P M+  +   W+ + + K     + T    V  K+       + +       + + +DAAV+  
Subjt:  DRIIWLAKHLGREEFERACITFWSLWNDRNNFNNNVPLMDFSKRCEWICDYWEKTRNAQMVTKSTRVRDKEISVMERQEEYAGINGDVVYLYTDAAVRTC

Query:  VIGVGFGVVITRPQGGLVAAMELMKPSALS---------------PLAAEISKAVVYSDSNNAIMMIRDETQITTDVYHWILRIRTMSAAFEALTFYHVP
         +GVG G +  +  G L++A  +  PS  S               P AA+ S+  V +D    +  I+ +    T   + I +I  +   F ++   HV 
Subjt:  VIGVGFGVVITRPQGGLVAAMELMKPSALS---------------PLAAEISKAVVYSDSNNAIMMIRDETQITTDVYHWILRIRTMSAAFEALTFYHVP

Query:  REDNKRADFLAKRALDRRNCMLWLGNFP
        R +N+ A+ LA++ L  +    +  +FP
Subjt:  REDNKRADFLAKRALDRRNCMLWLGNFP

A0A803NGI9 Uncharacterized protein2.7e-0823.11Show/hide
Query:  CGRSKKVCDSMFARVDAQIPIRNNFLDRIIWLAKHLGREEFERACITFWSLWNDRNNFNNNVPLMD----FSKRCEWICDYWEKTRNAQMVTKSTRVRDK
        C  +KKV       ++  +  R +F D ++ L+      E E+   T W LWNDRNNF +  P +     ++K   + C++ +++ +++ +  ST     
Subjt:  CGRSKKVCDSMFARVDAQIPIRNNFLDRIIWLAKHLGREEFERACITFWSLWNDRNNFNNNVPLMD----FSKRCEWICDYWEKTRNAQMVTKSTRVRDK

Query:  EISVMERQEEYAGINGDVVYLYTDAAVRTCVIGVGFGVVITRPQGGLVAAMELMKPSALSPLAAE---------------ISKAVVYSDSNNAIMMIRDE
               Q  +     D + +  DAA       +G G++I    G +VAA        L P   E               +S  +  SDS   +  I   
Subjt:  EISVMERQEEYAGINGDVVYLYTDAAVRTCVIGVGFGVVITRPQGGLVAAMELMKPSALSPLAAE---------------ISKAVVYSDSNNAIMMIRDE

Query:  TQITTDVYHWILRIRTMSAAFEALTFYHVPREDNKRADFLAKRALDRRNCMLWLGNFPPEIDSM
        +   +     +L I+   +   ++   HV R+ N+ A  LAK AL+  +  +W    P  I S+
Subjt:  TQITTDVYHWILRIRTMSAAFEALTFYHVPREDNKRADFLAKRALDRRNCMLWLGNFPPEIDSM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTGGGTGTGGAAGGTCCAAAAAGGTATGTGATAGTATGTTTGCACGGGTGGATGCTCAAATTCCGATACGGAATAATTTTCTTGATCGAATTATTTGGCTTGCAAA
GCATCTTGGAAGAGAGGAATTTGAGCGAGCTTGCATCACATTTTGGTCTCTGTGGAATGATAGAAATAATTTCAACAACAATGTACCTCTTATGGATTTTTCAAAACGTT
GTGAATGGATTTGTGACTATTGGGAAAAGACAAGAAATGCGCAGATGGTAACTAAATCCACAAGGGTGAGGGACAAAGAGATTTCGGTGATGGAAAGGCAGGAGGAGTAC
GCAGGCATAAACGGTGATGTCGTCTACTTGTACACAGATGCTGCTGTTCGGACTTGTGTAATAGGAGTAGGATTTGGAGTTGTTATAACGAGACCGCAAGGTGGTTTAGT
TGCCGCAATGGAATTGATGAAACCATCAGCGTTGTCTCCTTTAGCGGCAGAGATATCGAAGGCAGTTGTGTATTCGGACTCCAATAATGCGATTATGATGATTCGCGACG
AAACCCAAATTACGACTGATGTATATCATTGGATTCTTCGAATTCGAACGATGTCTGCAGCATTTGAAGCCTTAACTTTTTACCATGTGCCTCGAGAAGATAACAAGAGG
GCGGACTTTCTAGCAAAACGTGCTTTAGATCGACGGAACTGCATGCTTTGGTTAGGAAATTTTCCACCTGAGATAGATTCAATGAGTGATTTCTCTCTATGCAATTGTAA
TGTTCTATGTTCTTGTTCAACTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTGTGGGTGTGGAAGGTCCAAAAAGGTATGTGATAGTATGTTTGCACGGGTGGATGCTCAAATTCCGATACGGAATAATTTTCTTGATCGAATTATTTGGCTTGCAAA
GCATCTTGGAAGAGAGGAATTTGAGCGAGCTTGCATCACATTTTGGTCTCTGTGGAATGATAGAAATAATTTCAACAACAATGTACCTCTTATGGATTTTTCAAAACGTT
GTGAATGGATTTGTGACTATTGGGAAAAGACAAGAAATGCGCAGATGGTAACTAAATCCACAAGGGTGAGGGACAAAGAGATTTCGGTGATGGAAAGGCAGGAGGAGTAC
GCAGGCATAAACGGTGATGTCGTCTACTTGTACACAGATGCTGCTGTTCGGACTTGTGTAATAGGAGTAGGATTTGGAGTTGTTATAACGAGACCGCAAGGTGGTTTAGT
TGCCGCAATGGAATTGATGAAACCATCAGCGTTGTCTCCTTTAGCGGCAGAGATATCGAAGGCAGTTGTGTATTCGGACTCCAATAATGCGATTATGATGATTCGCGACG
AAACCCAAATTACGACTGATGTATATCATTGGATTCTTCGAATTCGAACGATGTCTGCAGCATTTGAAGCCTTAACTTTTTACCATGTGCCTCGAGAAGATAACAAGAGG
GCGGACTTTCTAGCAAAACGTGCTTTAGATCGACGGAACTGCATGCTTTGGTTAGGAAATTTTCCACCTGAGATAGATTCAATGAGTGATTTCTCTCTATGCAATTGTAA
TGTTCTATGTTCTTGTTCAACTTAA
Protein sequenceShow/hide protein sequence
MCGCGRSKKVCDSMFARVDAQIPIRNNFLDRIIWLAKHLGREEFERACITFWSLWNDRNNFNNNVPLMDFSKRCEWICDYWEKTRNAQMVTKSTRVRDKEISVMERQEEY
AGINGDVVYLYTDAAVRTCVIGVGFGVVITRPQGGLVAAMELMKPSALSPLAAEISKAVVYSDSNNAIMMIRDETQITTDVYHWILRIRTMSAAFEALTFYHVPREDNKR
ADFLAKRALDRRNCMLWLGNFPPEIDSMSDFSLCNCNVLCSCST