CuGenDBv2

Gene ID	Spg005910
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	sister chromatid cohesion protein SCC4
Genome location	scaffold11:51389..55253
RNA-Seq Expression	Spg005910
Synteny	Spg005910
Gene Ontology terms	GO:0007064 - mitotic sister chromatid cohesion (biological process) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR011990 - Tetratricopeptide-like helical domain superfamily IPR019440 - Chromatid cohesion factor MAU2

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6607383.1 Sister chromatid cohesion protein SCC4, partial [Cucurbita argyrosperma subsp. sororia]

1.6e-105

94.42

Show/hide

Query:  SEALDLIGPVYRMMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYD
        ++ALDLIGPVYRMMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYD
Subjt:  SEALDLIGPVYRMMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYD

Query:  IPTQIWVLSVLTTLYQELGEKGNEMENTEYQCKKADDLQKRLVDAHSSIHHIELIDKVRLEIQQLKEVDIKRAIGGPALGVDLDIPESVGVSVSLPTSSL
        IPTQIWVLSVLTTLYQELGEKGNEMEN EYQ KKADDLQKRLVDAHSSIHHI+LI+KVR EIQQLKEVD+KRAIGGP+LGV+LDIPES+GVSVSLPTSSL
Subjt:  IPTQIWVLSVLTTLYQELGEKGNEMENTEYQCKKADDLQKRLVDAHSSIHHIELIDKVRLEIQQLKEVDIKRAIGGPALGVDLDIPESVGVSVSLPTSSL

Query:  KLMDMDTGRRGKRKI
        KLMDMDTGRRGKRK+
Subjt:  KLMDMDTGRRGKRKI

KAG7037052.1 hypothetical protein SDJN02_00673, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.6e-105

94.42

Show/hide

Query:  SEALDLIGPVYRMMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYD
        ++ALDLIGPVYRMMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYD
Subjt:  SEALDLIGPVYRMMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYD

Query:  IPTQIWVLSVLTTLYQELGEKGNEMENTEYQCKKADDLQKRLVDAHSSIHHIELIDKVRLEIQQLKEVDIKRAIGGPALGVDLDIPESVGVSVSLPTSSL
        IPTQIWVLSVLTTLYQELGEKGNEMEN EYQ KKADDLQKRLVDAHSSIHHI+LI+KVR EIQQLKEVD+KRAIGGP+LGV+LDIPES+GVSVSLPTSSL
Subjt:  IPTQIWVLSVLTTLYQELGEKGNEMENTEYQCKKADDLQKRLVDAHSSIHHIELIDKVRLEIQQLKEVDIKRAIGGPALGVDLDIPESVGVSVSLPTSSL

Query:  KLMDMDTGRRGKRKI
        KLMDMDTGRRGKRK+
Subjt:  KLMDMDTGRRGKRKI

XP_022158435.1 sister chromatid cohesion protein SCC4 [Momordica charantia]

4.3e-106

95.35

Show/hide

Query:  SEALDLIGPVYRMMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYD
        ++ALDLIGPVYRMMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYD
Subjt:  SEALDLIGPVYRMMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYD

Query:  IPTQIWVLSVLTTLYQELGEKGNEMENTEYQCKKADDLQKRLVDAHSSIHHIELIDKVRLEIQQLKEVDIKRAIGGPALGVDLDIPESVGVSVSLPTSSL
        IPTQIWVLSVLTTLYQELGEKGNEMEN EYQ KKADDLQKRL DAHSSIHHIELIDKVRLEIQQLKEVDIKRAIGGP+LGV+LDIPESVGVSVSLPTSSL
Subjt:  IPTQIWVLSVLTTLYQELGEKGNEMENTEYQCKKADDLQKRLVDAHSSIHHIELIDKVRLEIQQLKEVDIKRAIGGPALGVDLDIPESVGVSVSLPTSSL

Query:  KLMDMDTGRRGKRKI
        KL+D+DTGRRGKRK+
Subjt:  KLMDMDTGRRGKRKI

XP_023521217.1 sister chromatid cohesion protein SCC4 isoform X1 [Cucurbita pepo subsp. pepo]

1.6e-105

94.42

Show/hide

Query:  SEALDLIGPVYRMMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYD
        ++ALDLIGPVYRMMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYD
Subjt:  SEALDLIGPVYRMMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYD

Query:  IPTQIWVLSVLTTLYQELGEKGNEMENTEYQCKKADDLQKRLVDAHSSIHHIELIDKVRLEIQQLKEVDIKRAIGGPALGVDLDIPESVGVSVSLPTSSL
        IPTQIWVLSVLTTLYQELGEKGNEMEN EYQ KKADDLQKRLVDAHSSIHHI+LI+KVR EIQQLKEVD+KRAIGGP+LGV+LDIPES+GVSVSLPTSSL
Subjt:  IPTQIWVLSVLTTLYQELGEKGNEMENTEYQCKKADDLQKRLVDAHSSIHHIELIDKVRLEIQQLKEVDIKRAIGGPALGVDLDIPESVGVSVSLPTSSL

Query:  KLMDMDTGRRGKRKI
        KLMDMDTGRRGKRK+
Subjt:  KLMDMDTGRRGKRKI

XP_023524546.1 sister chromatid cohesion protein SCC4-like, partial [Cucurbita pepo subsp. pepo]

1.6e-105

94.42

Show/hide

Query:  SEALDLIGPVYRMMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYD
        ++ALDLIGPVYRMMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYD
Subjt:  SEALDLIGPVYRMMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYD

Query:  IPTQIWVLSVLTTLYQELGEKGNEMENTEYQCKKADDLQKRLVDAHSSIHHIELIDKVRLEIQQLKEVDIKRAIGGPALGVDLDIPESVGVSVSLPTSSL
        IPTQIWVLSVLTTLYQELGEKGNEMEN EYQ KKADDLQKRLVDAHSSIHHI+LI+KVR EIQQLKEVD+KRAIGGP+LGV+LDIPES+GVSVSLPTSSL
Subjt:  IPTQIWVLSVLTTLYQELGEKGNEMENTEYQCKKADDLQKRLVDAHSSIHHIELIDKVRLEIQQLKEVDIKRAIGGPALGVDLDIPESVGVSVSLPTSSL

Query:  KLMDMDTGRRGKRKI
        KLMDMDTGRRGKRK+
Subjt:  KLMDMDTGRRGKRKI

TrEMBL top hits

e value

%identity

Alignment

A0A5A7UEF7 MAU2 chromatid cohesion factor-like protein

9.4e-99

92.96

Show/hide

Query:  ALDLIGPVYRMMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIP
        ALDLIGPVY MMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIP
Subjt:  ALDLIGPVYRMMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIP

Query:  TQIWVLSVLTTLYQELGEKGNEMENTEYQCKKADDLQKRLVDAHSSIHHIELIDKVRLEIQQLKEVDIKRAIGGPALGVDLDIPESVGVSVSLPTSSLKL
        TQIWVLSVLTTLYQELGEKGNEMEN EYQCKKADDLQ+RLVDAHSSIHHIELIDKVRLEIQQLK VDIKRA G  +LGVDLDIP S+G SVS  TSSLKL
Subjt:  TQIWVLSVLTTLYQELGEKGNEMENTEYQCKKADDLQKRLVDAHSSIHHIELIDKVRLEIQQLKEVDIKRAIGGPALGVDLDIPESVGVSVSLPTSSLKL

Query:  MDMDTGRRGKRKI
        MD+D+GRRGKRKI
Subjt:  MDMDTGRRGKRKI

A0A5D3CHS2 MAU2 chromatid cohesion factor-like protein

9.4e-99

92.96

Show/hide

Query:  ALDLIGPVYRMMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIP
        ALDLIGPVY MMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIP
Subjt:  ALDLIGPVYRMMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIP

Query:  TQIWVLSVLTTLYQELGEKGNEMENTEYQCKKADDLQKRLVDAHSSIHHIELIDKVRLEIQQLKEVDIKRAIGGPALGVDLDIPESVGVSVSLPTSSLKL
        TQIWVLSVLTTLYQELGEKGNEMEN EYQCKKADDLQ+RLVDAHSSIHHIELIDKVRLEIQQLK VDIKRA G  +LGVDLDIP S+G SVS  TSSLKL
Subjt:  TQIWVLSVLTTLYQELGEKGNEMENTEYQCKKADDLQKRLVDAHSSIHHIELIDKVRLEIQQLKEVDIKRAIGGPALGVDLDIPESVGVSVSLPTSSLKL

Query:  MDMDTGRRGKRKI
        MD+D+GRRGKRKI
Subjt:  MDMDTGRRGKRKI

A0A6J1DVU1 sister chromatid cohesion protein SCC4

2.1e-106

95.35

Show/hide

Query:  SEALDLIGPVYRMMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYD
        ++ALDLIGPVYRMMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYD
Subjt:  SEALDLIGPVYRMMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYD

Query:  IPTQIWVLSVLTTLYQELGEKGNEMENTEYQCKKADDLQKRLVDAHSSIHHIELIDKVRLEIQQLKEVDIKRAIGGPALGVDLDIPESVGVSVSLPTSSL
        IPTQIWVLSVLTTLYQELGEKGNEMEN EYQ KKADDLQKRL DAHSSIHHIELIDKVRLEIQQLKEVDIKRAIGGP+LGV+LDIPESVGVSVSLPTSSL
Subjt:  IPTQIWVLSVLTTLYQELGEKGNEMENTEYQCKKADDLQKRLVDAHSSIHHIELIDKVRLEIQQLKEVDIKRAIGGPALGVDLDIPESVGVSVSLPTSSL

Query:  KLMDMDTGRRGKRKI
        KL+D+DTGRRGKRK+
Subjt:  KLMDMDTGRRGKRKI

A0A6J1GBA4 sister chromatid cohesion protein SCC4

8.0e-106

94.42

Show/hide

Query:  SEALDLIGPVYRMMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYD
        ++ALDLIGPVYRMMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYD
Subjt:  SEALDLIGPVYRMMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYD

Query:  IPTQIWVLSVLTTLYQELGEKGNEMENTEYQCKKADDLQKRLVDAHSSIHHIELIDKVRLEIQQLKEVDIKRAIGGPALGVDLDIPESVGVSVSLPTSSL
        IPTQIWVLSVLTTLYQELGEKGNEMEN EYQ KKADDLQKRLVDAHSSIHHI+LI+KVR EIQQLKEVD+KRAIGGP+LGV+LDIPES+GVSVSLPTSSL
Subjt:  IPTQIWVLSVLTTLYQELGEKGNEMENTEYQCKKADDLQKRLVDAHSSIHHIELIDKVRLEIQQLKEVDIKRAIGGPALGVDLDIPESVGVSVSLPTSSL

Query:  KLMDMDTGRRGKRKI
        KLMDMDTGRRGKRK+
Subjt:  KLMDMDTGRRGKRKI

A0A6J1KHQ8 sister chromatid cohesion protein SCC4

2.3e-105

93.95

Show/hide

Query:  SEALDLIGPVYRMMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYD
        ++ALDLIGPVYRMMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYD
Subjt:  SEALDLIGPVYRMMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYD

Query:  IPTQIWVLSVLTTLYQELGEKGNEMENTEYQCKKADDLQKRLVDAHSSIHHIELIDKVRLEIQQLKEVDIKRAIGGPALGVDLDIPESVGVSVSLPTSSL
        IPTQIWVLSVLTTLYQELGEKGNEMEN EYQ KK DDLQKRLVDAHSSIHHI+LI+KVR EIQQLKEVD+KRAIGGP+LGV+LDIPES+GVSVSLPTSSL
Subjt:  IPTQIWVLSVLTTLYQELGEKGNEMENTEYQCKKADDLQKRLVDAHSSIHHIELIDKVRLEIQQLKEVDIKRAIGGPALGVDLDIPESVGVSVSLPTSSL

Query:  KLMDMDTGRRGKRKI
        KLMDMDTGRRGKRK+
Subjt:  KLMDMDTGRRGKRKI

SwissProt top hits

e value

%identity

Alignment

Q9FGN7 Sister chromatid cohesion protein SCC4

2.8e-71

65.75

Show/hide

Query:  SEALDLIGPVYRMMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYD
        S+ALDLIGP+  M +S  GVRE+ S+LFAYGLLLMKQ DLQEARNRLAKGLQ+ HNH+GNLQLVAQYLT+LG+LAL+LHDTVQAREILRSSLTLAKKLYD
Subjt:  SEALDLIGPVYRMMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYD

Query:  IPTQIWVLSVLTTLYQELGEKGNEMENTEYQCKKADDLQKRLVDAHSSIHHIELIDKVRLEIQQLKEVDIKRAIGGPALGV--DLDIPESVGVSVSLPT-
        IPTQ+WVLS+ T LYQ+LGEKGNEMEN E++ KK D+LQ RL +A  SIHHIEL+ K R+E+ Q+     ++++   A  +  +LDIPESVG+    P  
Subjt:  IPTQIWVLSVLTTLYQELGEKGNEMENTEYQCKKADDLQKRLVDAHSSIHHIELIDKVRLEIQQLKEVDIKRAIGGPALGV--DLDIPESVGVSVSLPT-

Query:  SSLKLMDMDTGRR-GKRKI
        SS +L+ +DTG+R GKR++
Subjt:  SSLKLMDMDTGRR-GKRKI

Arabidopsis top hits

e value

%identity

Alignment

AT5G51340.1 Tetratricopeptide repeat (TPR)-like superfamily protein

2.0e-72

65.75

Show/hide

Query:  SEALDLIGPVYRMMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYD
        S+ALDLIGP+  M +S  GVRE+ S+LFAYGLLLMKQ DLQEARNRLAKGLQ+ HNH+GNLQLVAQYLT+LG+LAL+LHDTVQAREILRSSLTLAKKLYD
Subjt:  SEALDLIGPVYRMMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYD

Query:  IPTQIWVLSVLTTLYQELGEKGNEMENTEYQCKKADDLQKRLVDAHSSIHHIELIDKVRLEIQQLKEVDIKRAIGGPALGV--DLDIPESVGVSVSLPT-
        IPTQ+WVLS+ T LYQ+LGEKGNEMEN E++ KK D+LQ RL +A  SIHHIEL+ K R+E+ Q+     ++++   A  +  +LDIPESVG+    P  
Subjt:  IPTQIWVLSVLTTLYQELGEKGNEMENTEYQCKKADDLQKRLVDAHSSIHHIELIDKVRLEIQQLKEVDIKRAIGGPALGV--DLDIPESVGVSVSLPT-

Query:  SSLKLMDMDTGRR-GKRKI
        SS +L+ +DTG+R GKR++
Subjt:  SSLKLMDMDTGRR-GKRKI

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCTTATTGTTCGGAAGATGGAGCCAAAACCAACCTTACGCTGGAGCAAATTTTTGGTGGTGGCCTTTTCTTCTATTACAGTCTTGTGTGTGAAGCTGAATAGTTTTTC
AGCATTCAATTTGTGCGGCAGTGAGGCACTTGACTTGATTGGACCAGTTTACAGAATGATGGATTCTTTTGTTGGAGTTCGAGAGAAAACCAGTGTTCTTTTTGCTTATG
GCCTCTTACTGATGAAGCAACATGATTTACAAGAAGCAAGAAATCGATTGGCGAAAGGATTACAATTGACCCACAATCATTTGGGGAATCTTCAACTTGTTGCACAATAT
TTGACAATCCTCGGGAGTTTGGCACTCGCTCTACATGACACTGTCCAAGCCAGAGAGATATTGAGATCATCATTAACATTGGCAAAGAAACTCTATGACATCCCAACTCA
GATCTGGGTACTATCAGTTTTAACAACTTTATACCAAGAGTTGGGTGAGAAAGGAAATGAGATGGAGAACACGGAATATCAATGTAAAAAGGCAGATGATCTGCAAAAGA
GATTGGTTGATGCGCATTCATCCATTCATCACATCGAATTAATTGACAAGGTACGACTTGAAATTCAGCAACTTAAGGAGGTTGACATCAAGCGTGCAATAGGTGGCCCG
GCCCTTGGAGTTGATCTTGATATACCAGAATCCGTTGGTGTATCTGTTTCGTTGCCGACTTCATCATTGAAGCTTATGGATATGGACACAGGGAGACGTGGAAAGAGGAA
AATTTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MLIVRKMEPKPTLRWSKFLVVAFSSITVLCVKLNSFSAFNLCGSEALDLIGPVYRMMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGNLQLVAQY
LTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGEKGNEMENTEYQCKKADDLQKRLVDAHSSIHHIELIDKVRLEIQQLKEVDIKRAIGGP
ALGVDLDIPESVGVSVSLPTSSLKLMDMDTGRRGKRKI

Spg005910 (gene) of Sponge gourd (cylindrica) v1 genome