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Spg005849 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg005849
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold11:476331..479088
RNA-Seq ExpressionSpg005849
SyntenySpg005849
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]1.2e-1760.44Show/hide
Query:  VYKSNQKLYLVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI---VNVLFNVQEGQRVSL------EEDDVRWLHAIFRAKLAGGPGG
        V+KSNQKLYLVEIELPVPDTL TSAESSR++SSTW+ELY ESVH+     V+   +  Q   L        +DV WLHA+F AK AGGP G
Subjt:  VYKSNQKLYLVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI---VNVLFNVQEGQRVSL------EEDDVRWLHAIFRAKLAGGPGG

KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.2e-1751.75Show/hide
Query:  VYKSNQKLYL-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHA
        V+KSNQKLYL                 VEIELPVPDTLPTSAES  ++SSTW+ELY ESVH+             ++++ NV  G    +  DDV WLHA
Subjt:  VYKSNQKLYL-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHA

Query:  IFRAKLAGGPGGGV
        +FRAK AGGPGGGV
Subjt:  IFRAKLAGGPGGGV

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]4.7e-1756.82Show/hide
Query:  LVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGV
        +VEIELPVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++F+V  G    +  DDV WLHA+FRAK  GGPGGGV
Subjt:  LVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGV

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]1.2e-1760.44Show/hide
Query:  VYKSNQKLYLVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI---VNVLFNVQEGQRVSL------EEDDVRWLHAIFRAKLAGGPGG
        V+KSNQKLYLVEIELPVPDTL TSAESSR++SSTW+ELY ESVH+     V+   +  Q   L        +DV WLHA+F AK AGGP G
Subjt:  VYKSNQKLYLVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI---VNVLFNVQEGQRVSL------EEDDVRWLHAIFRAKLAGGPGG

TYK17971.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.2e-1751.75Show/hide
Query:  VYKSNQKLYL-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHA
        V+KSNQKLYL                 VEIELPVPDTLPTSAES  ++SSTW+ELY ESVH+             ++++ NV  G    +  DDV WLHA
Subjt:  VYKSNQKLYL-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHA

Query:  IFRAKLAGGPGGGV
        +FRAK AGGPGGGV
Subjt:  IFRAKLAGGPGGGV

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase6.0e-1860.44Show/hide
Query:  VYKSNQKLYLVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI---VNVLFNVQEGQRVSL------EEDDVRWLHAIFRAKLAGGPGG
        V+KSNQKLYLVEIELPVPDTL TSAESSR++SSTW+ELY ESVH+     V+   +  Q   L        +DV WLHA+F AK AGGP G
Subjt:  VYKSNQKLYLVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI---VNVLFNVQEGQRVSL------EEDDVRWLHAIFRAKLAGGPGG

A0A5A7TKT0 Reverse transcriptase6.0e-1851.75Show/hide
Query:  VYKSNQKLYL-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHA
        V+KSNQKLYL                 VEIELPVPDTLPTSAES  ++SSTW+ELY ESVH+             ++++ NV  G    +  DDV WLHA
Subjt:  VYKSNQKLYL-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHA

Query:  IFRAKLAGGPGGGV
        +FRAK AGGPGGGV
Subjt:  IFRAKLAGGPGGGV

A0A5A7V9N3 Reverse transcriptase2.3e-1756.82Show/hide
Query:  LVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGV
        +VEIELPVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++F+V  G    +  DDV WLHA+FRAK  GGPGGGV
Subjt:  LVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGV

A0A5D3BTP3 Reverse transcriptase6.0e-1860.44Show/hide
Query:  VYKSNQKLYLVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI---VNVLFNVQEGQRVSL------EEDDVRWLHAIFRAKLAGGPGG
        V+KSNQKLYLVEIELPVPDTL TSAESSR++SSTW+ELY ESVH+     V+   +  Q   L        +DV WLHA+F AK AGGP G
Subjt:  VYKSNQKLYLVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI---VNVLFNVQEGQRVSL------EEDDVRWLHAIFRAKLAGGPGG

A0A5D3D150 Reverse transcriptase6.0e-1851.75Show/hide
Query:  VYKSNQKLYL-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHA
        V+KSNQKLYL                 VEIELPVPDTLPTSAES  ++SSTW+ELY ESVH+             ++++ NV  G    +  DDV WLHA
Subjt:  VYKSNQKLYL-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHA

Query:  IFRAKLAGGPGGGV
        +FRAK AGGPGGGV
Subjt:  IFRAKLAGGPGGGV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAATGGACAGCAAGACACCCACCATCGCTTCACCCATTATCAGCCCCATTTCTCATCTTTTTCCATCCAAACTTTCAGAGCATTTTAAGGAGAGAGTGAGGAGGAA
GAAGAAGAATAATTTCGTGGTTTTGAGGTTGAAGAAGATAAGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGGTGCAAAACTGATTTTCGAGCAAACCAGGAGG
TTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTCGAATCAGAAGCTATATTTGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCC
AGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGT
CCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTATTCTGGACCACTCCGAAATTCAAGGAGCTAAGCAAAACAGCACAGCGCCAGC
CTGAAGATGTGACCAGGAAGTGGACCCTGGAGGAGAATCAGACGAAGGCCCAACCCAATAGCTTGGCCTCGACCAAGATCGAGGCCAATGCCTATGCTCGGCCCACTTGC
GTGGGCCGAATCCCTCCACTTCTGTTCGGTTGTTGGAGTCTTAAGTCGACCTGGTTCAGCCCCGATCAGTCTAGGGATGCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAATGGACAGCAAGACACCCACCATCGCTTCACCCATTATCAGCCCCATTTCTCATCTTTTTCCATCCAAACTTTCAGAGCATTTTAAGGAGAGAGTGAGGAGGAA
GAAGAAGAATAATTTCGTGGTTTTGAGGTTGAAGAAGATAAGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGGTGCAAAACTGATTTTCGAGCAAACCAGGAGG
TTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTCGAATCAGAAGCTATATTTGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCC
AGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGT
CCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTATTCTGGACCACTCCGAAATTCAAGGAGCTAAGCAAAACAGCACAGCGCCAGC
CTGAAGATGTGACCAGGAAGTGGACCCTGGAGGAGAATCAGACGAAGGCCCAACCCAATAGCTTGGCCTCGACCAAGATCGAGGCCAATGCCTATGCTCGGCCCACTTGC
GTGGGCCGAATCCCTCCACTTCTGTTCGGTTGTTGGAGTCTTAAGTCGACCTGGTTCAGCCCCGATCAGTCTAGGGATGCCTAG
Protein sequenceShow/hide protein sequence
MEMDSKTPTIASPIISPISHLFPSKLSEHFKERVRRKKKNNFVVLRLKKIRKAHAKPAIAESGCKTDFRANQEVLWCFEHSGVYKSNQKLYLVEIELPVPDTLPTSAESS
RTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVFWTTPKFKELSKTAQRQPEDVTRKWTLEENQTKAQPNSLASTKIEANAYARPTC
VGRIPPLLFGCWSLKSTWFSPDQSRDA