CuGenDBv2

Gene ID	Spg005883
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	zf-RVT domain-containing protein
Genome location	scaffold11:130634..133004
RNA-Seq Expression	Spg005883
Synteny	Spg005883
Gene Ontology terms	GO:0008152 - metabolic process (biological process) GO:0009987 - cellular process (biological process) GO:0050789 - regulation of biological process (biological process) GO:0110165 - cellular anatomical structure (cellular component)
InterPro domains	IPR026960 - Reverse transcriptase zinc-binding domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

CAN61757.1 hypothetical protein VITISV_030741 [Vitis vinifera]

1.5e-20

34.48

Show/hide

Query:  SRLIWKHKSPKKVKVFRWCLAYRSLNTDEKLQKKFSHWSLFPSACRMCVKAAENLDHLFLHCEFASKAWSFVANLLGISFCVPKKIDDWLYEGLIAWNFK
        ++ +W  + P KVK F W +A++ LNT++ LQ +  H +L P+ C++C+K  E +DHLFLHC      W  +  L  + +  P+ I D  +     +   
Subjt:  SRLIWKHKSPKKVKVFRWCLAYRSLNTDEKLQKKFSHWSLFPSACRMCVKAAENLDHLFLHCEFASKAWSFVANLLGISFCVPKKIDDWLYEGLIAWNFK

Query:  RKARIMARCVFRATIWLIWRERNARTFEDKVGN----LDSFCVCA
        ++  ++ +    A +W++WRERNAR FEDK  N     DS C  A
Subjt:  RKARIMARCVFRATIWLIWRERNARTFEDKVGN----LDSFCVCA

RVW20049.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]

1.5e-20

34.48

Show/hide

Query:  SRLIWKHKSPKKVKVFRWCLAYRSLNTDEKLQKKFSHWSLFPSACRMCVKAAENLDHLFLHCEFASKAWSFVANLLGISFCVPKKIDDWLYEGLIAWNFK
        ++ +W  + P KVK F W +A++ LNT++ LQ +  H +L P+ C++C+K  E +DHLFLHC      W  +  L  + +  P+ I D  +     +   
Subjt:  SRLIWKHKSPKKVKVFRWCLAYRSLNTDEKLQKKFSHWSLFPSACRMCVKAAENLDHLFLHCEFASKAWSFVANLLGISFCVPKKIDDWLYEGLIAWNFK

Query:  RKARIMARCVFRATIWLIWRERNARTFEDKVGN----LDSFCVCA
        ++  ++ +    A +W++WRERNAR FEDK  N     DS C  A
Subjt:  RKARIMARCVFRATIWLIWRERNARTFEDKVGN----LDSFCVCA

RVW52490.1 putative ribonuclease H protein [Vitis vinifera]

6.6e-21

35.17

Show/hide

Query:  SRLIWKHKSPKKVKVFRWCLAYRSLNTDEKLQKKFSHWSLFPSACRMCVKAAENLDHLFLHCEFASKAWSFVANLLGISFCVPKKIDDWLYEGLIAWNFK
        ++ +W  + P KVK F W +A++ LNT++ LQ +  H +L P+ C++C+K  E +DHLFLHC      W  +  L  + +  P+ I D  +     +   
Subjt:  SRLIWKHKSPKKVKVFRWCLAYRSLNTDEKLQKKFSHWSLFPSACRMCVKAAENLDHLFLHCEFASKAWSFVANLLGISFCVPKKIDDWLYEGLIAWNFK

Query:  RKARIMARCVFRATIWLIWRERNARTFEDKVGN----LDSFCVCA
        +K  ++ +    A +W++WRERNAR FEDK  N     DS C  A
Subjt:  RKARIMARCVFRATIWLIWRERNARTFEDKVGN----LDSFCVCA

RVW98432.1 Cation-chloride cotransporter 1 [Vitis vinifera]

3.3e-20

35.29

Show/hide

Query:  SRLIWKHKSPKKVKVFRWCLAYRSLNTDEKLQKKFSHWSLFPSACRMCVKAAENLDHLFLHCEFASKAWSFVANLLGISFCVPKKIDDWLYEGLIAWNFK
        S+ +WK + P KVK F W +A++ +NT++ LQ +  H +L P  C++C+   E+ DHLFLHC      W  +  L  + +  PK I D ++     +   
Subjt:  SRLIWKHKSPKKVKVFRWCLAYRSLNTDEKLQKKFSHWSLFPSACRMCVKAAENLDHLFLHCEFASKAWSFVANLLGISFCVPKKIDDWLYEGLIAWNFK

Query:  RKARIMARCVFRATIWLIWRERNARTFEDKVGNLDS
        ++  ++ +    A IW++WRERNAR FEDK  N ++
Subjt:  RKARIMARCVFRATIWLIWRERNARTFEDKVGNLDS

TYK31299.1 protein FAM91A1 [Cucumis melo var. makuwa]

1.1e-23

54.21

Show/hide

Query:  NKTTSRLIWKHKSPKKVKVFRWCLAYRSLNTDEKLQKKFSHWSLFPSACRMCVKAAENLDHLFLHCEFASKAWSFVANLLGISFCVPKKIDDWLYEGLIA
        N +T  LIWK K  KKVK F W LAYRSLN   KLQ+KF + SL PS C +C+K AE  DHLFLHC+FA K W+ + +L  +  C+PKKIDD + +GL  
Subjt:  NKTTSRLIWKHKSPKKVKVFRWCLAYRSLNTDEKLQKKFSHWSLFPSACRMCVKAAENLDHLFLHCEFASKAWSFVANLLGISFCVPKKIDDWLYEGLIA

Query:  WNFKRKA
         +F  KA
Subjt:  WNFKRKA

TrEMBL top hits

e value

%identity

Alignment

A0A438CA35 Transposon TX1 uncharacterized 149 kDa protein

7.1e-21

34.48

Show/hide

Query:  SRLIWKHKSPKKVKVFRWCLAYRSLNTDEKLQKKFSHWSLFPSACRMCVKAAENLDHLFLHCEFASKAWSFVANLLGISFCVPKKIDDWLYEGLIAWNFK
        ++ +W  + P KVK F W +A++ LNT++ LQ +  H +L P+ C++C+K  E +DHLFLHC      W  +  L  + +  P+ I D  +     +   
Subjt:  SRLIWKHKSPKKVKVFRWCLAYRSLNTDEKLQKKFSHWSLFPSACRMCVKAAENLDHLFLHCEFASKAWSFVANLLGISFCVPKKIDDWLYEGLIAWNFK

Query:  RKARIMARCVFRATIWLIWRERNARTFEDKVGN----LDSFCVCA
        ++  ++ +    A +W++WRERNAR FEDK  N     DS C  A
Subjt:  RKARIMARCVFRATIWLIWRERNARTFEDKVGN----LDSFCVCA

A0A438DVL1 Putative ribonuclease H protein

1.6e-20

35.29

Show/hide

Query:  SRLIWKHKSPKKVKVFRWCLAYRSLNTDEKLQKKFSHWSLFPSACRMCVKAAENLDHLFLHCEFASKAWSFVANLLGISFCVPKKIDDWLYEGLIAWNFK
        S+ +WK + P KVK F W +A++ +NT++ LQ +  H +L P  C++C+   E+ DHLFLHC      W  +  L  + +  PK I D ++     +   
Subjt:  SRLIWKHKSPKKVKVFRWCLAYRSLNTDEKLQKKFSHWSLFPSACRMCVKAAENLDHLFLHCEFASKAWSFVANLLGISFCVPKKIDDWLYEGLIAWNFK

Query:  RKARIMARCVFRATIWLIWRERNARTFEDKVGNLDS
        ++  ++ +    A IW++WRERNAR FEDK  N ++
Subjt:  RKARIMARCVFRATIWLIWRERNARTFEDKVGNLDS

A0A438EXL3 Putative ribonuclease H protein

3.2e-21

35.17

Show/hide

Query:  SRLIWKHKSPKKVKVFRWCLAYRSLNTDEKLQKKFSHWSLFPSACRMCVKAAENLDHLFLHCEFASKAWSFVANLLGISFCVPKKIDDWLYEGLIAWNFK
        ++ +W  + P KVK F W +A++ LNT++ LQ +  H +L P+ C++C+K  E +DHLFLHC      W  +  L  + +  P+ I D  +     +   
Subjt:  SRLIWKHKSPKKVKVFRWCLAYRSLNTDEKLQKKFSHWSLFPSACRMCVKAAENLDHLFLHCEFASKAWSFVANLLGISFCVPKKIDDWLYEGLIAWNFK

Query:  RKARIMARCVFRATIWLIWRERNARTFEDKVGN----LDSFCVCA
        +K  ++ +    A +W++WRERNAR FEDK  N     DS C  A
Subjt:  RKARIMARCVFRATIWLIWRERNARTFEDKVGN----LDSFCVCA

A0A5D3E632 Protein FAM91A1

5.3e-24

54.21

Show/hide

Query:  NKTTSRLIWKHKSPKKVKVFRWCLAYRSLNTDEKLQKKFSHWSLFPSACRMCVKAAENLDHLFLHCEFASKAWSFVANLLGISFCVPKKIDDWLYEGLIA
        N +T  LIWK K  KKVK F W LAYRSLN   KLQ+KF + SL PS C +C+K AE  DHLFLHC+FA K W+ + +L  +  C+PKKIDD + +GL  
Subjt:  NKTTSRLIWKHKSPKKVKVFRWCLAYRSLNTDEKLQKKFSHWSLFPSACRMCVKAAENLDHLFLHCEFASKAWSFVANLLGISFCVPKKIDDWLYEGLIA

Query:  WNFKRKA
         +F  KA
Subjt:  WNFKRKA

A5BTG1 zf-RVT domain-containing protein

7.1e-21

34.48

Show/hide

Query:  SRLIWKHKSPKKVKVFRWCLAYRSLNTDEKLQKKFSHWSLFPSACRMCVKAAENLDHLFLHCEFASKAWSFVANLLGISFCVPKKIDDWLYEGLIAWNFK
        ++ +W  + P KVK F W +A++ LNT++ LQ +  H +L P+ C++C+K  E +DHLFLHC      W  +  L  + +  P+ I D  +     +   
Subjt:  SRLIWKHKSPKKVKVFRWCLAYRSLNTDEKLQKKFSHWSLFPSACRMCVKAAENLDHLFLHCEFASKAWSFVANLLGISFCVPKKIDDWLYEGLIAWNFK

Query:  RKARIMARCVFRATIWLIWRERNARTFEDKVGN----LDSFCVCA
        ++  ++ +    A +W++WRERNAR FEDK  N     DS C  A
Subjt:  RKARIMARCVFRATIWLIWRERNARTFEDKVGN----LDSFCVCA

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G33710.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

4.9e-06

25.2

Show/hide

Query:  SRLIWKHKSPKKVKVFRWCLAYRSLNTDEKLQKKFSHWSL-FPSACRMCVKAAENLDHLFLHCEFASKAWSFVA---NLLGISFCVPKKIDDWLYEGLIA
        ++ +W   +  K     W      L T  +L    + W +   + C +C    E+ DHLFL CEFA   W  V+    L   SF V   + DW  +    
Subjt:  SRLIWKHKSPKKVKVFRWCLAYRSLNTDEKLQKKFSHWSL-FPSACRMCVKAAENLDHLFLHCEFASKAWSFVA---NLLGISFCVPKKIDDWLYEGLIA

Query:  WNFKRKARIMARCVFRATIWLIWRERN
           +R    + + + ++ ++ IW++RN
Subjt:  WNFKRKARIMARCVFRATIWLIWRERN

AT1G45063.1 copper ion binding;electron carriers

4.9e-06

27.72

Show/hide

Query:  KFSHWSL-FPSACRMCVKAAENLDHLFLHCEFASKAWSFVANLLGISFCVPKKIDD---WLYEGLIAWNFKRKARIMARCVFRATIWLIWRERNARTFED
        +F  W +  PS C +C    E   H+F  C F+ + WSF  +   ++   P+   D   WL          +K   + +  ++A+++ IWRERN R   +
Subjt:  KFSHWSL-FPSACRMCVKAAENLDHLFLHCEFASKAWSFVANLLGISFCVPKKIDD---WLYEGLIAWNFKRKARIMARCVFRATIWLIWRERNARTFED

Query:  K
        K
Subjt:  K

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAATAAAACCACTAGTAGGCTGATATGGAAGCATAAAAGCCCTAAGAAGGTGAAGGTGTTCCGATGGTGTCTTGCCTATAGAAGTCTTAATACTGATGAAAAGCTTCA
AAAGAAATTCAGCCATTGGTCCCTTTTCCCCTCAGCCTGCAGGATGTGTGTGAAAGCAGCAGAAAATTTAGACCACCTTTTTTTGCATTGCGAGTTCGCTAGTAAAGCTT
GGAGTTTTGTTGCTAATCTTCTGGGTATTTCGTTTTGTGTTCCTAAGAAGATCGATGATTGGCTTTATGAAGGCTTGATAGCTTGGAACTTCAAGAGGAAGGCTAGGATT
ATGGCTCGTTGTGTTTTTAGGGCTACCATTTGGCTCATATGGCGAGAAAGAAATGCTAGAACGTTCGAAGACAAAGTTGGGAACCTTGATTCTTTTTGTGTGTGTGCGGA
GCGTGAGGCGGAAATCACGTGTGATGAGCTTTATGTGCCCGGTGATGAAGATGAGGAGGTTCATGAGGGAAGACTACAGGGGTCCATTTATTCGTTTATATTGCTGTTGG
ATAGATTAAAAGGGTCAAGTGTGGAAGGTGATGATTTAAAGGTTAATGCTGATGTTTTGGAAGAAGTTGTCTCTAAGGCATCATCACATTGTGGTATTGAAAATTCAGAT
GATGAGTCTGAGGTTAGTATGAGCAGTGAAGAGATTGATTTTCCTCTGGAAAATCTTTTGAATGCTGATAGTTGTGATATTTTGGTAAATGATGATTTGAATTTGCTCTT
TAAATCTCCATTAAAATCTAATGCTTCAAGCAAGAAGATTGTGGATGACTTTAAGCCTTTAATTCCAATCGCTTCAGATAATTTAGATACTTTTTCTGCACTTATTAAAG
CCAATGGTCGTTCAAGCAGATTCTGCCATCCTCATTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MNKTTSRLIWKHKSPKKVKVFRWCLAYRSLNTDEKLQKKFSHWSLFPSACRMCVKAAENLDHLFLHCEFASKAWSFVANLLGISFCVPKKIDDWLYEGLIAWNFKRKARI
MARCVFRATIWLIWRERNARTFEDKVGNLDSFCVCAEREAEITCDELYVPGDEDEEVHEGRLQGSIYSFILLLDRLKGSSVEGDDLKVNADVLEEVVSKASSHCGIENSD
DESEVSMSSEEIDFPLENLLNADSCDILVNDDLNLLFKSPLKSNASSKKIVDDFKPLIPIASDNLDTFSALIKANGRSSRFCHPH

Spg005883 (gene) of Sponge gourd (cylindrica) v1 genome