; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg005923 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg005923
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptiontranscriptional corepressor SEUSS
Genome locationscaffold11:2383979..2386703
RNA-Seq ExpressionSpg005923
SyntenySpg005923
Gene Ontology termsGO:0000122 - negative regulation of transcription by RNA polymerase II (biological process)
GO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005667 - transcription factor complex (cellular component)
InterPro domainsIPR029005 - LIM-domain binding protein/SEUSS


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAY58520.1 hypothetical protein CUMW_187600 [Citrus unshiu]1.4e-3272.97Show/hide
Query:  GKSISSWEFFARRHEELIPRRLLIPQVSQLGVAAQKYQTAIQNTSSNLSTHELQNNYNMFVASARQLAKALEVLLVNDLGYTKRYVCCLQFNTKNSFTQE
        G  I SWEF ARRHEELIPRRLLIPQVSQLG AAQKYQ A QN SSNLS  ELQNN NMFVASARQLAKALEV LVNDLGYTKRYV CLQ +   +  ++
Subjt:  GKSISSWEFFARRHEELIPRRLLIPQVSQLGVAAQKYQTAIQNTSSNLSTHELQNNYNMFVASARQLAKALEVLLVNDLGYTKRYVCCLQFNTKNSFTQE

Query:  QLDEVRVEWVG
         +D  RV   G
Subjt:  QLDEVRVEWVG

KAG6592158.1 Transcriptional corepressor SEUSS, partial [Cucurbita argyrosperma subsp. sororia]1.8e-3279Show/hide
Query:  ISSWEFFARRHEELIPRRLLIPQVSQLGVAAQKYQTAIQNTSSNLSTHELQNNYNMFVASARQLAKALEVLLVNDLGYTKRYVCCLQFNTKNSFTQEQLD
        I SWEF ARRHEELIPRRLLIPQVSQLG AAQKYQTAIQN SSNLST ELQNN NMFV SARQLAKALEV LVNDLGYTKRYV CLQ +   +  ++ +D
Subjt:  ISSWEFFARRHEELIPRRLLIPQVSQLGVAAQKYQTAIQNTSSNLSTHELQNNYNMFVASARQLAKALEVLLVNDLGYTKRYVCCLQFNTKNSFTQEQLD

KAG7025020.1 Transcriptional corepressor SEUSS, partial [Cucurbita argyrosperma subsp. argyrosperma]1.8e-3279Show/hide
Query:  ISSWEFFARRHEELIPRRLLIPQVSQLGVAAQKYQTAIQNTSSNLSTHELQNNYNMFVASARQLAKALEVLLVNDLGYTKRYVCCLQFNTKNSFTQEQLD
        I SWEF ARRHEELIPRRLLIPQVSQLG AAQKYQTAIQN SSNLST ELQNN NMFV SARQLAKALEV LVNDLGYTKRYV CLQ +   +  ++ +D
Subjt:  ISSWEFFARRHEELIPRRLLIPQVSQLGVAAQKYQTAIQNTSSNLSTHELQNNYNMFVASARQLAKALEVLLVNDLGYTKRYVCCLQFNTKNSFTQEQLD

XP_022936064.1 transcriptional corepressor SEUSS [Cucurbita moschata]1.8e-3279Show/hide
Query:  ISSWEFFARRHEELIPRRLLIPQVSQLGVAAQKYQTAIQNTSSNLSTHELQNNYNMFVASARQLAKALEVLLVNDLGYTKRYVCCLQFNTKNSFTQEQLD
        I SWEF ARRHEELIPRRLLIPQVSQLG AAQKYQTAIQN SSNLST ELQNN NMFV SARQLAKALEV LVNDLGYTKRYV CLQ +   +  ++ +D
Subjt:  ISSWEFFARRHEELIPRRLLIPQVSQLGVAAQKYQTAIQNTSSNLSTHELQNNYNMFVASARQLAKALEVLLVNDLGYTKRYVCCLQFNTKNSFTQEQLD

XP_023535043.1 transcriptional corepressor SEUSS-like [Cucurbita pepo subsp. pepo]1.8e-3279Show/hide
Query:  ISSWEFFARRHEELIPRRLLIPQVSQLGVAAQKYQTAIQNTSSNLSTHELQNNYNMFVASARQLAKALEVLLVNDLGYTKRYVCCLQFNTKNSFTQEQLD
        I SWEF ARRHEELIPRRLLIPQVSQLG AAQKYQTAIQN SSNLST ELQNN NMFV SARQLAKALEV LVNDLGYTKRYV CLQ +   +  ++ +D
Subjt:  ISSWEFFARRHEELIPRRLLIPQVSQLGVAAQKYQTAIQNTSSNLSTHELQNNYNMFVASARQLAKALEVLLVNDLGYTKRYVCCLQFNTKNSFTQEQLD

TrEMBL top hitse value%identityAlignment
A0A0A0KCR7 Uncharacterized protein1.5e-3273.15Show/hide
Query:  ISSWEFFARRHEELIPRRLLIPQVSQLGVAAQKYQTAIQNTSSNLSTHELQNNYNMFVASARQLAKALEVLLVNDLGYTKRYVCCLQFNTKNSFTQEQLD
        I SWEF ARRHEELIPRRLLIPQVS LG AAQK+Q+AIQNTSSNLST ELQNN NMFVASARQLAKALEV LVNDLGYTKRYV CLQ +   +  ++ +D
Subjt:  ISSWEFFARRHEELIPRRLLIPQVSQLGVAAQKYQTAIQNTSSNLSTHELQNNYNMFVASARQLAKALEVLLVNDLGYTKRYVCCLQFNTKNSFTQEQLD

Query:  EVRVEWVG
          +   +G
Subjt:  EVRVEWVG

A0A2H5Q1J9 Uncharacterized protein6.7e-3372.97Show/hide
Query:  GKSISSWEFFARRHEELIPRRLLIPQVSQLGVAAQKYQTAIQNTSSNLSTHELQNNYNMFVASARQLAKALEVLLVNDLGYTKRYVCCLQFNTKNSFTQE
        G  I SWEF ARRHEELIPRRLLIPQVSQLG AAQKYQ A QN SSNLS  ELQNN NMFVASARQLAKALEV LVNDLGYTKRYV CLQ +   +  ++
Subjt:  GKSISSWEFFARRHEELIPRRLLIPQVSQLGVAAQKYQTAIQNTSSNLSTHELQNNYNMFVASARQLAKALEVLLVNDLGYTKRYVCCLQFNTKNSFTQE

Query:  QLDEVRVEWVG
         +D  RV   G
Subjt:  QLDEVRVEWVG

A0A5D3DJE8 Transcriptional corepressor SEUSS-like1.5e-3273.15Show/hide
Query:  ISSWEFFARRHEELIPRRLLIPQVSQLGVAAQKYQTAIQNTSSNLSTHELQNNYNMFVASARQLAKALEVLLVNDLGYTKRYVCCLQFNTKNSFTQEQLD
        I SWEF ARRHEELIPRRLLIPQVS LG AAQK+Q+AIQNTSSNLST ELQNN NMFVASARQLAKALEV LVNDLGYTKRYV CLQ +   +  ++ +D
Subjt:  ISSWEFFARRHEELIPRRLLIPQVSQLGVAAQKYQTAIQNTSSNLSTHELQNNYNMFVASARQLAKALEVLLVNDLGYTKRYVCCLQFNTKNSFTQEQLD

Query:  EVRVEWVG
          +   +G
Subjt:  EVRVEWVG

A0A6J1F783 transcriptional corepressor SEUSS8.7e-3379Show/hide
Query:  ISSWEFFARRHEELIPRRLLIPQVSQLGVAAQKYQTAIQNTSSNLSTHELQNNYNMFVASARQLAKALEVLLVNDLGYTKRYVCCLQFNTKNSFTQEQLD
        I SWEF ARRHEELIPRRLLIPQVSQLG AAQKYQTAIQN SSNLST ELQNN NMFV SARQLAKALEV LVNDLGYTKRYV CLQ +   +  ++ +D
Subjt:  ISSWEFFARRHEELIPRRLLIPQVSQLGVAAQKYQTAIQNTSSNLSTHELQNNYNMFVASARQLAKALEVLLVNDLGYTKRYVCCLQFNTKNSFTQEQLD

A0A6J1IIT6 transcriptional corepressor SEUSS-like1.1e-3278Show/hide
Query:  ISSWEFFARRHEELIPRRLLIPQVSQLGVAAQKYQTAIQNTSSNLSTHELQNNYNMFVASARQLAKALEVLLVNDLGYTKRYVCCLQFNTKNSFTQEQLD
        I SWEF ARRHEELIPRRLLIPQVSQLG AAQKYQTAIQN SSNLST ELQNN NMFV SARQLAKALEV LVNDLGYTKRY+ CLQ +   +  ++ +D
Subjt:  ISSWEFFARRHEELIPRRLLIPQVSQLGVAAQKYQTAIQNTSSNLSTHELQNNYNMFVASARQLAKALEVLLVNDLGYTKRYVCCLQFNTKNSFTQEQLD

SwissProt top hitse value%identityAlignment
F4JT98 Probable transcriptional regulator SLK37.6e-1843.31Show/hide
Query:  DGLRLREFNGWVVRLSRLQPQII-EGHGQV----GKSISSWEFFARRHEELIPRRLLIPQVSQLGVAAQKYQTAI-QNTSSNLSTHELQNNYNMFVASAR
        +GL + E+   V      Q +++ EGH ++       I SWEF ARRHEEL+ RRL+ PQV+QL   AQK Q+ I ++ S  +S  ++Q+N NM + + R
Subjt:  DGLRLREFNGWVVRLSRLQPQII-EGHGQV----GKSISSWEFFARRHEELIPRRLLIPQVSQLGVAAQKYQTAI-QNTSSNLSTHELQNNYNMFVASAR

Query:  QLAKALEVLLVNDLGYTKRYVCCLQFN
        QLAK +E+  +NDLGY KRY+  LQ +
Subjt:  QLAKALEVLLVNDLGYTKRYVCCLQFN

Q0WVM7 Probable transcriptional regulator SLK14.5e-1844.09Show/hide
Query:  DGLRLREFNGWVVRLSRLQPQII-EGHGQV----GKSISSWEFFARRHEELIPRRLLIPQVSQLGVAAQKYQTAI-QNTSSNLSTHELQNNYNMFVASAR
        +GL + E+   V      Q +++ EGH ++       I SWEF ARRHEEL+ RRL+ PQV+QL   AQK Q+ I ++ S  +S  +LQ+N NM + + R
Subjt:  DGLRLREFNGWVVRLSRLQPQII-EGHGQV----GKSISSWEFFARRHEELIPRRLLIPQVSQLGVAAQKYQTAI-QNTSSNLSTHELQNNYNMFVASAR

Query:  QLAKALEVLLVNDLGYTKRYVCCLQFN
        QLAK +E+  +NDLGY KRY+  LQ +
Subjt:  QLAKALEVLLVNDLGYTKRYVCCLQFN

Q8W234 Transcriptional corepressor SEUSS1.6e-3166.07Show/hide
Query:  ISSWEFFARRHEELIPRRLLIPQVSQLGVAAQKYQTAIQNTSSNLSTHELQNNYNMFVASARQLAKALEVLLVNDLGYTKRYVCCLQFNTKNSFTQEQLD
        I SWEF ARRHEELIPRRLLIPQVSQLG AAQKYQ A QN +++ +  ELQNN NMFVASARQLAKALEV LVNDLGYTKRYV CLQ +   +  ++ +D
Subjt:  ISSWEFFARRHEELIPRRLLIPQVSQLGVAAQKYQTAIQNTSSNLSTHELQNNYNMFVASARQLAKALEVLLVNDLGYTKRYVCCLQFNTKNSFTQEQLD

Query:  EVRVEWVGYVSN
          R    G + +
Subjt:  EVRVEWVGYVSN

Q94BP0 Probable transcriptional regulator SLK22.8e-2048.36Show/hide
Query:  EGHGQVGKS----ISSWEFFARRHEELIPRRLLIPQVSQLGVAAQKYQTAI-QNTSSNLSTHELQNNYNMFVASARQLAKALEVLLVNDLGYTKRYVCCL
        EGH ++  S    I SWEF  RRHEEL+PRRL+ PQV+QL   A+K Q+ I Q+ S  +   +LQ N NM +A+ RQLAK+LE   +NDLG++KRYV CL
Subjt:  EGHGQVGKS----ISSWEFFARRHEELIPRRLLIPQVSQLGVAAQKYQTAI-QNTSSNLSTHELQNNYNMFVASARQLAKALEVLLVNDLGYTKRYVCCL

Query:  QFNTKNSFTQEQLDEVRVEWVG
        Q +   S  ++ +D  R + VG
Subjt:  QFNTKNSFTQEQLDEVRVEWVG

Arabidopsis top hitse value%identityAlignment
AT1G43850.1 SEUSS transcriptional co-regulator1.1e-3266.07Show/hide
Query:  ISSWEFFARRHEELIPRRLLIPQVSQLGVAAQKYQTAIQNTSSNLSTHELQNNYNMFVASARQLAKALEVLLVNDLGYTKRYVCCLQFNTKNSFTQEQLD
        I SWEF ARRHEELIPRRLLIPQVSQLG AAQKYQ A QN +++ +  ELQNN NMFVASARQLAKALEV LVNDLGYTKRYV CLQ +   +  ++ +D
Subjt:  ISSWEFFARRHEELIPRRLLIPQVSQLGVAAQKYQTAIQNTSSNLSTHELQNNYNMFVASARQLAKALEVLLVNDLGYTKRYVCCLQFNTKNSFTQEQLD

Query:  EVRVEWVGYVSN
          R    G + +
Subjt:  EVRVEWVGYVSN

AT1G43850.2 SEUSS transcriptional co-regulator1.1e-3266.07Show/hide
Query:  ISSWEFFARRHEELIPRRLLIPQVSQLGVAAQKYQTAIQNTSSNLSTHELQNNYNMFVASARQLAKALEVLLVNDLGYTKRYVCCLQFNTKNSFTQEQLD
        I SWEF ARRHEELIPRRLLIPQVSQLG AAQKYQ A QN +++ +  ELQNN NMFVASARQLAKALEV LVNDLGYTKRYV CLQ +   +  ++ +D
Subjt:  ISSWEFFARRHEELIPRRLLIPQVSQLGVAAQKYQTAIQNTSSNLSTHELQNNYNMFVASARQLAKALEVLLVNDLGYTKRYVCCLQFNTKNSFTQEQLD

Query:  EVRVEWVGYVSN
          R    G + +
Subjt:  EVRVEWVGYVSN

AT4G25520.1 SEUSS-like 13.2e-1944.09Show/hide
Query:  DGLRLREFNGWVVRLSRLQPQII-EGHGQV----GKSISSWEFFARRHEELIPRRLLIPQVSQLGVAAQKYQTAI-QNTSSNLSTHELQNNYNMFVASAR
        +GL + E+   V      Q +++ EGH ++       I SWEF ARRHEEL+ RRL+ PQV+QL   AQK Q+ I ++ S  +S  +LQ+N NM + + R
Subjt:  DGLRLREFNGWVVRLSRLQPQII-EGHGQV----GKSISSWEFFARRHEELIPRRLLIPQVSQLGVAAQKYQTAI-QNTSSNLSTHELQNNYNMFVASAR

Query:  QLAKALEVLLVNDLGYTKRYVCCLQFN
        QLAK +E+  +NDLGY KRY+  LQ +
Subjt:  QLAKALEVLLVNDLGYTKRYVCCLQFN

AT5G62090.1 SEUSS-like 22.0e-2148.36Show/hide
Query:  EGHGQVGKS----ISSWEFFARRHEELIPRRLLIPQVSQLGVAAQKYQTAI-QNTSSNLSTHELQNNYNMFVASARQLAKALEVLLVNDLGYTKRYVCCL
        EGH ++  S    I SWEF  RRHEEL+PRRL+ PQV+QL   A+K Q+ I Q+ S  +   +LQ N NM +A+ RQLAK+LE   +NDLG++KRYV CL
Subjt:  EGHGQVGKS----ISSWEFFARRHEELIPRRLLIPQVSQLGVAAQKYQTAI-QNTSSNLSTHELQNNYNMFVASARQLAKALEVLLVNDLGYTKRYVCCL

Query:  QFNTKNSFTQEQLDEVRVEWVG
        Q +   S  ++ +D  R + VG
Subjt:  QFNTKNSFTQEQLDEVRVEWVG

AT5G62090.2 SEUSS-like 22.0e-2148.36Show/hide
Query:  EGHGQVGKS----ISSWEFFARRHEELIPRRLLIPQVSQLGVAAQKYQTAI-QNTSSNLSTHELQNNYNMFVASARQLAKALEVLLVNDLGYTKRYVCCL
        EGH ++  S    I SWEF  RRHEEL+PRRL+ PQV+QL   A+K Q+ I Q+ S  +   +LQ N NM +A+ RQLAK+LE   +NDLG++KRYV CL
Subjt:  EGHGQVGKS----ISSWEFFARRHEELIPRRLLIPQVSQLGVAAQKYQTAI-QNTSSNLSTHELQNNYNMFVASARQLAKALEVLLVNDLGYTKRYVCCL

Query:  QFNTKNSFTQEQLDEVRVEWVG
        Q +   S  ++ +D  R + VG
Subjt:  QFNTKNSFTQEQLDEVRVEWVG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATCGACTTCTCTCATCGATTTCCCTCACGATTTTGTTTCTTCTTCCTTCACGATTTCCCTCTCGACTTCAGACTGCTCTGCTTCGATGGATTCCCTCGCTGAAGGA
CGTACGGTTGCTTCGACATTGCTTGTTTGACGGACTGCGGCTGCGCGAGTTCAACGGCTGGGTTGTTCGACTTTCTCGACTGCAGCCGCAAATAATAGAAGGACATGGTC
AGGTGGGGAAGTCGATATCTTCATGGGAATTCTTTGCTCGACGCCATGAAGAACTAATTCCTAGGAGATTATTGATACCTCAGGTTAGTCAACTTGGGGTAGCAGCTCAA
AAGTACCAGACTGCCATTCAAAACACATCATCCAATTTATCAACTCATGAATTGCAAAATAATTATAACATGTTTGTGGCTTCAGCGCGACAATTAGCTAAAGCCTTGGA
AGTTCTGCTAGTAAATGACTTGGGATATACAAAGAGATACGTATGTTGTCTTCAGTTTAATACTAAGAATTCGTTCACACAAGAACAGTTGGACGAGGTACGAGTTGAAT
GGGTGGGATATGTGTCAAACTTCACGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATCGACTTCTCTCATCGATTTCCCTCACGATTTTGTTTCTTCTTCCTTCACGATTTCCCTCTCGACTTCAGACTGCTCTGCTTCGATGGATTCCCTCGCTGAAGGA
CGTACGGTTGCTTCGACATTGCTTGTTTGACGGACTGCGGCTGCGCGAGTTCAACGGCTGGGTTGTTCGACTTTCTCGACTGCAGCCGCAAATAATAGAAGGACATGGTC
AGGTGGGGAAGTCGATATCTTCATGGGAATTCTTTGCTCGACGCCATGAAGAACTAATTCCTAGGAGATTATTGATACCTCAGGTTAGTCAACTTGGGGTAGCAGCTCAA
AAGTACCAGACTGCCATTCAAAACACATCATCCAATTTATCAACTCATGAATTGCAAAATAATTATAACATGTTTGTGGCTTCAGCGCGACAATTAGCTAAAGCCTTGGA
AGTTCTGCTAGTAAATGACTTGGGATATACAAAGAGATACGTATGTTGTCTTCAGTTTAATACTAAGAATTCGTTCACACAAGAACAGTTGGACGAGGTACGAGTTGAAT
GGGTGGGATATGTGTCAAACTTCACGTGA
Protein sequenceShow/hide protein sequence
MNRLLSSISLTILFLLPSRFPSRLQTALLRWIPSLKDVRLLRHCLFDGLRLREFNGWVVRLSRLQPQIIEGHGQVGKSISSWEFFARRHEELIPRRLLIPQVSQLGVAAQ
KYQTAIQNTSSNLSTHELQNNYNMFVASARQLAKALEVLLVNDLGYTKRYVCCLQFNTKNSFTQEQLDEVRVEWVGYVSNFT