CuGenDBv2

Gene ID	Spg005890
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	E3 ubiquitin-protein ligase listerin
Genome location	scaffold11:364617..366504
RNA-Seq Expression	Spg005890
Synteny	Spg005890
Gene Ontology terms	GO:0016567 - protein ubiquitination (biological process) GO:0072344 - rescue of stalled ribosome (biological process) GO:1990116 - ribosome-associated ubiquitin-dependent protein catabolic process (biological process) GO:0005829 - cytosol (cellular component) GO:1990112 - RQC complex (cellular component) GO:0008270 - zinc ion binding (molecular function) GO:0043023 - ribosomal large subunit binding (molecular function) GO:0061630 - ubiquitin protein ligase activity (molecular function)
InterPro domains	IPR039795 - E3 ubiquitin-protein ligase listerin

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0059991.1 E3 ubiquitin-protein ligase listerin isoform X1 [Cucumis melo var. makuwa]

1.5e-45

97.17

Show/hide

Query:  MGRPKGEGARSKARPSSSSLAASLLPSDSAANAAGFGGFLGSYRLDSSLTGDDAAPFSDIDSEVAQHLKRLSRKDPITKLKALASLSELLKQKSGKDVAS
        MGRPKG+GARSKARPSSSSLAASLLPSDSAANAAGFGGFLGSYRLDSSLTGDDAAPFSDIDSEVAQHLKRLSRKDP TKLKALASLSE+LKQKSGKDVAS
Subjt:  MGRPKGEGARSKARPSSSSLAASLLPSDSAANAAGFGGFLGSYRLDSSLTGDDAAPFSDIDSEVAQHLKRLSRKDPITKLKALASLSELLKQKSGKDVAS

Query:  IIPQWV
        IIPQWV
Subjt:  IIPQWV

KAG7037028.1 E3 ubiquitin-protein ligase listerin [Cucurbita argyrosperma subsp. argyrosperma]

1.4e-43

94.34

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Query:  MGRPKGEGARSKARPSSSSLAASLLPSDSAANAAGFGGFLGSYRLDSSLTGDDAAPFSDIDSEVAQHLKRLSRKDPITKLKALASLSELLKQKSGKDVAS
        MGRPKG+GARSKARPSSSSLAASLLPSDSAANAAGFGGFLGSYRLDS+LTGDDAA FSDID EVAQHLKRLSRKDP TKLKALASLSE LKQKSGKDVAS
Subjt:  MGRPKGEGARSKARPSSSSLAASLLPSDSAANAAGFGGFLGSYRLDSSLTGDDAAPFSDIDSEVAQHLKRLSRKDPITKLKALASLSELLKQKSGKDVAS

Query:  IIPQWV
        IIPQWV
Subjt:  IIPQWV

XP_008457305.1 PREDICTED: E3 ubiquitin-protein ligase listerin isoform X1 [Cucumis melo]

1.5e-45

97.17

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Query:  MGRPKGEGARSKARPSSSSLAASLLPSDSAANAAGFGGFLGSYRLDSSLTGDDAAPFSDIDSEVAQHLKRLSRKDPITKLKALASLSELLKQKSGKDVAS
        MGRPKG+GARSKARPSSSSLAASLLPSDSAANAAGFGGFLGSYRLDSSLTGDDAAPFSDIDSEVAQHLKRLSRKDP TKLKALASLSE+LKQKSGKDVAS
Subjt:  MGRPKGEGARSKARPSSSSLAASLLPSDSAANAAGFGGFLGSYRLDSSLTGDDAAPFSDIDSEVAQHLKRLSRKDPITKLKALASLSELLKQKSGKDVAS

Query:  IIPQWV
        IIPQWV
Subjt:  IIPQWV

XP_011658874.1 E3 ubiquitin-protein ligase listerin isoform X1 [Cucumis sativus]

2.1e-44

95.28

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Query:  MGRPKGEGARSKARPSSSSLAASLLPSDSAANAAGFGGFLGSYRLDSSLTGDDAAPFSDIDSEVAQHLKRLSRKDPITKLKALASLSELLKQKSGKDVAS
        MGRPKG+GARSKARPSSSSLAASLLPSDSAANAAGFGGFLGSYRLD SLTGDDAAPFSDID EVAQHLKRLSRKDP TKLKALASLSE+LKQKSGKDVAS
Subjt:  MGRPKGEGARSKARPSSSSLAASLLPSDSAANAAGFGGFLGSYRLDSSLTGDDAAPFSDIDSEVAQHLKRLSRKDPITKLKALASLSELLKQKSGKDVAS

Query:  IIPQWV
        IIPQWV
Subjt:  IIPQWV

XP_022154879.1 E3 ubiquitin-protein ligase listerin isoform X1 [Momordica charantia]

1.9e-45

97.17

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Query:  MGRPKGEGARSKARPSSSSLAASLLPSDSAANAAGFGGFLGSYRLDSSLTGDDAAPFSDIDSEVAQHLKRLSRKDPITKLKALASLSELLKQKSGKDVAS
        MGRPKGEG RSKARPSSSSLAASLLPSDSAANAAGFGGF+GSYRLDSSL GDDAAPFSDIDSEVAQHLKRLSRKDPITKLKALASLSELLKQKSGKDVAS
Subjt:  MGRPKGEGARSKARPSSSSLAASLLPSDSAANAAGFGGFLGSYRLDSSLTGDDAAPFSDIDSEVAQHLKRLSRKDPITKLKALASLSELLKQKSGKDVAS

Query:  IIPQWV
        IIPQWV
Subjt:  IIPQWV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LXT2 E3 ubiquitin-protein ligase listerin

1.0e-44

95.28

Show/hide

Query:  MGRPKGEGARSKARPSSSSLAASLLPSDSAANAAGFGGFLGSYRLDSSLTGDDAAPFSDIDSEVAQHLKRLSRKDPITKLKALASLSELLKQKSGKDVAS
        MGRPKG+GARSKARPSSSSLAASLLPSDSAANAAGFGGFLGSYRLD SLTGDDAAPFSDID EVAQHLKRLSRKDP TKLKALASLSE+LKQKSGKDVAS
Subjt:  MGRPKGEGARSKARPSSSSLAASLLPSDSAANAAGFGGFLGSYRLDSSLTGDDAAPFSDIDSEVAQHLKRLSRKDPITKLKALASLSELLKQKSGKDVAS

Query:  IIPQWV
        IIPQWV
Subjt:  IIPQWV

A0A1S3C4S0 E3 ubiquitin-protein ligase listerin

7.0e-46

97.17

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Query:  MGRPKGEGARSKARPSSSSLAASLLPSDSAANAAGFGGFLGSYRLDSSLTGDDAAPFSDIDSEVAQHLKRLSRKDPITKLKALASLSELLKQKSGKDVAS
        MGRPKG+GARSKARPSSSSLAASLLPSDSAANAAGFGGFLGSYRLDSSLTGDDAAPFSDIDSEVAQHLKRLSRKDP TKLKALASLSE+LKQKSGKDVAS
Subjt:  MGRPKGEGARSKARPSSSSLAASLLPSDSAANAAGFGGFLGSYRLDSSLTGDDAAPFSDIDSEVAQHLKRLSRKDPITKLKALASLSELLKQKSGKDVAS

Query:  IIPQWV
        IIPQWV
Subjt:  IIPQWV

A0A5A7V2L4 E3 ubiquitin-protein ligase listerin

7.0e-46

97.17

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Query:  MGRPKGEGARSKARPSSSSLAASLLPSDSAANAAGFGGFLGSYRLDSSLTGDDAAPFSDIDSEVAQHLKRLSRKDPITKLKALASLSELLKQKSGKDVAS
        MGRPKG+GARSKARPSSSSLAASLLPSDSAANAAGFGGFLGSYRLDSSLTGDDAAPFSDIDSEVAQHLKRLSRKDP TKLKALASLSE+LKQKSGKDVAS
Subjt:  MGRPKGEGARSKARPSSSSLAASLLPSDSAANAAGFGGFLGSYRLDSSLTGDDAAPFSDIDSEVAQHLKRLSRKDPITKLKALASLSELLKQKSGKDVAS

Query:  IIPQWV
        IIPQWV
Subjt:  IIPQWV

A0A6J1DNK4 E3 ubiquitin-protein ligase listerin

9.2e-46

97.17

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Query:  MGRPKGEGARSKARPSSSSLAASLLPSDSAANAAGFGGFLGSYRLDSSLTGDDAAPFSDIDSEVAQHLKRLSRKDPITKLKALASLSELLKQKSGKDVAS
        MGRPKGEG RSKARPSSSSLAASLLPSDSAANAAGFGGF+GSYRLDSSL GDDAAPFSDIDSEVAQHLKRLSRKDPITKLKALASLSELLKQKSGKDVAS
Subjt:  MGRPKGEGARSKARPSSSSLAASLLPSDSAANAAGFGGFLGSYRLDSSLTGDDAAPFSDIDSEVAQHLKRLSRKDPITKLKALASLSELLKQKSGKDVAS

Query:  IIPQWV
        IIPQWV
Subjt:  IIPQWV

A0A6J1KER5 E3 ubiquitin-protein ligase listerin

6.6e-44

94.34

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Query:  MGRPKGEGARSKARPSSSSLAASLLPSDSAANAAGFGGFLGSYRLDSSLTGDDAAPFSDIDSEVAQHLKRLSRKDPITKLKALASLSELLKQKSGKDVAS
        MGRPKG+GARSKARPSSSSLAASLLPSDSAANAAGFGGFLGSYRLDS+LTGDDAA FSDID EVAQHLKRLSRKDP TKLKALASLSE LKQKSGKDVAS
Subjt:  MGRPKGEGARSKARPSSSSLAASLLPSDSAANAAGFGGFLGSYRLDSSLTGDDAAPFSDIDSEVAQHLKRLSRKDPITKLKALASLSELLKQKSGKDVAS

Query:  IIPQWV
        IIPQWV
Subjt:  IIPQWV

SwissProt top hits

e value

%identity

Alignment

Q9FGI1 E3 ubiquitin-protein ligase listerin

2.9e-33

73.33

Show/hide

Query:  MGRPKGEGARSKARPSSSSLAASLLPSDSAANAAGFGGFLGSYRLDSSLTGDDAAPFSDIDSEVAQHLKRLSRKDPITKLKALASLSELLKQKSGKDVAS
        MG+PKG+ ARSKARPSSSSLAASLLPS SAA A GFGG++GS R  +SL+ +D+A F D+DSEVAQHL+RLSRKDP TK+KALASLSEL+KQK GK++  
Subjt:  MGRPKGEGARSKARPSSSSLAASLLPSDSAANAAGFGGFLGSYRLDSSLTGDDAAPFSDIDSEVAQHLKRLSRKDPITKLKALASLSELLKQKSGKDVAS

Query:  IIPQW
        IIPQW
Subjt:  IIPQW

Arabidopsis top hits

e value

%identity

Alignment

AT5G58410.1 HEAT/U-box domain-containing protein

2.1e-34

73.33

Show/hide

Query:  MGRPKGEGARSKARPSSSSLAASLLPSDSAANAAGFGGFLGSYRLDSSLTGDDAAPFSDIDSEVAQHLKRLSRKDPITKLKALASLSELLKQKSGKDVAS
        MG+PKG+ ARSKARPSSSSLAASLLPS SAA A GFGG++GS R  +SL+ +D+A F D+DSEVAQHL+RLSRKDP TK+KALASLSEL+KQK GK++  
Subjt:  MGRPKGEGARSKARPSSSSLAASLLPSDSAANAAGFGGFLGSYRLDSSLTGDDAAPFSDIDSEVAQHLKRLSRKDPITKLKALASLSELLKQKSGKDVAS

Query:  IIPQW
        IIPQW
Subjt:  IIPQW

Sequences

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CDS sequence

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ATGGGTAGGCCCAAGGGAGAGGGAGCTAGAAGCAAGGCTAGACCTTCAAGCAGCAGTTTGGCAGCGTCACTTCTGCCATCGGATTCTGCCGCTAACGCTGCTGGATTCGG
CGGCTTTCTTGGTAGTTACCGGCTCGATTCTTCTCTCACCGGGGATGATGCAGCACCTTTTTCGGATATTGATAGTGAAGTTGCACAGCACTTGAAGAGGCTTTCAAGGA
AAGACCCAATTACCAAGCTCAAAGCATTGGCCTCTTTGTCTGAGCTTCTTAAGCAGAAGTCTGGGAAAGACGTCGCATCAATTATTCCACAATGGGTACCTCTTTTTCCT
TCTCCATGCTCAACTAATCTTGACTTTGCATTGATGACACAATATCGTGAGGGTGATTTGATAGAAAAGAAACCAGAGGGAAAGGGGAACTTGAGTTGTGAGCAGGAGTA
CGGAATTCCTTGA

mRNA sequence

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Protein sequence

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MGRPKGEGARSKARPSSSSLAASLLPSDSAANAAGFGGFLGSYRLDSSLTGDDAAPFSDIDSEVAQHLKRLSRKDPITKLKALASLSELLKQKSGKDVASIIPQWVPLFP
SPCSTNLDFALMTQYREGDLIEKKPEGKGNLSCEQEYGIP

Spg005890 (gene) of Sponge gourd (cylindrica) v1 genome